Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ANAC58                           <---------ZAT6             --------->ANAC58                    --------->ANAC58                       <---------ICU4        --------->ANAC58                         --------->ANAC58                       --------->YAB1        --------->ANAC58                      ------->GAMYB           <---------At4g35610        --------->ANAC46                   --------->MYB52(1) <---------GLK1(2)  <-----------GT1  <---------ATHB12 --------->YAB1 ------>ZmHOX2a(2) ---------->DOF2   --------->At4g35610 <---------YAB1   acaaatcaacagggaacacaaccatgagcatgttgatccagacattaaccgaagcaaagtgttagattattaagcagaacaattaacaaattatcacagc  128600                           --------->AHL20(2)                      --------->YAB1                           <---------AHL20(2)                     <---------ATHB12                       --------->AHL20(2)                        --------->ANAC58                  --------->ANAC58                               --------->ANAC58                  --------->ANAC58                        <---------ICU4                   ----------            --------->ANAC58                          --------->AHL20(2)                 ----------->GT1            --------->ANAC58                --------->YAB1--------->YAB1       <---------ICU4 <---------ARR11(3) --------->YAB1    --------->TOE2(3)--------->WOX13(1)     --------->ICU4   caagaccatatggtaagcacaaggattatttaaactcagacctcaattttaagcgattaatcaacacaatcaacatcgcaatgtttacaagttgtgaaaa  128700                     <---------YAB1                   --------->AHL20(2)                                         --------->TOE1(3)                   --------->YAB1                                             <---------MYB59                  --------->ICU4     <---------YAB1                           --------->TOE2(3)           <----------ID1      --------->ARR14(2)   <---------ALFIN1     <---------MYB59         <---     <------ZmHOX2a(2)         <---------ARR14(2)  --------->MYB46(3)   <---------ANAC55(2)     <----    --------->ARR11(3)     ------->MYC3      ------>ZmHOX2a(2)          --------->ANAC55(2)     -----    <---------ARR11(3)     <-------MYC3 <---------WOX13(1)             <-------TEIL            <----- ->GT1<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------TOE2(3)             <---------------AtSPL8  <---------   aaacaagatcaaaacgagaaattataaaacgtggattctaagattgatcgcttcccaccgatgtgaatgagagtacataacctaaatcgatctacaggcg  128800                             --------->ATHB12                               --------->ARR11(3) ---NtERF2                  <-------TEIL        --------->At4g35610         <---------ARR11(3) -----At4g35610      <---------TOE2(3)          <---------At4g35610   ----------->GT1 ---->At4g35610      <---------TOE1(3) <------ZmHOX2a(2)            ------->GAMYB ----DEAR3(1)       <-----------GT1   --------->ARR11(3)         --------->MYB52(1)          ------->TEIL --RAV1(2)        <---------AHL20(2)  <---------ARR11(3)         ----------->RAV1(1)   <---------MYB52(1)   ctgatagaagtctagcaaattttaacgaaattcattggaagatcaaattgagctaagacttcataaacaacagagaaaaatctcacatcgttacgaacct  128900                                            ------>ZmHOX2a(2)                                           --------->CCA1(2)                                           <------ZmHOX2a(2)                                          <---------AGP1                                          <---------ARR14(2)                                          --------->ARR11(3)           ---------->DOF2            <--                                          --------->AGP1           <----------ID1                <---                                          --------->ARR14(2) <---------O2                        ----                         <-----------GT1  <---------ARR11(3) <---------TGA1a        <---------ANAC58                     ==================================================bZIP_DOF     <---------ANAC58                     <----------DOF2     <---------CCA1(2)   =====================bZIP_DOF       ----           --------->ARR11(3)           ----------->ARR10  --------->CCA1(2) ---------->DOF2  -------   ctggtattggagttatcttcttcctttgaactctccaaaactcagatctgctactgcttagagacgagagagacaaagcgaaagaggcgagtttgtgtcc  129000       <-----------ARR10 *TSS <---------GLK1(2) <-----------GT1 -------ICU4                                                                  --------->ARR14(2) ------YAB1                                                                   <---------ARR14(2) -->ZmHOX2a(1)                           --------->ANAC46                  <---------ANAC46        <- ----->ICU4     <---------ALFIN1     <-----------GT1                     <---------ANAC46     ------- --->ID1   -------->P              --------->YAB1           <---------At4g35610      <------------CBF   ttattaccgattctacccctacttgttggaatgacattaataccccctacatactatcaggcagtagatgggccatcgtgtatatggtattgggccttca  