Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->At4g35610                                <---------At4g35610                    <---------DAG2       <--------                             <---------MYB52(1)             <---------TOE2(3)               ---------                        <---------AtLEC2       <---------ZAT14  --------->CCA1(2)  <----------ID1                      --------->AtLEC2--------->TOE2(3)    --------->MYB52(1)   ---------->DOF2 ------>ID1       <-----------HVH21  --------->At4g35610   <-----------GT1 <---------YAB1   ---------   tccccatttagtcttctacccttcatgcatggttagcttagcttaatgctgaactgttgaataacgatatgggccttatgctaaaagaacaaaaccttat  19252300                                                                                   --------->MYB46(3)                                                                                  ------->TEIL                                                                                <---------ZAT14                                                                                --------->ZAT14                                                                                --------->ZAT18                                                                             <---------ANAC46                                                                           --------->ZAT14                                                                           --------->REM1(2)                                                                          --------->ALFIN1                                                                         ------->MYC3                                                                         ------->MYC2                                                                         <-------MYC2                                                                         <-------MYC3                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                      <---------ANAC58          <----                                                           --------->ALFIN1<---------ZAT14      <---- -DAG2 --------->AHL20(2)                         <-------TEIL        <---------ANAC46      --------- >TOE1(3)                                     --------->MYB59         <---------ANAC58  --------->ANAC58 >TOE2(3)            --------->AHL20(2)    <XXXXXXXXXXXXXXXXXXXXXMIR840 <---------ANAC58--------->ANAC58   gggtctaaaaaaaataagcccaatataaaactatggcccaaataagtttaggtccattagagtgtgagaatagcgcgtgtagtgaaccgcacgagaatgc  19252400                                            <---------TOE2(3)                                          <---------ATHB12                                        <---------At4g35610                                      <---------WRKY12                --------->ETT(2)                                      --------->ZAT14                 <---------ETT(2)                                      --------->ZAT18               --------->REM1(2)                                      <---------WRKY38(1)          --------->ALFIN1                                      <---------ZAT14             ------->MYC4                                     --------->TCP16(2)           <-------MYC3                                    <---------TCP20               <-------MYC4                                    --------->ARR14(2)            ------->MYC2                                    <---------ARR14(2)            <-------MYC2                                    <---------TCP11(2)            ------->MYC3                    ---                                    <---------TCP16(1)            -------->ABF1                 <----                                    --------->PCF2               <---------ANAC55(2)            -----          <------MYB46(1)           <---------PCF5               <---------O2                  ------          <---------MYB46(3)      --------->LBD16                --------->TGA1a             <-------      <---------MYB46(3)         --------->LBD16                 <---------TGA1a            <--------      <-----------RAV1(1)       <---------LBD16                  --------->O2     <---------MYB46(3) -----ANAC58                 <---------GLK1(1)                   <--------ABF1   --------->ALFIN1<--- -----ANAC58                --------->ARR14(2)                   ==================================== ->DOF2   <------MYB83      <---------GLK1(2)                    --------->ANAC55(2)        ---------   gcgttcgattgttggtgaagtagtcgtctagattcccgggtccactgatgtttctagtgtatcagacacgtgtcgacaaactggtgggagagattaacga  19252500                                                                    --------->GLK1(1)                                                                   <---------ARR14(2)                                                                 --------->LBD16                                                                --------->ANAC58        --------->PCF2                                          --------->ANAC46      <------MYB46(1)         <-----------GT1                   <---------HSFB2a(2)      <------MYB83          <---------AHL20(2)                  --------->HSFB2a(2)     --------->MYB59       --------->YAB1                       --------->LBD16     --------->MYB111(1)<---------RVE1(1)                       <---------ANAC55(2) --->ZmHOX2a(2)         <---------CCA1(1)                       --------->ANAC58 -----ARR11(3)         --------->ARR11(3)           <-----------HVH21 ---->ARR11(3)         <---------ARR11(3)          <----------DOF2 --------->ARR14(2) ->GAMYB<---------TCP15(1)<---------YAB1        <-----------------AGL1 <---------O2 --TOE2(3)             --------->AHL20(1)      <-----------GT1  --------->ANAC55(2) ---GT1<---------PCF2  <---------AHL20(1)     <-----------GT1  <---------LBD16 ---ZmHOX2a(2)    <------ZmHOX2a(2)       <----------DOF2<---------MYB52(1) ==MYC_MYB       --------->ARR11(3)      <---------DAG2<---------TOE2(3)              ---------->DOF2 >MYB52(1)       <---------ARR11(3)   <-----------GT1 <-----------RAV1(2)   <---------ANAC46   tcttaagtaggtcccactagatcaagatattataacgaattgacctttttaacctttcaggtagtcccggaactcgtggcctagaatacaaagaaggttg  19252600                                                             --------->MYB46(3)                                                    <---------CCA1(2)                                        ---------->DOF2     <---------At4g35610              <---------YAB1  ------->TEIL        --------->YAB1        <---------TOE2(3)  ----------->GT1 --------->At4g35610                            <----------DOF2   tgaacaagttgatgttaagatggacaagaatgtaacttgaacaaaagctgaatcatctcttcagccactagtatgttgacatatggcagtttcttttgta  19252700                                         *TSS                         --------->HSFC1(2)               <---------AHL20(2)       -------->HAHB4                <---------HSFC1(2)               --------->AHL20(2)       --------->YAB1             --------->LBD16           <---------AHL20(2)          <---------YAB1             <---------ANAC58           --------->AHL20(2)       <---------YAB1                --------->ANAC55(2)           <---------AHL20(1)      --------->ARR11(3)          <---------ARR14(2)           --------->AHL20(1)      <---------ARR11(3)          --------->ARR14(2)          <---------AHL20(2)      --------->YAB1         <-----------GT1          --------->AHL20(2)    <---------TOE2(3)     <---------GLK1(1)<---------ANAC58         <----       --------->AHL20(2)      ---------->DOF2        --------->GLK1(1)<---------ANAC58       -------      <---------AHL20(2)  <---------TOE2(3)     <---------ANAC46  <---------ANAC58     <----------DOF2      --------->AHL20(2)  <---------TOE1(3)   <---------MYB46(3) <---------LBD16  <----------DOF2   gcctcgaaataaataaattaaaaagtttgaggttaaagataattatagtggctgagatttctccatttccgtagcttctggtctcttttctttgtttcat  19252800                                                                         --------->AHL20(2)                                                                  <---------LBD16                                                                <---------ARR14(2)                                                                --------->GLK1(2)                                                                --------->ARR14(2)                                                               <---------GLK1(1)            <-----------GT1                                  ------->GAMYB                          -     --------->ANAC58            --------->HSFB2a(2)        --------->ANAC58                        <     --------->ANAC58    <<<<<<<<<TBF1  <---------ANAC58    --------->ANAC58                  -------   ---------->DOF2    <<<<<<<<<TBF1     <---------ANAC58  --------->MYB52(1)                  <------ -----WOX13(1)     <<<<<<<<<TBF1 <---------HSFB2a(2)    --------->MYB46(3)            <----------DOF2 -->ATHB12 <---------ATHB12 <<<<<<<<<TBF1 <-----------GT1--------->TOE1(2)        <---------GLK1(2) <   tgatcaaaagcaaatcacttcttcttcttcttcttctcgatttcttactgttttcttatccaacgaaatctggaattaaaaatggaatctttatcgaatc  19252900                                                     <---------AHL20(2)          ---------->ID1                             --------->AHL20(2) -------->ZAT2                               <---------TOE2(3)  <---------ARR11(3) ---------ZAT2             --------->At4g35610  <---------WOX13(1)                                 <- -->ARR14(2)     --------->ATHB12            <---------YAB1<---------YAB1              <-----------GT1 ---ARR14(2)  <----------DOF2     ---------->DOF2 --------->ATHB12 <----------DOF2<---------YAB1 ---- ---------At4g35610      --------->YAB1 <-------TEIL<---------WOX13(1) <---------YAB1  --------->ARR11(3)   caagctgattttgtttctttcattgaatcatctctctaaaggtacttaagattgatttattgtcatggtctttcttattgtttgatgaataacttgactt  19253000                                                      <---------ZAT14                                                      --------->ZAT14                              --                                                      --------->REM1(2)                          ----                                            =======================HOX2a_HOX2a                  <----                                            ------>ZmHOX2a(2)                                   -----                                           --------->CCA1(2)                                    -----                                           ========================HOX2a_HOX2a                 <-----                                           <------ZmHOX2a(2)                                   ------                                          <---------ARR11(3)                                   <-----                                          --------->ARR14(2)                                   ------                                          <---------ARR14(2)                                   ------                                          --------->ARR11(3)                                   <-----                                          --------->ARR14(3)                                   <-----                                          --------->GLK1(2)                                    ------                                          <---------AGP1            <---------ZAT6     --------->HSFB2a(2)            <---------ANAC46              <---------ARR14(3)  --------->At4g35610      <---------HSFB2a(2) --------WOX13(1)                       ----------->ARR10   <------ZmHOX2a(1)     <-------TEIL ------ ----->ATHB12                    ---------->DOF2     <---------ANAC46     <----------ID1     --------   gattgttttttgttttgtggattagtggaattttgtaaagagaagatctgaagttgtgtagaggagcttagtgatggagacaaattcgtctggagaagat  19253100        ----------->GT1       <---------TOE2(3)       <---------TOE1(3)    <---------YAB1 --------->GT1 -->ZmHOX2a(2) --ZmHOX2a(2) ---->CCA1(2) ---->ARR14(1) ----ARR14(2) --->ARR14(2) ----ARR11(3) --->ARR11(3) --->ARR14(3)                                    <---------ANAC58 ----AGP1                                        <---------ANAC58       <---------TOE2(3)      ------ ----ARR14(3)                            <---------WOX13(1)          <---------AHL20(2)        ------ --->GLK1(2)                           --------->ATHB12             --------->YAB1         --------->ANAC58 --->AGP1      --------->AHL20(2)     <---------YAB1<-----------HVH21--------->AHL20(2)    --------->ANAC58 --->ARR10     <---------AHL20(2)   <---------At4g35610   --------->ATHB12  ------->TEIL  <---------LBD16   ctggttattaaggtaaattaaactaaattttagggggaagatgattgttttaggtgtcaaagattgagaattttaatgaaacttgatatagactcggaag  19253200  Previous    Next  AGI:  At2g46820.1    Description:  PSAP/PSI-P/PTAC8/TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA); DNA binding. Identical to Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor (TMP14) [Arabidopsis Thaliana] (GB:Q8LCA1;GB:O81038); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52220.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96589.1) Range:  from: 19250658    to: 19252210    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g46830.1    Description:  CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); transcription factor. similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G01060.1); similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G01060.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24338.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro: Range:  from: 19252741    to: 19255978    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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