Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------ANAC58                                           ----------->GT1                       <----------DOF2                                               --------->ARR14(2)                  --------->RAP2.6(3)----------->ARR10                  --------->LBD16  <------MYB46(1)                 --------->MYB52(1)<---------ANAC58                    <---------ANAC55(2)                 --------->ARR14(2)<---------ANAC58                <---------WRKY18(1)   <------MYB83            <---------ATHB12  <---------ANAC58                    ----------->HVH21  <---------ARR14(2)   actctcttgcagtaatcaagaacggctttgttgtttggcgagatgctcgagcccatgtttacttcggtttgacccgtgaagttagacgatttggttaatt  19333100                                                                                              -------                                                                                     <-----------HVH21                                                                                  <----------DOF2  --                                                                          =======================MYC_MYB                                                                          ===================bZIP_DOF         <---------ANAC58                                                 <---------TGA1a     <------         <---------ANAC46                           <---------WRKY18(1)   --------->TGA1a    --------         <---------ANAC58                   ------>ZmHOX2a(1)             <---------O2   <-------GAMYB <----------DOF2 ---------->DOF2  --------->ATHB12 ----------->HVH21      --------->O2 --------->ETT(1)   cgtcttttgtagcgagcatgaaagccttgatcagcttgtttgggtcctcgctcttgaccggctcgagagttttgacacatgaggctttgtcggatgtcga  19333200        <---------ANAC58                                                                  -----------        <---------ANAC46                                                          <---------GLK1(1) -->ETT(2)                                                          --------->MYB46(3) ------>NtERF2 --------->GT1    <----------DOF2                              --------->ANAC58   <---------At4g35610 ---ETT(2)    --------->MYB46(3)    <---------GLK1(2)      <---------YAB1  ------>ZmHOX2a(1)       <- ->DDF1 <---------ANAC58  <---------LBD16        --------->ICU4--------->ANAC58   --------->At4g35610   ctggcaaattccttgaaccgctttcatttggggagacagattagcatcgccatttttgtttatgaaggcaacgactcctatggcaactccgactattaag  19333300                                                                                             --------          <------NtERF2         <--------HAHB4                                               --------         ------>NtERF2          <---------ICU4                                             <---------ARR14(2)       <---------ABI4(2)        --------->YAB1       <------------------------ANAC81       --------->ARR14(2)       --------->ZAT18         <---------ATHB12  <------------------------ANAC81  <------ZmHOX2a(2) -      --------->ATERF1(1)    --------->WOX13(1) <---------MYB52(1)               <---------ARR14(2)<- --------->ALFIN1      <---------DAG2      <-----------GT1                       --------->ARR14(2)<- ---->AGL15            <----------DOF2   <------------------------ANAC81<-----------GT1  --------->LBD16 -----ZmHOX2a(1) --------->AtMYB61  <---------AHL20(2)              <----------DOF2    <---------LBD16   aggatggaggccaccgagaccacaacttttccaatcatttttttttttctgtttttttttttttttggttcttttttctctccgatccctccggatttat  19333400                                                                                  <---------HSFB2a(2)                                                                               --------->GLK1(2)                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                              <---------GLK1(2)                                                                           <---------WOX13(1) ->ICU4                                                               --------->YAB1 ->AHL20(2)                                                         <------------CBF ---------->GT1                                                 --------->GLK1(2)<---------LBD16 --------TOE2(3)                 ---------->DOF2                <---------ARR11(3)--------->HSFB2a(2) --------TOE1(3)      <----------DOF2            <---------WOX13(1)*TSS <---------YAB1    <----------   taaggttaatcggagagggagaggctttattagattaaagccaaattgttgaatgacttaggccagtatctattgtgatggattctggaggtttatatag  19333500                            <---------ANAC58                            <---------AtLEC2                            <---------ANAC46                     --------->MYB46(3)                            <---------ANAC58                  <---------WRKY38(1)              ======                        <---------ANAC58                      <---------WRKY12             --------->DAG2            <---------------AGL15                             <---------WRKY45            ===========            --------------->AGL15                            --------->WRKY18(1)    <------MYB46(1)           ----------------->AGL2                  <---------WOX13(1)               ----------->GT1           <-----------------AGL3      <---------ANAC58     <-----------HVH21       <------MYB83           <-----------------AGL2      <---------AtLEC2     <---------PCF2         --------->MYB59 <---------DAG2         <---------ANAC58          <------------CBF      <---------ANAC46  ---------->DOF2 <----------DOF2   ----------->GT1     <---------ANAC46  --------->ALFIN1       <---------ARR14(2) -TBP      ----------------->AGL3      <---------ANAC58<-----------RAV1(1)    --------->GLK1(2)<-----   aagctttttgaattctaaaattagtaacttgcatggattttgcatggagagggattgatgtgggtcaacgaatggctgagaatatttggtcaaaaagctt  