Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------------>MYB.PH3(1)                       --------->YAB1                            --------->ARR14(2)                            <---------ICU4                    <---------ARR14(2)                               --------->MYB46(3)                    --------->ARR14(2)                           --------->ANAC58             -------              --------->ANAC58           <-----------GT1         <---------MYB52(2)          <-------              <----------ID1<---------ARR14(2)               <-----------HVH21       <------ZmHOX2a(1) ---->AHL20(2)--------->ANAC46   <---------MYB52(1)  ----------->GT1------->TEIL ---------->DOF2 ---->YAB1    --------->ANAC58 ----------->GT1 <---------ATHB12  --------->ANAC58--------->MYB52(1)   aaaaaccagagtttaaacgccaaatttgcaaaaccgttacattttaccaatgaagaggttaaatgtcacgaaccaatattgactaaaggactccaataat  19566600                       --------->TOE2(3)                       --------->TOE1(3)                    <-----------GT1  <----------DOF2           <---------At4g35610      <---------ANAC58           <---------ZAT2    --------->YAB1       <---------MYB52(1)    <---------AHL20(2)    --------->LBD16                        <---------ANAC58 <---------ATHB12 <---------KAN4(2) <---------ANAC58   <----------DOF2                    <---------ANAC46 -->YAB1   --------->At4g35610<---------AHL20(2)  --------->RAP2.6(2)        ------->GAMYB<---------ANAC58 --ATHB12  --------->ZAT2    --------->AHL20(2)  <---------LBD16            --------->MYB46(3)   ccaataactgttaagctgagaataaccttaattatatggctttgttcaagagccggactttaaactcaatcggtttcaaccgaagataagttgcttgctc  19566700                                                                                                   <-                                                                                                   ==                                                                                    ------>ZmHOX2a(2)                                                                                    =================           ------>NtERF2                                                           ==================          --------->ANAC58                                                         --------->GLK1(1)          --------->ANAC58                                                         <---------GLK1(1)        <---------ATERF1(1)                                                        <------ZmHOX2a(2)       ----------->TGA1                                                           <---------ARR11(3)       ----------->HVH21                                          --------->ZAT2  --------->ARR14(2)      <-----------HVH21                                           <---------ZAT2  <---------ARR14(2)     --------->ANAC55(2)                                          <---------At4g35610             <--     <---------ANAC55(2)                                          --------->At4g35610            <---     <---------ANAC46                                          <---------ATHB12   --------->ARR11(3)<     <---------ANAC55(1)          --------->ARR14(2)    <---------ZAT18           <---------ARR14(3)-     <---------ANAC58             <---------ARR14(2)    <---------ZAT14          --------->GLK1(1)<--     <---------ANAC58           <---------MYB46(3)      --------->ZAT14          <---------GLK1(1)---   tgcaattgcgtgacgccttgggaaccaagataagtggttatgcccttaagaaaaccagagcaccaatgagctgagagtttgggagatctcttgcgatgag  19566800             --------->KAN4(2)           --------->ZAT14       --------------->AtSPL8                                                       <---------TGA1a  <---------YAB1                                                                    --------->TGA1a -----ZmHOX2a(2)                                                                    <---------O2 ========================HOX2a_HOX2a                                                <---------ANAC46 ===HOX2a_HOX2a                                                                     ================= ===HOX2a_HOX2a                                                                     <---------ANAC58 -------ARR14(2)                              --------------->AtSPL3    ======================bZIP_DOF ---ZmHOX2a(1)                  --------->ARR14(2)                      ---------->DOF2 ---------ICU4                  <---------ARR14(2)                   --------->AtLEC2             --- -------->YAB1                 <---------CCA1(2)                   <---------------AGL15       ------ -------ARR11(3)  ------>ZmHOX2a(1)          <---------ANAC46   <-----------GT1     <---------ANAC58 ------>ARR11(3) --------->TOE2(3)--------->MYB46(3)     --------->TOE2(3)          --------->O2 <---   gatcatgactcagtacattcctaaactattctcgtatccactgagttactcgtacaaatccataaatgaccatacaaagtagcctctcgtgtgaaaatag  19566900                                                                                               <-----                                                                                        <-------TEIL                                                                                 ----------->RAV1(1)                                                                                --------->REM1(1)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                               --------->ZAT14 <-----                                                                             <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                             --------->ANAC46  *TSS                                                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           --------->ZAT6   <--------                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        --------->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <--------                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <---------ANAC58--------->YAB1  <---------GLK1(2)                                                      <---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ARR14(2)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ARR14(2)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)<---------YAB1  --------->At4g35610                                         <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               --------->ANAC46<xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC46                               <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               --------->LBD16<-----------HVH21   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              --------->LBD16 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <---------LBD16<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ZAT14 ------                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <xxxxxxxxxxxxxxxxxsmallRNA(le3) <--                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->ARR14(2) <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <---------ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ZAT18<xxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->YAB1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)----------->GT1<xxxxxxxxxxxxxxxxxxsmallRNA(se3) =============================bZIP_DOF<xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ------>YAB1             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <---------------AtSPL8<-----------RAV1(2) ----->GT1         ---------->DOF2 <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ZAT18<xxxxxxxxxxxxxxxxxsmallRNA(se3) ------ZAT6  ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   tgataacaattaaaaatgaaaaaatgcgcatccagggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacaccagatgcgcttttt  19567000  --------->At4g35610                                   ------>ZmHOX2a(1)  <---------At4g35610                          ---------->DOF2 <---------YAB1                              <------NtERF2 ----YAB1                                   ------>NtERF2 ----AHL20(2)            --------->ZAT6     --------->LBD16                                         < --DOF2                <-----------GT1     <---------LBD16         --------->ANAC58                 < -DAG2            <---------YAB1           --------->LBD16         --------->ANAC58          -------- --->AHL20(2)  --------->AHL20(2)          <---------ANAC46 --------->YAB1                  <<<<<<<<< -------YAB1   <---------AHL20(2)         <---------LBD16  <---------YAB1           ---------->DOF2 <   attatgctgacaagtgttttattattaactctaacatttgttctgccgggaaagtttcctgatgatagtaagaaacagaacaactcgaaagagaagacaa  19567100          <---------ARR11(3)          --------->ARR14(2)          <---------ARR14(2)      <------ZmHOX2a(1)  <------NtERF2     <---------DOF5.7(2) ------>NtERF2      --------->MYB52(1)       <---------ZAT14                                    <---- ---------ANAC58  --------->ARR11(3)         --------->ZAT14            >>>>>>>>>TBF1    <---------ARR14(2) ---------ANAC46<---------YAB1          --------->ZAT18                 ------------------------>ANAC81 ---->CBF<------ZmHOX2a(1)              <---------ZAT14              >>>>>>>>>TBF1      <------ZmHOX2a(1) <<<<<<<<LFY    <---------TOE1(3)       --------->ZAT14    --------->At5g28300    <---------ZAT14 ---------ANAC58<---------TOE2(3)---------->DOF2       --------->MYB52(1)         --------->ZAT14   tggcgcgaggaggattttaagataacgaaaccagagaaagcctgcactgaagttagaaaacggtgaaggaagaagaagaaacagagtagaggaattggta  19567200                     <---------SPL7                    <---------TGA1a            --------->ANAC58                                                     xxxxxxxxxxxxxxxxxxxx            --------->ANAC58                                                     xxxxxxxxxxxxxxxxxxxx          ====================bZIP_DOF                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          ---------->DOF2                                                       xxxxxxxxxxxxxxxxxxxxx         --------->ALFIN1                                                 ----------->GT1        --------->At5g28300                      --------->AHL20(2)      --------->At4g35610      