Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  ------>ZmHOX2a(1)                                              ------>ZmHOX2a(2)                                            --------->ARR11(3)                                            <---------ARR11(3)          --------->ANAC46                <---------YAB1                                          <--        --------->CCA1(2)          <-------TEIL <----------DOF2                               <------ -----LBD16          <------ZmHOX2a(1)  --------->YAB1                                   --------->ANAC46 ---->TOE1(2)        ================================HOX2a_HOX2a                   <---------ANAC55(2) ----->RAV1(2) <------ZmHOX2a(1)--------->At4g35610            --------->YAB1 --------->YAB1<--------   tggaactaatatacgaaggagaaggagtagaagtagcttcattcatgatcctttgagcatttctataatgaagaagagcatcatcatgtaaaccccactc  18759500                                                            --------->ANAC46         --------->GLK1(1)                                                            --------->ANAC58        --------->ARR14(2)                                                            --------->ANAC55(1)     <---------ARR14(2)                                                         --------->ARR14(2)       --------->LBD16                                                         <---------ARR14(2)      --------->ANAC46                                                     <---------At4g35610        <---------LBD16                                                    <---------TOE2(3)      --------->MYB52(2)                                                    <---------TOE1(3)    <---------MYB52(1)                                                ------>ZmHOX2a(1)       <-------GAMYB<---------GLK1(1)                                                <----------DOF2        --------->MYB52(2)       -------->P                              --------->TOE2(3)       <---------MYB46(3)     ----------->HVH21   ------>ZmHOX2a(1)  --------->ARR14(2)        <---------TOE1(2) -------At4g35610   <---------GLK1(1)       <---------ARR14(2)       <---------MYB52(1) ---ALFIN1          --------->GLK1(1)     --------->HSFC1(2)--------->ANAC55(2)--------->MYB52(1) -ALFIN1    <----------DOF2<----------DOF2<---------HSFC1(2)--------->ANAC58  <---------ARR14(2)   ttctgctctaacccctttagcgatttcctctttcgctaaatcgaagtatcctttaagcttatacgcaattcgttcgttagtaaccggaactccatcgata  18759600                                            <----------DOF2                                          <------ZmHOX2a(2)                                         <-----------ARR10                                         <-                          --------->ICU4 <---------ARR14(2)                                        --                          <---------YAB1 <---------ARR11(3)                                     <----                        --------->YAB1   --------->ARR14(2)                             <-----------GT1                       --------->ICU4    --------->ARR11(3)                           --------->YAB1            --------->At4g35610   --------->ZAT6    <---------GLK1(2)                <---------ATHB51          <-----------RAV1(2)<---------YAB1------>ZmHOX2a(2)                       --------->WOX13(1) <---------ATHB12      <---------YAB1   <------ZmHOX2a(1)                        <---------ATHB12 <--   ccattcatggactcagaagaagttgatgatgatgaaacactaggatctttcttagattcttcgttgagaatagagctaaacgaatcaattatacctctga  18759700            --------->ANAC58            --------->ANAC58            --------->ANAC46       <-----------ARR10                                                                            -      <---------CCA1(2)           --------->YAB1                                                   -- --------ARR14(2)                 <---------ICU4                                                 ---- ------->ARR14(2)                <------ZmHOX2a(2)                                               ---- -----TOE2(3)            --------->AHL20(2)                                                    <----- ----ZmHOX2a(1)          <---------AHL20(2) --------->LBD16                      ----------->GT1 ----   ggaaactcatatctaagcaataaacaataaaatcgatcatcacttccgagtttaatcaaacaaaaaacaaaaaaacatcaagaaggcaaaattggtttca  18759800                                              --------->YAB1                                        <-------TEIL                                       --------->CCA1(2)                                       --------->ARR14(1)                                      --------->ARR14(2)                                      --------->ARR11(1)                                      <---------ARR14(2)                                     <---------HSFB2a(1)                                     --------->HSFB2a(1) ------>TEIL                         --------->HSFC1(2) ------->ANAC46                      <---------HSFC1(2) ----->ANAC58                       ----------->ARR10 ----->ANAC46                   --------->HSFB2a(2)             --------->TOE1(2) ------GT1                      <---------HSFB2a(2)          <---------ARR14(2)          --------->ARR11(3) ----->ANAC58                  <---------ETT(2)              --------->ARR14(2)          <---------ARR11(3)   cgcaccatgttgtgctcgtatatataactcatgtcgagaagattcgaatcaaaatcgaaatcaaatccagcgaattgaagaaatttgatgaaatcttatg  18759900                                          <---------WRKY38(1)         --------->ANAC58                 <---------WRKY12         --------->ANAC58               <-----------HVH21         --------->ANAC46           --------->MYB52(1)         <---------ANAC55(2)       ------->GAMYB                       --------->HSFB2a(1)      --------->ARR14(2)          <---------ALFIN1 <-----------GT1     <---------HSFB2a(1)      <---------ARR14(2)     ------>MYB46(1)    <----------DOF2        <---------HSFC1(2)     <---------GLK1(1)   *TSS------>MYB83--------->WRKY18(1)     ---------->DOF2    <----------DOF2 ----------->GT1      --------->MYB46(3)<--------ZAP1 ------->GAMYB    --------->HSFC1(2)   aactgggaaatacgcaaacgatgaacaaaccaaacaacacacggtcaagtctttaaccctctacgtagaaagaaggttctaatgggctttacaaggccta  18760000                                     --------->PCF5                                   <---------ATERF1(1)                             <---------AHL20(2)                           <---------AHL20(2)                                      --------->AHL20(2)                       <---------CCA1(1)                                        --------->AHL20(2)                      --------->ARR11(3)                                        --------->AHL20(1)                      <---------ARR11(3)                                        <---------AHL20(1)                     --------->YAB1------>NtERF2                         --------->At5g28300                    <---------ATHB12<------NtERF2                        <-------GAMYB              <                ------------>CBF  --------->ALFIN1          --------->YAB1<---------MYB52(1) --------     <---------AHL20(2)<---------RVE1(1)                   <------ZmHOX2a(2)   <---------AHL20(2)  <-   tacatatataatcttaggcccaatgatattttatcggtggcccagttttgttttgttttcgatcatcttcttcgccgttaaatattttattctctacggt  18760100                                --------->WRKY38(1)                                --------->WRKY12                                                   --                                --------->WRKY45                                                  <--                      <---------GLK1(2)                                                          ----                      --------->ARR14(2)                                                         <---     ---------->ID1   <---------ARR14(2)                      --------->GLK1(2)                  <--- ----------DOF2      <---------At4g35610        *TSS         <---------ARR11(3)                  ---- ->ANAC46<----------DOF2    <---------YAB1      ---------->DOF2                                 ----- --------DAG2   <----------DOF2--------->DOF5.7(2)           --------->ARR11(3)             ---------   accttttgtctctttgtactttcagatactatcgttgacttcgaagtaagaaaagaaaatggagattttgacgagcatagctattacagtagcaacaacg  18760200                                                                                      --------->ANAC58                                                                        --------->GLK1(1)                                                      <---------ATHB12  --------->CCA1(2)                                                    --------->GLK1(1)  --------->ARR11(1)                                                --------->LBD16        <---------ARR14(2)       <---------MYB52(1)                 <----------DOF2              --------->ARR11(3) ---->ZmHOX2a(2)                         <---------ICU4                <---------ARR11(3)       ----- ----ZmHOX2a(2)                        --------->GLK1(2)      --------->ANAC58        --------->ANAC46 ----->ARR11(3)                        <-----------ARR10    --------->MYB52(1)        --------->ANAC58 ------ARR11(3)                        <---------ARR11(3)--------->ANAC58           <---------ANAC58 ------ARR14(2)                       <---------GLK1(2)  --------->ANAC58           <---------ANAC58 ----->ARR14(2)                    --------->YAB1--------->LBD16       --------->ARR14(2)       <---- -->GAMYB        <-----------GT1--------->YAB1 <---------LBD16<----------ID1       --------->ZAT14  - >MYB46(3)<---------ANAC46     <---------YAB1 <---------LBD16 --------->ANAC58     <---------ZAT18  <   atcttcatcgttttgtgtttcactatctatcttatgatcagaatctttaccgggaaatcaagaaacgacaagagatatgctccagtgcatgccacggtct  18760300                                                             ------>NtERF2                                                             <---------RAP2.6(3)                                                            --------->RAP2.6(2)                 <----                                                            --------->DEAR3(1)                 ------                --------->DEAR3(1)                         --------->DEAR3(2)                  <-----  ------>ZmHOX2a(2)                           ------>ZmHOX2a(2)                     ================= ---------------->WRI1                       <------ZmHOX2a(2)                      <------ZmHOX2a(1) ------DOF2<---------ALFIN1       <---------ANAC55(2)     --------->At4g35610       ================= -------->ARR11(3)                --------->ANAC55(2)    --------->GLK1(2)         ----------->HVH21 ---------ARR11(3)   ----------->GT1        --------->ARR11(3)                     --------->ANAC46 <   ttgatcttctcttccacagcgacgagttatacgattacgagacagagatcgcgagagagaagccgacttacaggtttttgagtccaggacagagcgagat  18760400  Previous    Next  AGI:  At2g45500.1    Description:  ATP binding. similar to ATPase [Arabidopsis thaliana] (TAIR:AT3G27120.1); similar to Tobacco mosaic virus helicase domain-binding protein [Nicotiana tabacum] (GB:AAL25088.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain MIT (InterPro:IPR007330); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 18756872    to: 18759925    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g45510.1    Description:  CYP704A2 (cytochrome P450, family 704, subfamily A, polypeptide 2); oxygen binding. similar to CYP704A1 (cytochrome P450, family 704, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G44890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24404.1); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) Range:  from: 18760148    to: 18762246    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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