Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->SPL7                                                                                         ------>NtERF2                                                                                        <---------SPL7                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                      <------NtERF2                                                                                     <---------ORA47(2)                                                                                     <---------DEAR4(2)                                                                                     <---------RAP2.3(1)                                                                                     <---------RRTF1(1)                                                                                     <---------RAP2.6(1)                                                                                     ------>NtERF2                                                                                     <---------ATERF1(1)                                                                                     <---------ERF1                                                                                    <---------DEAR3(1)                                                                                    <---------RAP2.3(3)                                                                                    <---------RRTF1(2)                                                                                    <---------RAP2.3(2)                                                                                    <---------RAP2.6(2)                                                                                    --------->DEAR3(1)                                                                                    <---------ATERF1(2)                                                                                   --------->At4g35610                                                                                   <------NtERF2                                                                                   <---------ABI4(1)                                                                                   --------->ATERF1(1)                                                                                   --------->RAP2.3(1)                                                                                   --------->DEAR4(2)                                                                                   --------->DREB2C(1)                                                                                  <---------ATERF1(1)                                                                                  <---------DEAR4(2)                                                                                  ------>NtERF2                                                                                  <---------ORA47(2)                                                                                  <---------ERF1                                                                                  <---------RRTF1(1)                                                                                  <---------RAP2.3(1)                                                                                 <---------ATERF1(2)                                                                                 <---------DEAR3(1)                                                                                 <---------ANAC46                                                                                 <---------RAP2.3(3)                                                                                 <---------RRTF1(3)                                                                                 <---------RAP2.3(2)                                                                                 <---------RAP2.6(2)                                                                                 <---------RRTF1(2)                                                                                 --------->ATERF1(2)                                                                                --------->DEAR4(2)                                                                                --------->DREB2C(1)                                                                                --------->ATERF1(1)                                                                                <---------ABI4(1)                                                                                <------NtERF2                                                                                --------->RAP2.3(1)                                                                                <---------At4g35610                                                                                --------->At4g35610                                                                               <---------RRTF1(1)                                                                               <---------ERF1                                                                               <---------RAP2.3(1)                                                                               <---------ORA47(2)                                                                               <---------DEAR4(2)                                                                              <---------DEAR3(1)                                                                        <-----------RAV1(2)                                                                      ----------->RAV1(1)<------NtERF2                                                                     --------->MYB46(3) ----------->HVH21                                                                 --------->At4g35610--------->ATERF1(2)                                                                 <---------At4g35610--------->ALFIN1                                                                 --------->ATERF1(1)<---------RRTF1(3)                                                                 <------NtERF2<---------RAP2.3(3)                                                                 <---------ATERF1(1)<---------ANAC46                                                                <---------ATERF1(1)<---------At4g35610                                                               --------->ANAC58<---------RAP2.6(1)  -                                                               --------->ATERF1(1)<---------RAP2.6(1)                                                               <---------DEAR3(1)--------->DEAR3(1) <                                                               <------NtERF2  <---------RRTF1(2)    <                                                               --------->ANAC58------>NtERF2       <-                                                              ------>NtERF2   <---------RRTF1(3)   <-                      <---------ALFIN1                        <---------LBD16 --------->ATERF1(1)  <-                      --------->AtMYB61                      --------->ALFIN1 --------->ATERF1(2)  <-                    ----------->RAV1(1)                      <---------ANAC58 <---------RAP2.6(2) <--                   --------->RAP2.6(2)                       <---------ANAC58 <---------RAP2.3(2) ---          <---------ALFIN1                                  <------NtERF2     --------->ALFIN1    <--       ------>ZmHOX2a(2)    --------->AtMYB61               --------->ATERF1(1)<---------ATERF1(1)<--       ==============HOX2a_HOX2a                           <---------ATERF1(1)<---------ATERF1(2) ---       ================================HOX2a_HOX2a         <---------DEAR4(2)<---------ABI4(1)   <---     <---------ARR14(2)     ------->GAMYB          --------->ANAC58 <------NtERF2--------->ALFIN1----     --------->ARR14(2)  <---------ALFIN1          ----------->HVH21--------->At4g35610<---------ANAC46 ----------->RAV1(2)------>NtERF2         <---------DAG2  --------->ALFIN1   --------->ATERF1(1) <--- --ARR14(2)      ------>NtERF2            <----------DOF2 <---------DEAR3(1)--------->ALFIN1    <---- ->ARR14(2)   ------>ZmHOX2a(1) ------>ZmHOX2a(1)  --------->ANAC58--------->RAP2.6(2)--------->ATERF1(1)   tctccctgatcccctcctcggccaccacaacctcctcatcgacgcttttcagcacgacgggaggcgcggcagccacaggggcggcggcggcggacgaggc  41500                                                           --------->RAP2.3(1)                                                           <------NtERF2                                                           --------->ATERF1(1)                                                          ------>NtERF2                                                          --------->At4g35610                                                          <---------ATERF1(1)                                                          --------->ABI4(1)                                                          --------->LBD16                                                         --------->RAP2.3(2)                                                         --------->RRTF1(3)                                                         --------->RAP2.3(3)                                                         --------->RAP2.6(2)                                                         <---------ATERF1(2)                                                         <---------DEAR3(1)                                                         --------->DEAR3(1)                                                         --------->RRTF1(2)                                                         --------->ATERF1(2)                                                        --------->ORA47(2)                                                        <------NtERF2                                                        --------->RAP2.3(1)                                                        --------->ERF1                                                        --------->RAP2.6(1)                                                        --------->RRTF1(1)                                                        --------->DEAR4(2)                                                        --------->ATERF1(1)                                                       <---------DREB2C(1)                                                       <---------ATERF1(1)                                                       --------->ABI4(1)                                                       --------->At4g35610                                                       ------>NtERF2                                                       <---------DEAR4(2)                                                       <---------At4g35610                                                       <---------RAP2.3(1)                                                      --------->RAP2.3(3)                                                      --------->RRTF1(2)                                                      --------->RRTF1(3)                                                      --------->RAP2.3(2)                                                      --------->DEAR3(1)                                                      --------->ATERF1(2)                                                      --------->ANAC46                                                      <---------ALFIN1                                                      <---------DEAR3(1)                                                      <---------ATERF1(2)                                                      --------->RAP2.6(2)                                                     --------->RAP2.3(1)                                                     --------->ORA47(2)                                                     --------->DEAR4(2)                                                     --------->RRTF1(1)                                                     --------->ATERF1(1)                                                     --------->RAP2.6(1)                                                     <------NtERF2                                                     --------->ERF1                                                    <---------ATERF1(1)                                                    <---------RAP2.3(1)                                                    <---------DREB2C(1)            <---------RAP2.3(1)                     --------->At4g35610           <---------RAP2.6(2)                      ------>NtERF2           <---------RRTF1(2)                       --------->DREB2C(1)           <---------DEAR3(1)                       <---------DEAR4(2)          <---------LBD16                          --------->ATERF1(2)          <-------TEIL                             ------->GAMYB        <---------ARR14(2)                         --------->RAP2.3(3)                              <        --------->ARR14(2)                         --------->RAP2.3(2)                             --       <---------At4g35610                         --------->RAP2.6(2)                             --       --------->At4g35610                         --------->DEAR3(1)                              --     <-----------RAV1(2)                           --------->ANAC46                                >>    <---------At4g35610                            <---------ATERF1(2)                             >>    --------->At4g35610                           --------->ATERF1(1)                              <-    <------NtERF2                                 --------->RAP2.6(1)                              -- --------->At4g35610                              --------->ERF1                                   >> <---------At4g35610                              --------->RRTF1(1)               <---------AtMYB61- ----->NtERF2------>NtERF2                        --------->DEAR3(2)               --------->MYB52(2) ---------ATERF1(1)                               --------->MYB46(3)               --------->MYB111(2) ---------RAP2.3(1)                               --------->RAP2.3(1)              --------->MYB55(2) --------ANAC46                                  <---------ATERF1(1)               <---------MYB46(3) --------DEAR3(1)                                --------->ZAT2                    --------->MYB111(1) --------RAP2.6(2)                               <---------At4g35610             <---------ANAC58  >> --------RAP2.3(2)          <---------At4g35610  --------->At4g35610             <---------ANAC58  -- -------LBD16<---------LBD16--------->At4g35610 --------->DEAR3(1)          <------ZmHOX2a(1)      >> ------>ATERF1(1)        --------->LBD16       --------->MYB46(3)        <------NtERF2             -- -------At4g35610    --------->ARR14(2)        --------->ATERF1(1)      --------->LBD16           --- ----NtERF2<---------RAP2.3(2)                --------->At4g35610     <---------LBD16             --- ------>At4g35610 --------->ANAC58            <---------At4g35610    <---------ANAC46      <---------ALFIN1 ------RAP2.3(1)  --------->ANAC58            <---------ZAT2       ---------->DOF2<--------P     ---- ----->ALFIN1<------NtERF2<-----------RAV1(2) --------->ZAT2--------->DEAR3(1) <xxxxxxxxxxxxxxxxxxxxx ------ATERF1(1)<------NtERF2              --------->At4g35610     <---------DOF5.7(2)  <---------PCF5 -----DEAR3(1)<---------ANAC46 <-------TEIL<---------At4g35610  <--------------OsCBT<-------GAMYB<---   tgcggctgcagatgcggcggaagaaaccgcagatgcagacgaggtagcagcagccgccgccgccgaaggtaacgcggaggatgggttgttggaccactta  41600        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------ARR11(3)                                                                   ------>ZmHOX2a(1)      <---------ARR14(2)                                                                 ============      --------->ARR14(2)                                                                 ------>ZmHOX2a(2)   ------>NtERF2                                                                        <------ZmHOX2a(2) <------NtERF2                                                                          ============= ---------RAP2.6(3)                                                                     --------->GLK1(2) ------->ATERF1(2)                                                                     --------->ARR11(3) ------->RAP2.3(2)                                                                     <---------ARR11(3) ------->RAP2.6(2)                                                                     <---------ARR14(3) >>>>>>>AtERF-4                                                                        --------->ARR14(3) >>>>>>>AtERF-5                                                                        --------->ARR14(2) --------ATERF1(2)                                                             --------->ARR11(3) ------->DEAR3(1)                                               --------->ANAC58       <---------ARR14(2) >>>>>>>AtERF-1                                                 --------->ANAC58 --------->TOE2(3) ----->NtERF2                                             --------->MYB52(1)   <---------ARR11(3) >>>>>>>AtERF-2                                          ----------->HVH21    --------->GLK1(1)     - ------->ANAC46                                          --------->WRKY12<------ZmHOX2a(1)<---------LBD16 >>>>>>>AtERF-3                                        --------->At4g35610    <---------GLK1(1)  <--- ------->RAP2.3(3)                                     <---------At4g35610  ====================HOX2a_HOX2a ------>ERF1  ----------->RAV1(1)                      ----------->RAV1(2)  <------ZmHOX2a(1)   <---- ------>RAP2.3(1)                                      <---------ZAT2    =======================HOX2a_HOX2a ----->At4g35610                                       --------->ZAT2--------->ICU4  ----------->ARR10 xxsmallRNA(se3)      <-----------RAV1(1)   <----------DOF2  <---------SPL7 ===================HOX2a_HOX2a ------At4g35610<---------ALFIN1      <---------LBD16<-----------RAV1(2) ======================HOX2a_HOX2a   gccgccacgatctgtgcaacaccgatgttgctacagtttctacgggctttaatgctcagctgacggacgaaattaggaggaaatcttaagatcctggagg  41700                                                                                 --------->DEAR3(1)                                                                                 ----------->HVH21                                                                                 --------->TOE1(2)                                                                                 --------->TOE2(2)                                                                                --------->MYB46(3)  -                                                                                --------->DEAR3(2)  -                                                                              <---------ARR14(2)   --                                                     <---------DEAR3(1) --------->O2               <-                                                  --------->ANAC58      =============================                                                  --------->TGA1a       --------->TGA1a        <-----                                         <------NtERF2 <------NtERF2    <---------TGA1a        ======                                      <------NtERF2--------->MYB52(1)=============MYC_MYB ------>ZmHOX2a(2)                                     <---------ATERF1(1)             --------->DREB2C(2) --------->CCA1(2)                                    <---------DEAR3(1)------>NtERF2  --------->DEAR3(1)  <------ZmHOX2a(2)            --------->LBD16         <---------ANAC46--------->RAP2.6(3) <---------O2    <---------ARR14(3)           <---------LBD16         <------NtERF2  --------->ANAC46   --------->MYB46(3) <---------AGP1           <------NtERF2          --------->LBD16 --------->ANAC58   ------->GAMYB      --------->AGP1       <---------SPL7             ------>NtERF2   ----------->HVH21  --------->At1g77200--------->ARR11(3)       <-----------HVH21        <---------LBD16   <---------TGA1a    ----------->HVH21  --------->ARR14(2)      --------->DEAR3(1)     <xxxxxxxxxxxxxxxxsmallRNA(s)           --------->DEAR3(2)  <---------ARR14(2) ==HOX2a_HOX2a              <---------GLK1(1)     --------->O2      --------->MYB46(3)  <---------ARR11(3) ==HOX2a_HOX2a         <------ZmHOX2a(1) <-----------------------TaNAC69(2)   --------->ARR14(2)   -- -------->GLK1(2)    <---------TOE2(3)--------->ATERF1(1)        --------->MYB46(3)     --------->ARR14(3) ------KAN4(2)--------->At5g28300<---------LBD16  ===========================MYC_MYB   <---------GLK1(1) --ZmHOX2a(1)--------->LBD16--------->GLK1(1)     <---------O2   ------>ZmHOX2a(2)    ----------->ARR10   ataatccagcgtccccggtgaatgaggaagaaatcccggcggaggcatggacacgacggcgagatgatccaccgacgggagaaccgacgagatctggatc  41800                <------NtERF2         ---------->DOF2 --------->ANAC58 --------->ANAC58                            <---------ZAT18 -------->SPL7 --------->LBD16               <---------ZAT14 -------->RAP2.6(3)                   <---------------AtSPL3                             <---------GLK1(2) ------->ARR14(2)         --------->ALFIN1   --------->ZAT18                            --------->YAB1 --------ARR14(2)        <------ZmHOX2a(1) <------MYB83--------->YAB1                   <--------ATHB1 ===================bZIP_DOF   <------ZmHOX2a(1)       --------->ATHB12      <---------ANAC58 -ZmHOX2a(2) <---------LBD16<------ZmHOX2a(1)--------->ZAT14  <---------RAP2.6(2)      <---------ATHB12 ===============================HOX2a_HOX2a<------MYB46(1)   --------->RAP2.6(3)       --------->ICU4 ------->MYB52(1)      <---------TOE2(3) <--------P   --------->ICU4         <---------ANAC58   agaacggcattgaaagccggagattgaggaggaggagaagatggtagggcactggaatgatgagacggccattgttgtttcgtttctcaatgattctctc  41900                                     --------->ALFIN1                                    <-----------HVH21                <----------ID1                                   <---------ANAC58                  --------->ANAC58                                   <---------ANAC58       <------NtERF2             ---------->ID1                                   <---------ANAC46     <---------ANAC58        <----------DOF2                         <---------ANAC46               <---------ANAC58       <---------ANAC58                      <---------TOE2(3)*TSS <----------DOF2          --------->ANAC58  <---------MYB52(1)            <----------DOF2       <-------TEIL          <---------ANAC46       <---------ANAC58    --            <---------DAG2       --------->ALFIN1      <---------LBD16     <------------CBF      <---   gttctcttctctctctttttgtttgtggtttagaggtgcgtgagggctttctccatgggcgggtttttaagaagccaaattgctttgtcgttttgttttt  42000                                                            <-----------GT1                                                        <---------AHL20(2)                                                   <---------YAB1                                              ------>ZmHOX2a(1)                                           ---------->ID1<---------YAB1  --------->ANAC46 ------->MYB46(3)    <---------WRKY18(1)<----------DOF2 <---------AHL20(1) --------GT1 --------->TOE2(3)         <---------DAG2 <---------YAB1   <-----------GT1   aaccactctggtttacattaacttgaccagactaaaccatgccttttcctcttactattatttttctaattttctacgttacaaaaatagaatacgttta  42100                                                                         ----------->GT1                                                                         <---------ZAT6                                                                        <---------YAB1                                                                      <---------ICU4                                                                      --------->ATHB51                                                                      --------->ATHB12                                                                     <---------YAB1               <---------ANAC58                                      --------->ICU4               <---------ANAC58  <---------MYB46(3)                --------->YAB1               --------->ANAC55(2)  <---------MYB46(3)        <---------MYB111(1)     --------->GLK1(1)  <---------ATHB12                      --------->MYB46(3)    <---------GLK1(2)  --------->ANAC46         --------->WOX13(1) <---------ICU4              ------   ttgccagatttctacttacttatccaaacaatgagttgttgttgagttttcaatccaagttccaactactcattattgttaaacattcaatttcatgttg  42200                                                   <---------GLK1(2)                                             <---------SPL7         --------->AHL20(2)                                           ------->TEIL             <---------AHL20(2)                                           --------------->AtSPL3  --------->AHL20(2)                                           <---------------AtSPL8  <---------AHL20(2)                                   <---------RVE1(1)               <---------AHL20(1)                                   <---------CCA1(1)               --------->AHL20(1)                                  <---------ARR11(3)     <-----------GT1          ---------->DOF2   <---------AHL20(2)             --------->ARR11(3)<---------RVE1(1)   --------->AHL20(2)   --------->AHL20(2)       --------->At4g35610    --------->ARR11(3)   <---------AHL20(1)        ---  --------->AHL20(2)        <---------At4g35610    <---------ARR11(3)   <---------AHL20(2)     ------ ----->GT1                  ----------->RAV1(2)<-------TEIL<---------AtLEC2<---------YAB1   ---------   aaaattaaaatttgtacttacagattaatcacctgagatattttgaacgtacagattttttacatgaaatttattttatttttaaaaagagaacacatca  42300               <---------ANAC46             <---------ANAC46        ------>MYB83      <---------------AGL15      --------------->AGL15     ----------------->AGL1     ----------------->AG     <-----------------AGL1                                           <---------ZAT6     <-----------------AGL2                                       --------->ZAT14              ------   <-----------GT1                                                <---------ZAT14      --------->ANAC46 ------>AHL20(2)                                              --------->ARR11(3)  --------->GLK1(2) --->YAB1   --------->ALFIN1                                <---------TOE2(3)     <-----------ARR10 >ANAC46------>MYB46(1)                   <----------DOF2   <---------TOE1(3)    <---------GLK1(2)   taaatttaccaaatgtggtgtttttttgtttttgactatgacctctttttttttttttttttaaggtctgtagtcttcaaatagaatctaggcaactaca  42400  Previous    Next  AGI:  At3g01120.1    Description:  MTO1 (METHIONINE OVERACCUMULATION 1). Identical to Cystathionine gamma-synthase, chloroplast precursor (CGS1) [Arabidopsis Thaliana] (GB:P55217;GB:P92944;GB:P93038;GB:Q42550); similar to cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative [Arabidopsis thaliana] (TAIR:AT1G33320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15013.1); similar to Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum (GB:1QGN); similar to cystathionine gamma synthase [Fragaria vesca] (GB:CAA04772.2); contains InterPro domain Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; (InterPro:I Range:  from: 38766    to: 41939    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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