Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->AHL20(2)                                                    --------->DAG2 --------->AHL20(2)                                          <---------ZAT14        <---------AHL20(2)            ------                                          --------->ZAT14     <---------AHL20(2)             --------                                          --------->ZAT18     --------->AHL20(1)        <---------AHL20(2)                                          <---------ZAT18     --------->AHL20(2)        --------->AHL20(1)                                    <---------ANAC55(2)      <---------AHL20(2)    --------->AHL20(2)          ----------->RAV1(1)       --------->ANAC55(2)----------->GT1             <---------AHL20(2) ------->DOF2                      <---------------AtSPL3    --------->AHL20(2)    --------->AHL20(1) ----->RAV1(1)                     --------->MYB59 ---------->DOF2<---------AHL20(2)    --------->AHL20(2)   caaagtcaagacccacaaaaacatttttgttttgggttatgtactgcacaaaaaaaagtgtaaataatttaaaataaacccaaaataaaataaaatagag  19236000                                                              <---------ANAC58                                                              <---------ANAC46                                                              <---------ANAC58                                                             --------->ATHB12                                                            <---------YAB1                                     <---------GLK1(2)     <---------TOE2(3)          <------MYB83             --------->KAN4(2)     --------->AHL20(2)   <---------YAB1                <------MYB46(1)            --------->KAN4(1)      <---------AHL20(2)<---------AHL20(2)              --------->MYB59      <---------At4g35610 <---------ANAC55(2)        <---------YAB1           <---------WRKY45      --------->At4g35610 --------->ANAC55(2)  <---------MYB52(1)             <---------WRKY12 <----- ----->GT1  <---------KAN4(1)   <---------AHL20(2)  <---------AHL20(2)        <---------WRKY38(1)   - --->GT1  <---------GLK1(2)     --------->AHL20(2)<---------YAB1             --------->WRKY18(1)   <-   aaaaattcagcagattattctcttcgatatgtattaaaaaattctcacagttatttttattaatgcttggagacgaatggtcaaagtttggttttatttt  19236100          ---------->DOF2        <---------YAB1      <---------ICU4      -------->HAHB4      --------->YAB1     --------->ICU4 --------->YAB1                                                                  -   --------->YAB1   <---------ICU4                                                         --------->ANAC58  <---------YAB1   --------->ICU4                                 --------->ANAC58         --------->ANAC58 ----AHL20(2)   <---------AHL20(2)                                --------->ANAC58       --------->CCA1(2) -------->YAB1  --------->AHL20(2)      <---------ATHB12      --------->At4g35610 --------->ANAC46  < --------YAB1----------->GT1          --------->GLK1(1)       <---------At4g35610--------->ZAT18   --   tttgataataatgaaagtttaattatcaagaattttgcagaaatcaagagagaaggttgaagacagcgaagcaaatgtttatgtacacaagagacgcata  19236200                                        <---------DAG2                                              -                              <---------ANAC58                                                    <--                    ----------->GT1     <----------DOF2                                          <---         ---------->DOF2      <---------ANAC58                                                  <----    --------->AHL20(2)       --------->MYB59  ------>ZmHOX2a(1)                              <------- -------->AHL20(1) --------->DAG2      <---------ANAC58                                      <------- ---------AHL20(1)--------->DAG2       <---------ANAC58      <---------ANAC58                <------- ------->AHL20(2)---------->DOF2<---------GLK1(1)            <---------ANAC58           <------------CBF   aatatataaaatacagcgaaaaaggtaaaattgggtctctggcttttcctcatattttcaattgcttctctcttctctcttctatagccccattgtcgtg  19236300                                                                                                   --                                                                                                   <-                                                                                                   <-   --------->ZAT6                                                                                <--- -------->PCF2      ---------->ID1                                                             <----- -------PCF2    <---------ANAC58                                                           <--------- ------DEAR3(2) <---------ANAC58                                                         ============ -----TOE1(2)<----------DOF2                                                             ------------ --ANAC58  --------->At4g35610          --------->TOE2(3)                                <----------- --ANAC46  <---------At4g35610     <----------DOF2                <-----------GT1     <-----------GT1 --ANAC58  --------->ZAT2 ------>ZmHOX2a(1)                    *TSS         ------>ZmHOX2a(1)  ------   ggttcccactagcagctttcttgtcttcctccattttcttttccttcattctactaaaacagaggtttttgcctcttcctctcttgtttcactctttagg  19236400  --------->ANAC58  --------->ANAC46  --------->ANAC58 ------->ZAT14 --------ZAT14                                                                               <------- ------TEIL                                                                                  <------- ------ZAT18                                                                             <---------ANAC58 ----------AtSPL8                              <---------At5g28300                       <-------GAMYB -DOF2                   --------------->AGL15<-----------GT1                    <---------MYB52(1) ========================================MADS_MADS                             <---------ANAC58     - --->AGL15     <----------DOF2            --------->DAG2   ------>ZmHOX2a(1)   <---------ANAC58   <-- ----AGL15<-----------GT1<----------DOF2 ---------->DOF2   ==================HOX2a_HOX2a <---------ANAC58 --------->AtSPL8  <-----------GT1 --------->ALFIN1    <-----------GT1<------ZmHOX2a(2) <---------MYB46(3)   gtacacacaaattcactcttttttcttctttgtttgggaggggaaaagttacagttttttcctctgttttggatcaaaatttcgtttttttggttgtgtt  19236500     ----------->RAV1(1)     --------->MYB52(1)  --------->ANAC58                                                       --------->WOX13(1)  --------->ANAC58                                            <---------LBD16 --------->LBD16 --ZAT6 ------->GAMYB                                 <---------ANAC46--------->ANAC58 --ANAC46                                             ----------->GT1 --------->ANAC58 --------->DOF2                                 <---------TOE2(3)    --------->DAG2         ------->GAMYB -------TOE2(3)        --------->ATHB12         <---------TOE1(3)   ---------->DOF2      ----------->RAV1(1)   aagaaagcaacagagagagagagaaagattgaaactttggatgtgaatttagggttttgtgaattggggaaaaagcaatccagagatggctcaacagaga  19236600                       <---------YAB1                     --------->YAB1                     <---------ICU4                    <---------YAB1                    --------->ICU4               ----------->GT1                     --------->ARR11(3)              --------->ALFIN1                     <---------ARR11(3)            <------MYB46(1)       <---------ARR14(2)    <-----------RAV1(1)                        --            <------MYB83          --------->ARR14(2)  <----------DOF2                              <-           <---------AtMYB61 ----------->RAV1(1)   <-----------ARR10  <---------ANAC58             --     --------->At4g35610--------->YAB1             --------->GLK1(2)  <---------ANAC58    <-------TEIL     <---------At4g35610-------->HAHB4     --------->WRKY12     <------ZmHOX2a(1)        --------->CCA1(2)   caatttcagatggaaggtggtaataataatacaacagataccaagttgacgaaaatctttgttggaggattagcttgggagactcagagagatacaatga  19236700                                                                          --------->CCA1(2)                                                                         --------->ARR14(2)                                                                    ---------->DOF2                                                                  =============HOX2a_HOX2a                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                 ==============HOX2a_HOX2a                                                                 --------->CCA1(2)                                                                --------->ARR11(3)                 <---------ANAC46                               <---------ARR14(2)                 <------MYB83                                   <---------AGP1                 ----------->GT1                      --------->ZAT14    --------->ARR11(3)                 <------MYB46(1)               --------->YAB1   --------->AGP1     <----------DOF2                      --------->ICU4        <-----------ARR10 <---------MYB52(1)          ---------->DOF2  <---------ZAT6    <---------ARR11(3) ------->O2     --------->MYB46(2)        <---------YAB1        --------->ARR14(2)   --------------->AtSPL8 --------O2     --------->MYB111(2)    <---------YAB1 <---------ZAT14   <------ZmHOX2a(1) --------->GT1<---------MYB52(1)<---------At4g35610  <<<<<<<<<<<<<<<<<LFY<---------ARR14(2)   gacgttactttgaacagtttggtgaaatcgttgaagctgttgtcattactgataagaacactggaagatctaaaggatatggatttgtatgttccttctt  19236800                                                                             <---------ANAC55(2)                                                                             <---------ANAC46                       --------->YAB1                                    <-----------HVH21    <------                    --------->YAB1                                      <------MYB83    --------->ZAT2                 <----------DOF2                                        <------MYB46(1) --------->At4g35610             <---------MYB52(1)                                        --------->MYB59  <---------At4g35610           <---------ANAC58                                        --------->ATHB12     <---------ZAT2           <---------ANAC58--------->DAG2                         <---------AHL20(2) <------ZmHOX2a(1)          ---------->ID1  ---------->DOF2                     <---------AHL20(2)   <---------TOE2(3)      <----------DOF2 <---------YAB1<----------DOF2          <---------AHL20(2)    <---------TOE1(3)   ctctctctctttttcgtttctttgatgataaagtttctctttttctctgaaaaaatcagtttttttatttgattaggtcacgtttaaggaagctgaagca  19236900  Previous    Next  AGI:  At2g46780.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to unknown [Populus trichocarpa] (GB:ABK93394.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19236363    to: 19238574    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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