XXX      <---------ANAC46 <-------TEIL    <---------AHL20(2)           --------->DAG2               ----  <---------SPL7  ------->GAMYB       --------->AHL20(2)      <---------YAB1   ---------------------- --------->DEAR3(1) --------->TGA1a  XXXXXXXXXXXXXXXXXXXX>MIR844   ---------->DOF2              ----- -----DOF5.7(2)--------->MYB52(1) ----------->GT1<---------YAB1   <---------ATHB12xxxxxxxxxxxxxxxxxxx   acgccgtagcggtgaagcaacgacgtccgtcttaagtcgataaaatttcttataaatatgttttatcaataaagcagcgaaaaaaaaaaaaaaaaaaaaa  19567300                                                                                               ------                                                                                               ======                                                                                               <-----                                                                                               ------                                                             ==================================bZIP_DOF                       --------->ICU4                   --------->ATHB12                       <-----                       <---------YAB1                  --------->ICU4                          ======      <---------ARR14(2)--------->YAB1               <---------ICU4                   <-----------HVH21      --------->ARR14(2)<---------ICU4               -------->HAHB4                  ================ x>smallRNA(si3)    <---------YAB1                   --------->YAB1                  --------->TGA1a >smallRNA(le3)    <-------GAMYB               <------MYB83  ---------->DOF2         --------->O2 >smallRNA(si3)   <---------MYB46(3)           <------MYB46(1)                       ================ XXXXXXXXXXXXXXXXX>MIR417 <---------YAB1      --------->MYB59======================================== ----->DAG2       <------MYB83           --------->ICU4<---------YAB1            --------->ANAC58 -->ANAC81        <------MYB46(1)   <---------ZAT6  <---------YAB1               --------->ANAC58 ----->DOF2  ------>ZmHOX2a(2)      ----------->GT1 --------->ICU4       <------ZmHOX2a(2)  --------- x>smallRNA(le3)  ----------->GT1 ----------->GT1   <---------ATHB12    --------->ARR11(3) <---------   aagcagcgaattcgatcggatggttattattacagagagtgtaaaaatttggtaatgatgattaaaagtcttgggatcatggaacccaagtcgggtcacg  19567400                    <---------ANAC58                    --------->ANAC55(2)   ---------->DOF2  <---------ANAC55(1) --->O2             <---------bZIP60(2) =============bZIP_DOF ----TGA1a          <---------ANAC55(2) --->TGA1a          <---------ANAC58          --------->ZAT14 ----O2---------->DOF2                        <---------ZAT14 =============bZIP_DOF ------------------>SPL14   <-----------RAV1(1)                     --------->MYB46(3) =============bZIP_DOF <-----------HVH21 ------->TEIL                             <---------YAB1 ====bZIP_bZIP      <---------ANAC46   <---------WRKY18(1)                        --------->ICU4 ====bZIP_DOF    <---------MYB52(1)  <----------DOF2                   <------NtERF2      --------->ANAC46 -->HVH21   --------->ANAC58      --------->ARR11(3)                   ---------->ID1   <-----------GT1 --HVH21    --------->ANAC58      <---------ARR11(3)       ----------->HVH21   <-----------GT1   agggctaaagaaagaagccattacgtgtccgttcaagagcttgaacgttgcactgttggacttgacacatctcggcgttttatactgattaaacgaccct  19567500  Previous    Next  AGI:  At2g47730.1    Description:  ATGSTF8 (GLUTATHIONE S-TRANSFERASE 8); glutathione transferase. Identical to Glutathione S-transferase 6, chloroplast precursor (GST6) [Arabidopsis Thaliana] (GB:Q96266;GB:O82242;GB:Q4PL91;GB:Q9FUT2); similar to ATGSTF2 (Arabidopsis thaliana Glutathione S-transferase (class phi) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT4G02520.1); similar to glutathione S-transferase [Vitis vinifera] (GB:ABK81651.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like (InterPro:IPR010987); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); cont Range:  from: 19565270    to: 19566533    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g47740.1    Description:  pre-tRNA. tRNA-Gly (anticodon: CCC) Range:  from: 19566925    to: 19566995    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g47750.1    Description:  GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9). Identical to Putative indole-3-acetic acid-amido synthetase GH3.9 (GH3.9) [Arabidopsis Thaliana] (GB:O82243); similar to GH3.17, indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT1G28130.1); similar to Probable indole-3-acetic acid-amido synthetase GH3.11 (Auxin-responsive GH3-like protein 11) (OsGH3-11) (GB:P0C0M3); similar to hypothetical protein OsJ_024527 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41044.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39979.1); contains InterPro domain GH3 auxin-responsive promoter (InterPro:IPR004993) Range:  from: 19567197    to: 19570261    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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