AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                                     --------->ANAC58
                                                                             <---------------AtSPL8
                                                  ------>MYB83          --------->WOX13(1)
                                                  ------>MYB46(1)      <-------TEIL  --------->ANAC58
       <----------ID1------>MYB83               <---------MYB59       <------ZmHOX2a(2)         ----
   --------->CCA1(2) ------>MYB46(1)            --------->AtMYB61    <---------ARR11(3)    ---------
----->YAB1 ---------->DOF2              ------>MYB83                 --------->ARR11(3)  ---------->DOF2
----DOF2<------ZmHOX2a(1)               ------>MYB46(1)              --------->AGP1---------->DOF2
 
catgagatttaggacaaagaaaccaaacacatcaaatcgaaccaaatgaaaccaaacccatataagtttatagatccatcagagtacaaagcaaaagaaa  18817700
                    <------ZmHOX2a(2)                               --------->HSFB2a(1)
                   <---------ARR11(3)                               <---------HSFB2a(1)
                   --------->ARR11(3)                            <------ZmHOX2a(1)
                   --------->AGP1                             <------ZmHOX2a(1)
         ----------->TGA1                                  <---------LBD16       --------->DAG2
       <---------ICU4                                      <-----------RAV1(2)  ---------->DOF2
       --------->YAB1------>ZmHOX2a(2)                   -------->P <---------HSFC1(2)
     <---------ARR11(3)        ----------->GT1          --------->MYB52(1)   <------ZmHOX2a(1)
     --------->ARR11(3)    --------->ATHB12             ------>MYB46(1)   <---------HSFB2a(2)
 ---------->DOF2  --------->GLK1(1)                     ------>MYB83--------->HSFC1(2)
------>DOF2       <---------GLK1(1) ---------->DOF2   --------->AtMYB61   --------->HSFB2a(2)
-->GT1<------ZmHOX2a(2)<-----------GT1                <---------MYB59 <----------DOF2        -------
 
aaagaaaagatcatgacgaagagatcttaccgattggctaaaagggtttgataaaaacctaaccaggaggaagctttcgaggataaagggtttgtgtatg  18817800
                <------ZmHOX2a(1)
             <------ZmHOX2a(1)
        --------->CCA1(2)
       <---------ARR11(3)                             ---------->DOF2              <---------GLK1(2)
       --------->ARR11(3)    --------->YAB1       ---------->DOF2           ---------->DOF2
>TEIL<---------ZAT6          <---------ICU4    >>>>>>>>>TBF1              <---------YAB1     -------
 
tataggtagagatataggaggagactatataagcattactggagggagaagaagaaagaaagagaaggaagaagatgatcaaagttgattctctgcgaaa  18817900
           <---------HSFB2a(2)
           --------->HSFB2a(2)
     --------------->AGL15
     <----------DOF2                                               <----------ID1
     <---------------AGL15                                     ---------->DOF2
    <---------DAG2                                            <---------AHL20(2)
    <-----------------AGL3       <----------DOF2      <---------ANAC58
  ------->TEIL                  <---------ANAC58      <---------ANAC58                            <-
 <---------ARR14(2)   ---------->DOF2 ------>ZmHOX2a(1)       --------->AHL20(2)                  <-
--->DOF2   <---------TOE2(3)    <---------ANAC58      <---------ANAC46  ---------->DOF2     <-------
 
ggaagaacctttttatggaagtagcaaaagaagtagctttcctcgtttcatctatttgtgtgtaataaaagaaacaaaagacaaaaaaacttcacacact  18818000
                                   ------>ZmHOX2a(1)
                                 ------>ZmHOX2a(2)
                                <------ZmHOX2a(2)
                               <---------GLK1(2)
                               --------->ARR14(3)
                               <---------ARR14(3)
                               <---------ARR11(3)
                               --------->ARR11(3)
                               <---------ARR14(2)
                           ---------->DOF2                                                     <----
                      ------>ZmHOX2a(1)                                                        <----
                      ==================HOX2a_HOX2a                                            -----
                      =================HOX2a_HOX2a                                    <----------DOF2
                     --------->TOE1(3)               --------->YAB1                <---------AHL20(2)
              <----------DOF2  --------->ARR14(2)   <---------YAB1                 <-----------GT1
-----------------------ANAC81 --------->RVE1(1)     <---------TOE2(3)          <---------AHL20(2)
--------CCA1(2)      --------->TOE2(3)              <---------TOE1(3)         <---------AHL20(1)
--ALFIN1      <---------DAG2 ----------->ARR10   --------->ICU4               --------->AHL20(1)
 
