Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              <------MYB83                                                                                             <-------                                                                                         <---------HSFB2a(2)                                                                                        <---------LBD16                                                                                      --------->GLK1(2)                                                                                     --------->ARR14(2)                                                                                     <---------GLK1(2)                                                            --------->LBD16    <---------ARR14(2)                                                       <---------At4g35610     --------->ARR11(3)                                               <---------ANAC46                --------->ARR14(2)                                               <---------ANAC58               --------->KAN4(1)                                               <---------ANAC58  <---------KAN4(2)   <---------ARR14(2)                                          <----------DOF2  <---------ANAC46   --------->GLK1(1)  ----       <-------TEIL                     <---------ANAC46  <---------LBD16    ---------->TaMYB80  ---- -----ARR14(2)  <---------LBD16       <---------ZAT18  --------->At4g35610   <---------KAN4(2)<------MYB46(1) ---->ARR14(2)<---------AGP1    <<<<<<<<<<<<<<<<<LFY  <----------DOF2 <-----------RAV1(2)--------->HSFB2a(2)   tccacaagatgcagtagctctggagaaacatttggaacagtggcctttggcttgggcttctgcggggaatgaacaggggaatatccagattctggatggt  18778900                                               ------>NtERF2    --------->GLK1(2)             <---------AtLEC2    <---------ARR14(2)            <---------ANAC46    --------->ARR14(2)        --------->At4g35610                                   <----------DOF2   <---------GLK1(2)          <---------ZAT2<---------At4g35610                <-----------HVH21 ---MYB46(3)                  <---------At4g35610                             <------MYB83 --AtMYB61           ---------->DOF2        --------->ZAT2    <-------TEIL    <---------DEAR3(2) ----->ZAT18      <---------HSFB2a(2)       --------->At4g35610         ---------->DOF2 ----->ETT(2)     --------->HSFB2a(2)   <---------KAN4(2) <---------TOE1(2)   <------MYB46(1)   ggacagaatccagactagtttcagaaagggactgctgcatggaataagctgcctctctctcaggtccagggctagaaagtcggtcactttgcacatcgtc  18779000                                                                           ------>MYB46(1)                                                                           ------>MYB83--------->GLK1(2)                                          --------->ANAC58        <---------ATHB12    <---------GLK1(2)                                          --------->ANAC55(2)   ------>MYB83  <---------TOE1(2)                                    <---------WOX13(1)          ------>MYB46(1)<---------ATHB12                                  --------->ATHB12    <---------ANAC58 <---------ARR11(3)                              --------->LBD16         <---------ANAC58 --------->ARR14(3)                      ------>ZmHOX2a(1)   ----------->GT1     --------->AtMYB61--------->ICU4                    ----------->RAV1(2)   <---------ANAC55(2) --------->MYB46(3)   --------->YAB1          ===================HOX2a_HOX2a  --------->ANAC58    <---------MYB55(2)--------->YAB1          <------ZmHOX2a(2)  <---------ANAC46       --------->ZAT14    --------->ARR11(3)       <----         <---------ARR11(3)  --------->LBD16        <---------ZAT14    <---------ARR14(3)       -----         --------->ARR11(3) <---------LBD16  <-----------GT1------>NtERF2--------->AtMYB61   --------   cataggcatgagatcatacatctcctgagtcccggataattgataagtaactacttcagtgccaccaaatgaagacctcccatgatcagaatttgaaaag  18779100                                                                                                -----                                                                                   ---------->DOF2                                                                                 ====================                                                <---------GLK1(1)                ------>ZmHOX2a(1)     <---------ARR14(2)                         --------->GLK1(1)               --------->TOE2(3)     --------->ARR14(2)                        <---------ARR11(3)               --------->TOE1(3)  --------->LBD16                            ------>ZmHOX2a(1)                <---------YAB1    -----  <---------TOE1(2)  --------->LBD16------>NtERF2------>ZmHOX2a(2)         <---------YAB1       ----- -----HSFC1(2)     ----------->RAV1(2)<---------DAG2 --------->HSFB2a(2) <---------ICU4         <---- ---->HSFC1(2)<-----------HVH21    --------->DEAR3(1)<---------HSFB2a(2) --------->YAB1         <---- -->DOF2 ------>ZmHOX2a(1) <-------TEIL<----------DOF2--------->LBD16  <---------ARR11(3)   <--------   cttccaggttcctgaaggtcaccctgagattcattcgcagccttttcctgatctcccagagaaacttgttcaaaatcatcatccttaaaggctctatcag  18779200                                                                                 <----------DOF2       ------>ZmHOX2a(2)                                                     <----------DOF2 ---->At4g35610                                                            <---------At4g35610 =============HOX2a_HOX2a                                                  --------->At4g35610 ------>RAV1(2)                                                    <----------DOF2 ---->ZAT2                                                         <-----------HVH21   <---------ICU4 -----At4g35610                                                  <---------At4g35610  <---------YAB1 -----ZAT2                                         <------ZmHOX2a(1) <-----------RAV1(2) ---HVH21     ---------->DOF2          ------>ZmHOX2a(1)         --------->At4g35610--------->YAB1   ctgaactgatcccttgcaaagtcgtatcaaatgcctctatcctattgtgcaaaggattagctatatcagcttcagggagctttctttcatcatcgtcttc  18779300                                                      <-----------HVH21                      <-------                                                   ----------->RAV1(2)                       --------                              <---------At5g28300<---------ALFIN1                            --------                    <---------ZAT14           --------->ANAC46                --------->At4g35610                    --------->ZAT14  --------->ARR14(2)                    <---------At4g35610                  <---------ZAT14    <---------ARR14(2)             --------->DAG2          ------->TEIL                <---------------AtSPL8       --------->MYB46(3)    ---------->DOF2        <-------TEIL                <---------------AtSPL3    <-----------GT1   --------->ANAC46 --------->GLK1(2) ------   cattctataaacttatggagagtacagacattcacagcgttttctcaccctccacctgttacacagagcaaaagttgagcttctgagaaaaatgcatctg  18779400                                  <---------WOX13(1)                           <-----------TBP                                --------->ATHB12                            ------>ZmHOX2a(2)     ---                               <---------YAB1                       --------->MYB46(3)          <----                              --------->At5g28300             <---------At4g35610               <----                           <XXXXXXXXXXXXXXXXXXXXMIR869.1      ----------->RAV1(2)----------->TBP<---- --At4g35610             <---------REM1(2)                    --------->At4g35610--------->AHL20(2) ->At4g35610           <---------ETT(2)   ------>MYB83       ------->TEIL--------->YAB1         ----- --->RAV1(2)           --------->ETT(2)   ------>MYB46(1)  <-------TEIL <---------ATHB12        ----- ----->HVH21      ---------->DOF2<------------CBF--------->TOE1(2)  ------------>CBF           <-----   acactgatgaagatgagaactaaagtcgacactgtgattgaaccaaataaacctgcaaaaatgcatctgaaccaatgatccatatatatactcacttgga  18779500                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                        =============                                                                                        <---------GLK1(1)                                                                                        --------->GLK1(1)                                                                                        <------ZmHOX2a(2)                                                                                       <---------ARR11(3)                                                                                       --------->ARR11(3)                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                            --------->ARR14(1)                                                                           --------->ARR14(2)                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                           <---------GLK1(2)                                                                           <---------ARR14(2)                                                                          --------->HSFB2a(1)                                                                          <---------HSFB2a(1)        <-----------GT1                                                   <---------HSFC1(2)       --------->AHL20(2)                <---------At4g35610     --------->AHL20(2)    <---------AGP1 --->ZmHOX2a(2)                          --------->At4g35610    <---------ATHB12       --------->AGP1 -----ARR14(2)              --------->GLK1(2)                   ------------>CBF      <---------At4g35610 -----ARR11(3)              <---------ARR14(2)                --------->WOX13(1)  <-----------HVH21<- -----AGP1>>>>>>>>>MYB98    --------->ARR11(3)   --------->ARR11(3)       --------->HSFC1(2)       -- ---->ARR14(2)              --------->ARR14(2)   --------->GLK1(2)--------->WOX13(1)  --------->At4g35610 ---->ARR11(3)              <---------ARR11(3)   <---------ARR11(3)  --------->YAB1   <---------CCA1(2) ----CCA1(2)     --------->ANAC46  ---------->DOF2          ------------>CBF--------->GLK1(2)     <--   tctactaaatttaacatatacagcatcaaaaatctgcaaaaggagctcaaaaatcttcagaaaacaatcaattagaagattctctgtcagatctcagaga  18779600                                                                                                 ----                                                                                                 ----                                                                                                -----                                                              --------->AHL20(2)       <------NtERF2                                                           ----------->GT1            --------->LBD16              --------->YAB1                              ----------->GT1             ------>NtERF2 ------>ZmHOX2a(2)                           --------->HSFC1(1)                      <---------ANAC46 ====HOX2a_HOX2a                             <---------HSFB2a(2)                     <---------LBD16 ====HOX2a_HOX2a                 --------->LBD16       ---------->DOF2  --------->HSFB2a(2)     ----- --------ARR14(2)               <---------ANAC58     <---------YAB1     <---------HSFB2a(2)     <---- ------->ARR14(2)               <---------ANAC58<<<<<<<ZML2<------ZmHOX2a(1)  <---------ATHB12<------ ----ZmHOX2a(1)          <-----------GT1     --------->HSFB2a(2)     <---------YAB1 <---------LBD16 <   ggatcgattttgaaaatcataagaaaattacattccgagtgtatcatctagaactatgaaaggataaaatgcttatagaaatcaatgccgggagagagta  18779700                                                                                                    -                                                                                                   --                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              ------>NtERF2                                                                                              <------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                            ---------       <---------SPL7                                                                       ---------       ----------->HVH21                                                                    ---------      ------>ZmHOX2a(2)                                                                    <---------ATERF1(1)     <------ZmHOX2a(2)                                                                     --------->LBD16    --------->ARR14(2)                                                                     --------->At4g35610    <---------ARR14(2)                                                                     ------>NtERF2 --------->ANAC46                                                                      <---------ARR14(2) --------->ANAC58                                                                --------->GLK1(2)<-- --------->ANAC58                                                            --------->ANAC58-------- ----->ANAC58                                                         <---------ARR14(2)  --------->ANAC46 ----->ANAC58                            --------->ATHB12             --------->ARR14(2) --------->MYB46(3) ---->ZAT18                         --------->MYB46(3)      --------->At4g35610 --------->ARR14(2)--- ---->SPL7                         ------->TEIL      <---------ARR14(2)      --------->ANAC46-------- -----ZAT18 ----------->GT1  --------->ICU4          --------->ARR14(2)      --------->ANAC58-------- ---SPL7    --------->LBD16<---------At4g35610       --------->GLK1(2)--------->GLK1(2)--------->ARR14(2) ---------LBD16    <---------HSFB2a(1)  <---------ATHB12    <---------At4g35610 <---------GLK1(2)<---   cgcacggatcggaccggagaaatgttcggagatgatgaaccaatgaatggaagcgaatcggaagctcaaacaaatctggacggaatctctatccgccgac  18779800  Previous    Next  AGI:  At2g45540.1    Description:  WD-40 repeat family protein / beige-related. similar to beige/BEACH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G60920.1); similar to hypothetical protein OsJ_015073 [Oryza sativa (japonica cultivar-group)] (GB:EAZ31590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24410.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68318.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Beige/BEACH (InterPro:IPR000409) Range:  from: 18764563    to: 18779303    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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