129100                          ----------->GT1                   <---------ANAC58                   <---------ANAC58                   <---------ANAC46              --------->ATHB51                                                                     --              --------->ATHB12                                                                     <-              -------->ATHB1                 *TSS                                                  -- -----------CBF<------------CBF          ------------>CBF           <----------DOF2             ----- ----->CBF   <---------YAB1    <------------CBF <-----------GT1 --------->GLK1(1)            ------>NtERF2   atattgtttagttgtattattgggtatgttgaaaattgagaacaccaatttgacatttttaaactgaattcttttcattcattctctctcatcgaggcca  129200                                                 <------NtERF2                                                 <---------MYB52(1)                                                --------->LBD16                                                ------>NtERF2                                               <---------ANAC46                                               <---------LBD16                                              <---------LBD16                                              --------->ATERF1(1)                                              <------NtERF2                                             --------->ABI4(2)                                             ------>NtERF2                                            --------->ALFIN1                         ---------->DOF2    ----------->HVH21                       <---------MYB52(1)  --------->ATERF1(1)                ------>NtERF2              ------->PIF5                --------->LBD16            <-------PIF5               --------->ANAC46           <---------ATERF1(1)              <---------LBD16             <---------DEAR3(2)              --------->RAP2.6(3)         <---------DEAR4(2)                                   <----- ------->HSFC1(2)   <------NtERF2        <---------DEAR3(1)                                  -------- --------HSFC1(2)  ------>NtERF2    <---------ANAC58               ---------->ID1            <------- ------->HSFB2a(1)<---------ALFIN1  <---------ANAC58<---------At4g35610                      -------- ----->DOF2 --------->GLK1(2)   <---------MYB52(1)  --------->At4g35610                  <-----------HVH21   aagcttccaaacaaattccggcaccggtagagccgtttgctcgccggtgccgggagctatcgttcccttgtcgctctcttctcaatggctatgtcatctg  129300                                             <----------DOF2     --------->WRKY38(1)                      <---------TOE2(2)  ---------->ID1          --------->WRKY12       --------->DOF5.7(2)                      <---------TOE1(2) <-----------GT1        --------->TOE2(3)       ------->MYC3             <---------ANAC58       <----------DOF2            --------->TOE1(3)       ------->MYC2 ------RAV1(1)--------->LBD16 <---------ANAC58           <---------ICU4          --------->ZAT14 ->At4g35610 --------->ANAC55(2)  ---------->ID1        <---------ATHB12--------->AtMYB61<-------TEIL --At4g35610 <---------ANAC46 <---------ANAC58   <---------CCA1(2)<---------WRKY18(1)  <-------MYC3 --->RAV1(2) <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->MYB46(3) <-------MYC2   gtgttctctattctcccgtgttcccatgtttcgcttgtcttttctccctttgtatccaaagattaccttgaccaccatacctctgaacacgttcacttct  129400                                                                              <---------GLK1(1)                                                      --------->ARR14(2)      --------->At4g35610                                                     <---------At4g35610      <---------At4g35610                                   <---------MYB46(3)--------->At4g35610      --------->GLK1(1)                     <----------DOF2    <-----------GT1------>NtERF2      --------->LBD16          --               <---------ARR11(3)--------->LBD16    <---------ATERF1(1) <---------LBD16          <---              <---------CCA1(2) <---------ANAC46   <---------DEAR3(1)   --------->RAP2.6(3)      ----            <---------DAG2   --------->AtMYB61    ------>ZmHOX2a(1)    --------->MYB52(1)     -------   tgtgctagttctccccttatcttctttgcgacctccgtggtttatccctctcctcggctccccttgaagtcaataccggcatctccctattcccctctgg  129500  Previous    Next  AGI:  At3g01340.1    Description:  protein transport protein SEC13 family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G30050.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73348.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 127362    to: 129001    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01345.1    Description:  Expressed protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28919.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944) Range:  from: 129145    to: 130756    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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