cgtctcttctctctctgcttttctccttaaaaaagatcctcttctcgttgtagttatggtaatggtgtttgtgaaaccatatatattttcttttctattt  18818100
            --------->ARR11(3)                                               <---------WOX13(1)
            <---------ARR11(3)                                            <---------YAB1
           --------->YAB1                                              --------->ICU4
          ----------->GT1                                              --------->ARR14(2)
 <---------ANAC58              ---------->DOF2                    <---------ANAC46                 <
 <---------ANAC58   *TSS   ---------->DOF2            --------->WOX13(1)--------->YAB1            <-
 <---------ANAC46--------->AHL20(1)        --------->At4g35610    --------->ETT(1)                --
-----AHL20(1)    <---------AHL20(1)        ----------->GT1     <-----------RAV1(1)               ---
-----AHL20(2)    --------->AHL20(2)      <------ZmHOX2a(1)     --------->ALFIN1         <-----------GT1
---->AHL20(2)    <---------AHL20(2)    --------->ALFIN1  --------->YAB1<---------ARR14(2)  ---------
 
tatttcttggagaaagataataaaataagagaaagaaagagggaggagctaaatagtcagtcatatgtgtcgcaaatatgatggacgcttgaaacctcat  18818200
   --------------->AGL15
   <---------------AGL15
  <-----------------AGL1
  <-----------------AGL2            --------->YAB1
  --------->ANAC55(2)           --------------->AGL15
  ==============================================MADS_MADS
  <-----------------AGL3        <---------------AGL15                                            <--
  <-----------------AG         ----------------->AGL3                                           ----
---------MYB52(1)              ----------------->AGL2                              <-----------GT1
---------DOF2             ---------->DOF2           <-------TEIL               <----------DOF2  ----
---->ZmHOX2a(1)     --------->TOE1(3)           <---------YAB1          <-------TEIL     -----------
------>TOE2(3)      --------->TOE2(3)       <---------ARR14(2)     <-----------GT1<-----------GT1---
>TOE2(3)       ---------->DOF2 =====================================================================
 
cctttacttattttggaaaaaagccttaagaaagaccaaaaatagcatattttgatacatatggacatttttacatacacatctttttccctcccataaa  18818300
                                    --------->AHL20(2)
                                    <---------AHL20(2)
                               <---------YAB1
                               <---------AHL20(2)
                            <---------YAB1
                          <---------AHL20(2)
      <---------AtLEC2    --------->AHL20(2)
     <---------MYB46(3)  <---------AHL20(2)
-------ARR11(3)          <---------AHL20(1)
----->RVE1(1)            --------->AHL20(2)                          <---------AHL20(2)
----->CCA1(1)      <-----------HVH21<---------AHL20(1)   <----------DOF2
------>AGL3 <---------GLK1(1) <---------AHL20(2)      --------->GLK1(2)<---------TOE2(3)
------>ARR11(3) <---------ANAC58   --------->AHL20(2) --------->ARR11(3)                           -
=======MADS_MADS<---------ANAC58   <---------AHL20(2) <---------ARR11(3)                       -----
 
tatctagttggatggaaatgcctgtcaaattatttttattaaatttcttctaacaaaaatctttttttgtttttaatgtggacacaaacactctctcgta  18818400
                                                                                                <---
                                                                                                <---
                                                                                                ----
                                                                                                <---
                                                    --------->TOE2(2)                          -----
                                                  -------->P                                   -----
              <---------YAB1                   <---------ANAC58                              -------
        <---------ALFIN1                       <---------ANAC58                             <-------
      ------>NtERF2                      <---------MYB52(1)                               --------->YAB1
     --------->PCF2                  --------->ARR11(3)                                  <---------YAB1
-------->ARR14(2)<---------WOX13(1)  <---------ARR11(3)                                 --------->AHL20(2)
-->TEIL<------NtERF2           --------->YAB1<-----------GT1                      <---------ATHB12 <
 
cctatatgcccccacttgtaattgatatgaaaaataagaatatcgttttttcttacctgtgagtaatacaactatattggttttaatcaatttttataat  18818500
------AHL20(1)
--------ARR10
----->ARR11(3)
------ARR11(3)        --------->ATHB12            <---------ANAC58
---->CCA1(1)         <-------TEIL                 <---------ANAC58
---->RVE1(1)     <---------AHL20(2)           <---------ANAC58       <-----------RAV1(1)
-->YAB1  --------->MYB52(1)                   <---------ANAC58      <---------YAB1
--YAB1   ----------->RAV1(1)                <---------YAB1       <---------YAB1
----------DOF2  --------->AHL20(2)     <-----------GT1>>>>>>>>>>>>>>>>>LFY     <---------AHL20(2)
 
atctttccatcccaacagataaaattcatttgatttgtatattttctatgcttgtttgtccattgtttcttattgttgttcttaaattgtgtttttagtt  18818600
<- Previous    Next ->

AGI:  At2g45660.1   
Description:  AGL20 (AGAMOUS-LIKE 20); transcription factor. Identical to MADS-box protein SOC1 (SOC1) [Arabidopsis Thaliana] (GB:O64645); similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.3); similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.2); similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.1); similar to MADS-box protein [Cardamine flexuosa] (GB:AAP20424.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:  from: 18814612    to: 18818121    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version