Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ANAC58          --------->ANAC46          --------->ANAC58                                                                      -----       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               --------->ZAT18      --------->ANAC46                                   <----------DOF2    <---------ATHB12    ----- ----------GT1                                      xxxxxxxxxxxxxxxx>smallRNA(i)          --------->TCP16(2) ------WOX13(1)                           --------->ANAC58        --------->ANAC58       <---------TCP16(1) --->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <------ZmHOX2a(1) --------->ANAC58       <---------TCP11(2) --->ATHB12                               --------->ANAC58   --------->HSFB2a(2)         <---------TCP20 -->ICU4<---------ALFIN1                  --------->ANAC46   <---------HSFB2a(2)         <---------PCF5 --WOX13(1)    --------->ANAC46   xxxxxxxxxxxxxxxx>smallRNA(i)   --------->DEAR3(1)      --------->PCF2   ttaacttcccacaatccacacgagttcagcatttgtctaaattcaaggcaggatgactcctttctcgcaggccctccaatcttctccgaggggtccacaa  18662100       --------->ARR11(3)       <---------ARR11(3)    --------->AHL20(2)    <---------AHL20(2)                                           ----------->RAV1(1)                x   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           <---------ALFIN1  --------->At4g35610 ---->ANAC58   <---------MYB52(1)     --------->ANAC46  <-----------GT1       <----------DOF2  <----- ---->ANAC58 ------>ZmHOX2a(1)<---------ALFIN1    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------At4g35610   gctcattaaaatctcctgttagcatccaagggccacttctactcaatcccagtcttgttaacctctcccacagttctcccctttcagcttgaacaggttc  18662200                                                      <---------AHL20(2)                                                      --------->AHL20(2)                                                   --------->WOX13(1)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              ----------->GT1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)              <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ALFIN1      ----------------->AG<---------ATHB12         <---------At4g35610     ----------------->AGL1         --------->At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                         <--------         <---------ZAT2       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <---------ZAT14   ---------->DOF2           <---------ANAC58--------->ANAC58                         --------->ZAT14 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <----------DOF2------->TEIL --TEIL<-----------RAV1(2)   <---------ANAC58--------->ANAC58    --------->YAB1     ------>ZmHOX2a(2)   accataaatgcaggtgaggtaaaactccttgtcttgccatatcagtaacgcatcaattaatcttttatcagattgtagcactttgatctgtactgaatct  18662300                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               --------->RAP2.6(3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                     --------->AHL20(2)                              --------->ARR14(2)                             <---------GLK1(2)                              <---------ARR14(2)                          <---------ALFIN1                              --------->MYB52(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   --------->AtMYB61                                    ------>MYB46(1) <---------ICU4                   <---------ALFIN1                                     -------->P     <---------AHL20(2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 ------>MYB83   <---------ATHB51                  --------->MYB46(3)  ----------->RAV1(1)             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58  <---------ATHB12                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->AtMYB61 --------->At4g35610           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------ATHB12  <---------ANAC58  --------->AHL20(2)   ttccacattagagctagaccaccactcttccctatcggctcaacagtatgcaaatcaaaaaatccaagatggcctaccacattctccaaataatttcttc  18662400                                                                      <---------ANAC46                                                                      --------->ETT(1)                                                                    <-----------HVH21      <<<<<<<GRF7                                                                   ================================RAV                                                                   <-----------RAV1(1)    -----------                                                                   ----------->HVH21     ----------->HVH21                                                                <---------ARR14(2)     xxxxxxxxxxxxxx                                                         <---------At4g35610         --------->DEAR3(1)                                                         --------->At4g35610        <---------ALFIN1                                                         <---------ZAT2             --------->ANAC58                                                         --------->ZAT2             --------->ANAC58                                                       <-----------RAV1(2)  <---------ARR14(2)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB46(3)                                            --------->ANAC58  <---------MYB59   xxxxxxxxxxxxxxxxxxxxx                                            --------->ANAC58 <------NtERF2  --------->ARR14(2)                             --------->LBD16<---------ANAC55(2) --------->ARR14(2) ------>NtERF2    -                            --------->HSFB2a(2) --------->GLK1(1) <------------AtMYB77 ----------->RAV1(2)                            <---------HSFB2a(2)------->TEIL--------->ALFIN1<----------TaMYB80       -                           <---------LBD16  --------->ANAC55(2)<---------RAP2.6(3)--------->ANAC46  <                      <-----------GT1  --------->ANAC46========================RAV<---------ALFIN1  <                <------ZmHOX2a(1)--------->GLK1(1)    <---------MYB52(1)<------NtERF2<---------ALFIN1   tcttcttagtctcacagaggaatataacctctgggaaatacagaccacgtatttccctcaggtgccgaactgtcggggtattccccaccccctgacagtt  18662500           ------>ZmHOX2a(1)       <---------ARR14(2)       --------->ARR14(2)       --------->GLK1(2)                                                        <---------TOE2(2)      <---------GLK1(2)                                                        <-----------RAV1(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    --------->YAB1 ->AtMYB77--------->TOE2(3)                   -------->P                <---------ATHB12   --------->HSFB2a(2) xxxxxxxxx>smallRNA(se3)                    --------->MYB46(3)    ---------->ID1<---------TOE1(2) xx>smallRNA(se3) <---------AHL20(2)     ------->GAMYB   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -------->At4g35610             <------MYB46(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <---------HSFB2a(2) -------->ZAT2    *TSS          <------MYB83--------->AtMYB61   ===========================RAV ---------ZAT2   --------->AHL20(2)   <-----------GT1<----------DOF2    <---------YAB1  --------->CCA1(2) ---------At4g35610           <--------P--------->MYB46(3)      <-----------RAV1(1)<--------P   ccagctcagaatcctcattttaaattcgaagggttggaattaaccatcaacccttctttcaagtttttgttgctatcattctcaggtaagataccagaag  18662600                                                           <---------At4g35610                                                      --------->TGA1a                                                      <---------TGA1a                                                      --------->O2                                                      <---------O2                                                    ----------->RAV1(1)                                                  ------>NtERF2                                                 >>>>>>>>>AtERF-4                                 <---------ICU4<---------ZAT2        ------>ZmHOX2a(2)              ------>NtERF2      --------->ATHB12>>>>>>>>>AtERF-3  --------->ARR11(3)           <---------ANAC58      --------->YAB1<---------At4g35610 <---------ARR11(3)           <---------ANAC58     --------->ICU4 --------->ZAT2   <---------KAN4(2)           --------->At4g35610  <---------YAB1 --------->At4g35610--------->YAB1       <------------CBF   <------NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->AtLEC2      --------->ATHB12 <------ZmHOX2a(1)<---------AHL20(2) --------->At4g35610    --------->GLK1(1)   agtgagagcgattggctgccactgaggaggcagaatgattagataattgagctgccacatgagcagaatgatcttgatgaacagagttctccttgcagat  18662700                                                            <-----------HVH21                                                       --------->ZAT18                           <---                                                       <---------ZAT14                       <-------                                                       --------->ZAT14                       <-------                                                     <---------ZAT18                        <--------                                                    <---------ANAC58                --------->GLK1(2)                  ----------->HVH21                 <---------ANAC46               <---------ARR14(2)              <---------ANAC58                      <---------ANAC58               --------->ARR14(2)              <---------ANAC58                   --------->ALFIN1                  <---------GLK1(2)            ------->TEIL                    <------ZmHOX2a(1)                    ----------->ARR10---         <---------REM1(1)       ---------->DOF2 <---------AtMYB61       <---------YAB1     <--------   tgagctagaagatgaagcttgtgaccctaacctttcaaagacagaaggagagtggtgtgctctgtcatttgaattacgatggccagattctcttgctttt  18662800                                                                --------->At4g35610                                                               ------->GAMYB                                                              --------->MYB46(3)                                         <---------TOE1(3)   -------->P                                         <---------TOE2(3)   ------>MYB46(1)                                      <----------CDC5        ------>MYB83    <---------WOX13(1)               <---------At4g35610    --------->MYB52(1)   <---------ANAC58                  --------->At4g35610    ------>MYB46(1)   <---------ANAC58                  <---------ZAT2         ------>MYB83   <---------ANAC46                  --------->ZAT2       <---------MYB59 ------YAB1  -------->P            <---------DEAR3(1)     --------->MYB46(3)                <-------- --DAG2      ------>MYB46(1)      --------->ATERF1(1)    --------->ANAC58             --------->TOE2(2) ---DOF2     ------>MYB83         <---------At4g35610    --------->ANAC58             --------->TOE1(2) -ANAC58    <---------ALFIN1     <---------ATERF1(1)--------->HSFB2a(2)       ----------->GT1       < ------>ATHB12 <---------DAG2   --------->ZAT18     <---------HSFB2a(2)    <---------At4g35610     <- -ANAC58 ------>ZmHOX2a(2)      <---------RAP2.3(3)<---------LBD16  ---------->DOF2  ----------->RAV1(2)   tcattgcttgatcccaacctttcgaaaacagaagggggctgctgaggtttttctccagaacccaaccgctcaaagacagatggtgaaacctgagactctt  18662900                                              <---------YAB1                                            --------->ATHB12                                            <--------HAHB4                                 <---------bZIP60(1)                                            <---------ICU4                                 <---------O2                                            --------->ATHB51                            ----------->HVH21                                            -------->ATHB1                              --------->ANAC58                                           --------->ICU4                               --------->ANAC58   --------->At5g28300            --------->YAB1                             <---------YAB1--------->bZIP60(1)  --------->LBD16                <---------AHL20(2)                         --------->AHL20(1) --------->LBD16             --------->AHL20(2)       --------->WRKY38(1)  --------->AHL20(2) ---ARR10    --------------->AGL15<---------ICU4      --------->WRKY12     <---------AHL20(2) <------ ---------LBD16        ---------->DOF2     <---------YAB1         ---------->DOF2       --------->ANAC46 --------LBD16 <---------GLK1(2) <---------ATHB51  <---------MYB46(3)      --------->ATHB51--------->O2   ctcccggtgaattttcagattttagaaaagaataaataatgaagaattattagtcgttgacaaaacaaaaaagagaattattttagtcacacgacgtcgt  18663000  Previous    Next  AGI:  At2g45230.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.9e-46 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 18658394    to: 18662518    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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