19333600                       ========================bZIP_DOF                       <---------ANAC46                       <---------O2                       <---------bZIP60(1)                       --------->O2                       <---------bZIP60(2)                       --------->TGA1a                       <---------TGA1a                       --------->bZIP60(1)               <---------At4g35610                --------->TOE2(3)          <---------TOE2(3)     <----------DOF2 <---------TGA2(2)           --------->ANAC58           --------->MYB52(1)     ============================bZIP_DOF        ----------->GT1    <---------ARR11(1)  <-----------GT1   ----------->TGA1             --------->ANAC58   <-----------ARR10        <------- <---------AHL20(2) ----------->HVH21           ------->TEIL        <---------ARR11(3)   <---------MYB52(1) <-----------GT1   <-----------HVH21    <------ZmHOX2a(1)           --------->ARR14(2)  --------->TOE2(3) ================================bZIP_DOF      --------->MYB52(1)  <---------CCA1(2)   --------->ANAC55(2) ================================bZIP_DOF     <---------SPL7  <---------ARR14(2)      <---------TOE2(3) -----DOF2     <---------ZAT2       ---------->DOF2           --------->ARR14(2)     <-----------GT1   tatttaactttcgctggagctcgtgacgtcgaacttagaaaaggatgccgaacgtaaatttgcagttccaaatcttactaagggtatttacgttatttca  19333700                                                                                          <---------YAB1                                                                                    <---------------AGL15                                                                                    --------------->AGL15                                                                                   ----------------->AG                                                                                   <-----------------AG                                                                                   <-----------------AGL2                                                                                   ------>ZmHOX2a(2)                                                                                   <-----------------AGL3                                                                                   ==================                                                                                   ==================                                                                                   ----------------->AGL3                                                                                   ----------------->AGL2                                       --------->YAB1 ------>ZmHOX2a(1) ----------->GT1<---------ARR14(2)                                      <---------YAB1  ====================================HOX2a_HOX2a      <-------TEIL              <----------DOF2--------->ICU4           <---------At4g35610   <---------ANAC58          <-----------GT1 --------->ATHB12         <-----------RAV1(2) <---------TOE2(3)   <---------ANAC58      <------ZmHOX2a(1)   <---------ICU4         <-----------HVH21  --------->ARR14(2) ----GT1               <---------TOE2(3)  --------->YAB1 <---------YAB1 --------->At4g35610----------   atcttacgtccatatatatggaatttaggattaactttctataatagtcattagtccttactataaacaaggtcaggtgaaatgatccaaatatggttaa  19333800                                           --------->MYB52(1)                                      <---------------AGL15                                   <------                     <-----------GT1  --------------->AGL15                        <---------YAB1        <---------AHL20(2)           <-----------------AGL2                        <---------TOE2(3)       --------->AHL20(2)            <-----------------AGL3                  <---------AHL20(1) =====================================================MADS_MADS              --------->AHL20(1)  ---- =====================================================MADS_MADS        ----------->GT1       <------- ->GT1 <---------AHL20(2)   <---------ANAC55(2)  <---------GLK1(1)     <---------ZAT6  ----------->GT1   tttttcttatttattatctaatttttcattacttaaaattctaaataagggatttgtgtaacaaatcgacattgtgttatatattaagtttgtgaaaatc  19333900     <---------YAB1         --------->MYB52(2)   --------->YAB1         <---------MYB52(1)                                                      ---   <---------ICU4         <--------P                                                         --------  --------->ICU4        <---------MYB46(3)                 <----------DOF2                   <------- ---ARR14(2)           <---------ATHB12                 <-----------GT1              ----------->GT1 ----->TOE2(3) <---------YAB1              <---------CCA1(2)                  --------------->AGL15 --GLK1(1)     --------->ICU4     <-----------GT1       <---------AHL20(2)    <---------------AGL15 >   cctaattatcaattgacattattcaatggttagtttttacatcgtatatcaaacgtattaactttctattacttcaaattctaaaaattgaaaatttaaa  19334000  Previous    Next  AGI:  At2g47030.1    Description:  VGDH1; pectinesterase. Identical to Pectinesterase-4 precursor (PME4) [Arabidopsis Thaliana] (GB:O80722;GB:Q5MFV7;GB:Q8H194;GB:Q9T0P8); similar to VGD1 (VANGUARD1), pectinesterase [Arabidopsis thaliana] (TAIR:AT2G47040.1); similar to VGDH2 (VANGUARD 1 HOMOLOG 2), pectinesterase [Arabidopsis thaliana] (TAIR:AT3G62170.1); similar to Pectinesterase (Pectin methylesterase) (PE) (GB:Q42608); similar to Probable pectinesterase precursor (Pectin methylesterase) (PE) (GB:P41510); similar to pollen development related protein [Brassica rapa subsp. chinensis] (GB:ABC25451.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains In Range:  from: 19331303    to: 19333467    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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