Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 ----------->GT1                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                           <---------TOE2(3)                                                                         <---------AHL20(2)                                                                     --------------->AGL15                                                                     <---------------AGL15                                                                    <-----------------AGL2     --------->YAB1                                                 ----------------->AGL2 ---->YAB1                                                          ----------------->AGL3 ---->TOE2(3)                                                   <---------ANAC58 ----->GT1             --------->ZAT14                         <---------At4g35610 ---TOE2(3)            <---------ZAT14                         --------->At4g35610   <---------TOE2(3) --ICU4     ----------->GT1                          --------->AHL20(2)  --------->AHL20(2) ->YAB1     <---------ANAC55(2)         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)---------->DOF2 >ICU4 <---------CCA1(2)         ------------------------>ANAC81<---------ANAC58    ---------->DOF2   ttaatactcatatcatgtaaatcactgaagtgcaaattcaaaaaaaaaaaaaaaaaaaaatggtctgcttgccatttaaagatgtttaaagatggagtaa  19479400                                                                                                   <-                                                                                             <-------                                                                                            ---------                                   <---------AHL20(1)                                       ---------                                   <---------AHL20(2)                                   --------->AHL20(2)                                   --------->AHL20(2)                                 --------->ANAC58                                   --------->AHL20(1)                                 --------->ANAC58                                   <---------ARR11(3)  --------->YAB1       <---------AHL20(2) ------             ----------->GT1       --------->ARR11(3) <---------YAB1        --------->AHL20(2)<------      --------->ANAC46          --------->AHL20(2)<---------CCA1(2)        --------->AHL20(2)--------   gtatatatacacaagtcgtaaaatcaaacacaaataatatattgacaaactcatatatcataatgtatacataccaatttaaatccacaagaaaatatca  19479500                      <-----------GT1                <---------ALFIN1                ----------->RAV1(1)         --------->AHL20(2)                ------->GAMYB               --------->AHL20(1) --------YAB1  --------->MYB46(3)           <---------AHL20(2) --ARR11(3)   ------>MYB83                  <---------AHL20(1) >CCA1(1)     -------->P                --------->AHL20(2) >RVE1(1)     ------>MYB46(1)           <---------AHL20(2)          <----------DOF2             ----- --->YAB1   --------->AtMYB61        <---------ICU4            <----------DOF2                 ------ ---YAB1  >>>>>>>>>MYB2           --------->YAB1            <-----------GT1              --------->ZAT6 ->ARR11(3)--------->MYB46(3) <-----------GT1              <<<<<<<<<<GT-3b        <---------ARR11(3)-   tatgaatgagaaaaccaaccacatttacaattttactcatatttattttattgttttatatttttcttttctttttgatgagaatgtcttaacacaatta  19479600            <---------CCA1(1)                    ---------->DOF2            <---------RVE1(1)    ------->TEIL  <---------------AGL15                              ---           <---------GLK1(2)     --------->GLK1(2)                                                ---           --------->ARR11(3)   <---------ARR14(2)                                <---------AHL20(2)           <---------ARR11(3)   --------->ARR11(3)                                --------->AHL20(2)       ---------->DOF2--------->AHL20(2)       <---------HSFB2a(2)  <---------ZAT14          <-------      <---------AHL20(2)        --------->ARR14(2)--------->DAG2    <---------ZAT18         --------- ---->ARR11(3)      ===========================================MADS_MADS     --------->AHL20(2)  ---- --->AHL20(2)       --------------->AGL15      --------->HSFB2a(2)  --------->ZAT14        ---------- ---------->GT1     <---------------AGL15      --------------->AGL15--------->ZAT18      ------>ZmHOX2a(1)   tctagtatataaagattttttccaaaaaatagaagaacctgttgattttctaaaagtagaagaaaataagtgcagtccataaaataaaatcctataaaaa  19479700                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                              --------->GLK1(1)                                                                       <------NtERF2                                                                      <---------MYB46(3)                                                                     <---------DEAR3(1)                                                                   <---------ANAC58                                                                   <---------ANAC46                                                                   <---------ANAC58   --------->ZAT6                                                 <---------MYB46(3) ------>TOE2(3)                                                   --------->MYB55(2) -------->GT1                                      *TSS         <---------WOX13(1) --AHL20(2)                          --------->ZAT14          --------->ATHB12<---------GLK1(1) >YAB1    --------->GLK1(2)          --------->At4g35610      -------->HAHB4 <---------ARR11(3) <---- ------->GT1 <----------DOF2         <---------At4g35610     <---------YAB1  --------->ARR11(3) ----- ->TBP   <---------GLK1(2)        --------->At4g35610        --------->ICU4<---------TOE2(3)    -----   tgttaaaactagattcttttttaaaaaactaaaatttgctgcagacatctaaaattttcgaaaatgattgggtggctaagatttcttatccactagaaaa  19479800           <---------MYB52(1)           --------->DOF5.7(2)                          --------->ARR11(3)      --------->ZAT18 -----ARR14(2)                                          <---------ARR11(3)      <---------ZAT18 ---->ARR14(2) --------->ZAT6                         --------->DAG2       <---------ANAC58 ---->GLK1(2)<---------DOF5.7(2)      ---------->ID1---------->DOF2        <---------ANAC58 ---------   tccagtgagtcccgttaactctcttctcttctctagtcttgtcttctattatgcaaaaggtcttcttggccatggatacttgtgctctagtaatccatca  19479900                                                                                          --------->At4g35610                                                                                          <---------At4g35610                                                                                          <---------ZAT2                                                                                          --------->ZAT2                                                                                       ==============                                                                               ----------->HVH21                                        <<<<<<<<<TBF1                        ========================                                      <------------------------ANAC81 =======================HOX2a_HOX2a                                     <<<<<<<<<TBF1                    ------>ZmHOX2a(1)------>ZmHOX2a(2)                              <---------ARR11(1)                      ========================HOX2a_HOX2a                              <---------ARR14(2)                  <---------ARR14(2)  <------ZmHOX2a(2)                              <-----------ARR10                   --------->ARR14(2)  ===============                              <---------ARR11(3)      <----------DOF2 ==============HOX2a_HOX2a       --------->ANAC58       --------->ARR14(2)    <---------At4g35610     <-----------HVH21       --------->ANAC58       --------->ARR11(3) <---------At4g35610<---------ICU4   --------->ARR14(2)   <-----------HVH21         <---------CCA1(2)<<<<<<<<<TBF1   --------->LBD16<------ZmHOX2a(2)   <--- >WOX13(1)              ------>ZmHOX2a(1)  <<<<<<<<<TBF1     ----------->RAV1(2)     <---------ARR14(2)   gtctctgtctcgcatcaaactttctcctcccaaatcttcttcttcttcttcttctgctttctcccctgaatccttaccgatcagacggatcgagctgtgt  19480000                    <---------ANAC46                   <------NtERF2                   --------->ATERF1(1)                   --------->RAP2.3(1)                  ------>NtERF2                  --------->LBD16                 --------->RAP2.3(2)                 --------->RAP2.3(3)                 <---------ATERF1(2)                 --------->DEAR3(1)                 ------------------>SPL14                                                     -------                 --------->ATERF1(2)                                                          -------                --------->ATERF1(1)                                                          --------                --------->RAP2.3(1)                                                         <--------                --------->DEAR3(2)                                                       <-----------        <----------DOF2                                                                 <---------ICU4    <------ZmHOX2a(1)<---------SPL7                                                 --------->ICU4 --------->LBD16<---------RAP2.6(2)                                                 <---------YAB1 <---------HSFB2a(2)--------->DEAR3(1)                            --------->At4g35610<---------ICU4 <---------LBD16--------->ORA47(2)                    --------->LBD16        <---------YAB1--------->TOE2(1) ==========HOX2a_HOX2a                               <---------ANAC46   <---------At4g35610--------->TOE1(1) ==========HOX2a_HOX2a          --------->TOE1(2)  ------>ZmHOX2a(1) <------ZmHOX2a(1) <---------YAB1 ==========HOX2a_HOX2a --------->SPL7          --------->AtMYB61  <---------At4g35610--------->YAB1 ------ARR14(2)<---------ATERF1(1)       --------->MYB52(1)       <------NtERF2   --------->YAB1 <---   ttccgaggagctatatgtgccgccgtacaaagaaactacgaagaaacgacctcctccgtggaagaggcagaggaagatgatgagtcatcatcatcgtacg  19480100                                <------NtERF2                               ------>NtERF2                               --------->LBD16                               <---------MYB46(3)                           <---------DEAR3(1)                         <---------ARR14(2)                         --------->ARR14(2)                                         <---------ANAC46                         --------->MYB52(1)          <---------DAG2                 --------->TGA1a                     --------->At4g35610             <---------MYB59                <---------O2            <---------YAB1--------->SPL7             --------->TOE1(3)<---------DEAR3(1)    --------->ZAT18 ------------------>SPL14         --------->TOE2(3)<---------RAP2.6(2) -->SPL7    ==================================HOX2a_HOX2a     --------->ALFIN1      --------->O2 -->SPL1(2) <------ZmHOX2a(2) <---------ANAC46      ----------------->AGL1          <---------TGA1a ->SPL1(1) <---------ARR11(3) --------->ALFIN1  <---------ANAC58    <------ZmHOX2a(1)    <---------PCF2 -SPL7     --------->ARR11(3) <---------DEAR3(1)<---------ANAC58 <---------------AtSPL3<---------TOE1(2) -------SPL14--------->ATHB12<---------LBD16   --------------->AtSPL8--------->RAP2.6(3)<---------DEAR3(2) ------------------WRI1 <---------SPL7 <------ZmHOX2a(1)    <---------ANAC46      <-----------HVH21   gagaagtgaacaagatcattggaagccgaacggcgggggaaggagccatggagtaccttatcgagtggaaggacggccattctccgtcgtgggttccatc  19480200                                                    <---------ZAT2                                                    <---------At4g35610                                                    <------NtERF2                                                    --------->At4g35610                                                 <------NtERF2                                <------ZmHOX2a(1)                                               --------->ANAC58                          <---------HSFB2a(2)                                               --------->ANAC46                          ------>ZmHOX2a(1)                                               --------->ANAC58--------->DEAR3(1)      ----------->RAV1(2)                       <---------ANAC46        <---------DEAR3(1)                   <---------At4g35610                       --------->ETT(1)        <---------ATERF1(2)                  <---------ZAT2          <---------At4g35610                 --------->RAP2.6(3)       --------->ANAC58 --------->HSFB2a(2)          --------->ZAT2   <---------SPL7     --------->SPL7  --------->DEAR3(2)    --------->At4g35610          <---------ZAT2 <------NtERF2        <---------ORA47(1)------>NtERF2  ----------->HVH21          --------->At4g35610               <---------SPL7---------->DOF2    --------->bZIP60(2)         ----------->RAV1(1)    --------->ANAC46<---------ATERF1(1)     --------->ANAC58<---------LBD16   --------->REM1(1)<-----------RAV1(1)  <------------------SPL14<------NtERF2<-----------HVH21  <-------TEIL      <---------ZAT6 <---------ALFIN1 --------->ZAT2   --------->ZAT2 --------->ZAT2   gagctacatcgcagcagacgtagtgtcggagtacgagacaccctggtggacggcagctagaaaagccgacgagcaggccctgtcacagctcctggaggac  19480300  Previous    Next  AGI:  At2g47450.1    Description:  CAO (CHAOS); chromatin binding. Identical to Signal recognition particle 43 kDa protein, chloroplast precursor (CAO) [Arabidopsis Thaliana] (GB:O22265;GB:Q93V50;GB:Q940I7;GB:Q9SAU3); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G03430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73168.1); contains InterPro domain Chromo domain-like; (InterPro:IPR016197); contains InterPro domain Ankyrin (InterPro:IPR002110); contains InterPro domain Chromo domain; (InterPro:IPR000953) Range:  from: 19479751    to: 19481384    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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