Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->At4g35610                                                --------->GLK1(2)                                                --------->ARR14(2)                                                <---------ARR14(2)                                               <---------GLK1(2)                                             --------->ANAC58                                             --------->ANAC58                                      <---------ICU4                  --------->At4g35610                                    --------->GLK1(2)                 <---------ZAT2                                    --------->ARR14(2)                --------->ZAT2   <----------DOF2                  <---------ARR11(1)                <---------At4g35610  <---------ANAC58                  <-----------ARR10            --------->ANAC58  <---------ANAC58                  ------->TEIL<-----------ARR10--------->ANAC58  <---------ANAC46                 <---------ARR14(1)            --------->ANAC46 --------MYB52(1)                  <---------CCA1(2)           <---------ALFIN1          <----------DOF2 --ANAC58         <---------MYB52(1)<---------ARR14(2)         --------->ANAC46   --------->YAB1 --ANAC58---------->DOF2<----------DOF2    <---------AtLEC2  <-----------GT1  <---------AHL20(2)   cgttgcttttgaaaagaaccgttgttctttggtcttcgaatctttgcaagaatctgcccattttcacacaccagctccatataatcttcatcttttaatc  19304500                                                                                    --------->YAB1                                                                            ----------->RAV1(1)                                                                           ----------->HVH21             <---------ANAC55(2)                                           --------->DEAR3(1)             --------->ANAC55(2)                                           --------->At1g77200             <---------ANAC46                                              --------->DEAR4(1)             ----------->GT1                                               --------->MYB46(3)             --------->ANAC58                                              --------->DREB2C(2)             --------->ANAC58                         <----------ID1      --------->DEAR3(2)     <---         <-----------HVH21                        <------ZmHOX2a(1)    --------->MYB46(3)        ----    ---------->DOF2                              --------->At4g35610  --------->ANAC46     <---------ZAT18 --------->ANAC58     <-----------GT1          <-----------RAV1(2)    --------->ANAC58     --------->ZAT18 --------->ANAC58--------->AHL20(2)    --------->AHL20(2)             --------->ANAC58---------->DOF2   tgcaagaaaagagtcacgtataaataacctattaacaaaaaaaaaatagtcaggagaagacaaaattgtttcaagcaccgacagaaccataagcgcccat  19304600                   --------->ARR14(2)                   <---------ARR14(2)               <-------MYC2               ------->MYC3               <-------MYC3                 --------->ALFIN1          --------->ANAC46               --------->DAG2    --------->YAB1          --------->ANAC58         ----------->GT1        <---------YAB1                           --          --------->ANAC58  <---------HSFB2a(2)         --------->YAB1<----------DOF2  <---------YAB1 ------ICU4    ------->MYC2 --------->HSFB2a(2)         --------->TOE1(3)        --------->ATHB12 <-- ----->ATHB51------->TEIL<---------YAB1 ---------->DOF2 --------->TOE2(3)      <---------TOE2(3)-----   tatttcaaaaccacgcatgtgtatatgtttatagaagtcgcaaaaagtgtagatgaaaccataataaacttactttggtttaatgtttgatgatggagaa  19304700            <---------At4g35610            --------->At4g35610          <-----------RAV1(2)      <------MYB83      <------MYB46(1)       <---------TOE1(3)                                 <----------DOF2     --------->MYB59       --------->MYB52(1)                           <---------ANAC58  --------->ATHB12     <---------YAB1                                   <---------ANAC58    <-------- <---------YAB1     <---------YAB1                <---------ZAT14     <-----------GT1    <---------LBD16 ------->YAB1     --------->YAB1                  --------->ZAT14   <----------DOF2     <-----------GT1 -------ATHB12   --------->ICU4      <---------ANAC58           <----------DOF2        <-----------GT1 ---->GLK1(1)    <---------YAB1      <---------ANAC58      ---------->DOF2  ---------->ID1 --------->LBD16   atcatgtttggttcagatgatgatgatgctaagggttttgcttccattgaagtaaactgaacaaagctttctttacttgtctttttttttttccggtttt  19304800                                                                                         <------MYB46(1)                                                                                         <---------DEAR3(2)                                                                                         <---------MYB46(3)                                                                                         <------MYB83                            --------->ZAT14                                     --------->AHL20(2)                            <---------ZAT14                                     <---------AHL20(2)                     <-------TEIL                                             <---------AHL20(2)                    --------->GLK1(2)                                         --------->AHL20(2)                    --------->CCA1(2)                                       --------->AHL20(2)                    --------->ARR14(1)                                      <---------AHL20(2)                   --------->ARR11(1)          <---------ANAC58           --------->AHL20(2)                   --------->ARR14(2)          <---------ANAC58         --------->AHL20(2)<-------GAMYB                   <---------ARR14(2)       <----------DOF2     --------->At4g35610     <---------DREB2C(2)    ----------->GT1<---------GLK1(2)   <<<<<<<<<MYB2     <---------TOE2(3)<---------AHL20(2)   *TSS -MYB52(1)       ----------->ARR10<----------DOF2    <-------GAMYB----------->RAV1(1)   <---------DEAR3(1)   tgtgaattgtagaatcagagagattcggacttcacactttggttttctttcttggggttaatgaagagcagcatatatatatatatatagtcggttgtat  19304900                              <---------WOX13(1)                             <------------CBF                                            <---------YAB1                            --------->ATHB12                                           <---------ICU4                     --------->YAB1                   --------->ZAT18            ----------->GT1     <---------ARR14(2)   <---------WOX13(1)          <---------ZAT18     --------->TOE2(3)     --------->ARR14(2)  <------------CBF         <---------AtMYB61     <---------YAB1--------->ICU4     --------->KAN4(2)  --------->ATHB12  --------->ARR14(2)      <---------AHL20(2)  <---------YAB1    <----------TaMYB80 <---------YAB1     <---------ARR14(2)     <---------AHL20(1)<---------YAB1   ------->TEIL <---------AHL20(2)       <------ZmHOX2a(1)      <---------CCA1(2)--------->YAB1     -   atatgtatattcgcttatttcatttatgattgattgatatggaggatttgttttggtccacaactcatatatttatccttgaatcgtgattatgacacag  19305000                       --------->TOE2(3)                       <---------MYB59                    <-----------GT1                 -------->ATHB1                                                   <---------DAG2                 --------->ATHB51                                                 <----------DOF2                 <---------ICU4                                                  <---------ANAC58                --------->AHL20(2)                                               <---------ANAC46                <---------AHL20(2)                                               <---------ANAC58                --------->ICU4                                               <---------At4g35610       <---------------AtSPL8                                             <---------At5g28300       <---------ICU4  --------->TOE1(3)                                 <-----------GT1           --       --------------->AtSPL8         --------->ETT(2)              <---------AHL20(2)  <---------AHL20(2) ---------->GT1 <---------ATHB51  <---------AtMYB61<-----------GT1 --------->AHL20(2)   --------->AHL20(2)   tatggagaattagtacaaattattaccttacaaactttggtcgacttcaaatgttacatttcagatttataaaatttacagttgcttttttttaatacaa  19305100                                             <---------HSFB2a(2)       --------->YAB1                                             --------->HSFB2a(2)   <-------TEIL                                       <-------MYC2            --------->AHL20(2)               -----                                       ------->MYC2         --------->YAB1                      -----                                       <-------MYC3        <---------YAB1                       -----     <---------AHL20(2)                ------->MYC3      --------->YAB1<---------ICU4           -----    <---------ARR11(3)                --------->ANAC58  <---------AHL20(2)                    <------    <---------AHL20(1)                --------->ANAC58 --------->AHL20(1)                     -------    --------->ARR11(3)               <---------TOE2(2) <---------AHL20(1)                    <-------   <---------CCA1(2)                 <---------TOE1(2) --------->AHL20(2)                    --------  ------->TEIL                 --------->ARR14(2)   --------->AHL20(2)<---------YAB1<---------ZAT14 --------->GT1                 <---------ARR14(2) --------->AHL20(2)--------->YAB1  --------->ZAT14   aacgtatatatttgtttgtatatgtgaaatgagttttcgcacgttttatagaaaaaatataatcataaattcataataacatagactatactatatatac  19305200  ---------->DOF2 ---->ANAC55(2) ---->ANAC58 ---->ANAC58 ---->ANAC46                                             --------->AHL20(1)           --------->ARR11(3) -----GT1                           <---------ARR11(3)   --------->ARR11(3)           <---------ARR11(3) -->CCA1(2)                         --------->ARR11(3)   <---------AHL20(1)     --------->ANAC58 --ARR14(2)                        <---------CCA1(2)    --------->YAB1          --------->ANAC58 ->ARR14(2)<---------ZAT6      ----------->GT1--------->AHL20(2)           ---------->DOF2   gcgataaagagtagtataagtattcatgttaatgtgtaaatctttcattttaaaacaaaaatattgatggaataaatgaaagaagcaagataatgtatgg  19305300                                                               --------->At4g35610                                                              <---------ALFIN1            ---------->DOF2                  ------>MYB83  <---------ALFIN1        --------->HSFB2a(2)        <----------ID1                       ------>MYB46(1)  --------->DEAR3(1)   <---------HSFB2a(2)      ---------->DOF2                  ----------->HVH21--------->ANAC46        <----------DOF2------    <---------ZAT6                     <---------YAB1--------->ZAT14    <-----------GT1 ---------->DOF2   gcgatagtgaaagacaaagaaatagagagagagacattcttatgaccgacttctctactctccaccgctccatttttctctgctttcggaaaaagaatag  19305400  Previous    Next  AGI:  At2g46970.1    Description:  PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor. similar to PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) [Arabidopsis thaliana] (TAIR:AT3G62090.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO17337.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 19302559    to: 19304895    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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