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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                <---------ANAC46                                                     ------>ZmHOX2a(2)
                <---------ANAC58                                                    <------ZmHOX2a(2)
                <---------ANAC58                          ---------->DOF2          --------->ARR11(3)
               <-----------------------TaNAC69(2)      ====================================HOX2a_HOX2a
           ---------->DOF2         ---------->DOF2     ------>ZmHOX2a(1)           <---------ARR14(2)
        --------->TOE2(3)        =============================HOX2a_HOX2a          --------->ARR14(2)
       ----------->GT1           ==========================HOX2a_HOX2a             <---------ARR11(3)
       --------->ANAC58          <------ZmHOX2a(2)     =====================================HOX2a_HOX2a
  --------->HSFB2a(2)    <---------REM1(1)   <-----------GT1                   ---------->DOF2
-YAB1  --------->ANAC58 <---------------------WRI1  ------>ZmHOX2a(1)    ---------->DOF2
 
aatttgcagaacgtaaaagccgtgtttgatgaagcgatcaaagtagttttacatcctccttcaaagactaagaagcgaaagagaaagatcggtttatgcc  18437700
            --------->ZAT18                                                                   ------
            <---------ZAT18                                                         <---------ARR11(3)
            <---------ZAT14              <-----------GT1                            <---------GLK1(2)
            --------->ZAT14    <---------AtMYB61                                    --------->ARR11(3)
           <---------ZAT6    <----------DOF2                                        --------->ARR14(2)
    --------->WRKY45        <---------ANAC58                                        <---------ARR14(2)
  <----------DOF2           <---------ANAC58   <----------DOF2           <------ZmHOX2a(1)   <------
 
atgttctttgactagtgtactcaagtctctggctttggtttgttttacatcttttttagtgtgtttcttctatgaaggactcttgcagattttagtatga  18437800
                        ------>ZmHOX2a(2)
                      <---------ARR11(3)
                      --------->ARR11(3)            --------->YAB1    --------->WOX13(1)
--->ATHB12    ---------->DOF2        --------->GLK1(2)       --------->ARR14(2)          -----------
---YAB1     <---------YAB1          <---------GLK1(2)        <---------ARR14(2)     ---------->DOF2-
 
ttagctatcttcgttataaaagtttgatcttgtagtagagattcttgtaacagaattataagcgaattctcgtctatcagtctatgtaaaagaacaatgt  18437900
    <----------DOF2                 <----------DOF2         <-----------GT1 --------->GLK1(2)  -----
->CBF                     ---------->DOF2         <----------ID1           <---------GLK1(2) <------
--------->ID1          ----------->RAV1(1)    ---------->DOF2    <------------CBF    --------->AHL20(2)
 
ttgtcttctttgagttcaagagacaacaacaaagaaccgttttagcgcaaaaagaaacaaaataaaccgattgaaacagaatcgaagaataaataaaccg  18438000
                                                  ------------>CBF
                                                 --------->TOE2(3)
                                               --------->ARR11(3)
                                               <---------ARR11(3)
                                       <---------ATHB12
                      --------->ARR14(2)    --------->AHL20(2)
                      <---------ARR14(2)    <---------AHL20(2)
                   --------->ANAC46    ------------>CBF                                            <
---->LBD16         ------->GAMYB     --------->WOX13(1)                                            -
---LBD16        --------->MYB52(1)  <---------AHL20(2)                <----------DOF2              <
 
ggttttgttttttggctaataaccgaaaccgaaatagaataaatcaataaaatctcaattctctagtcttctcctttaaactagagtcgatgtctagctc  18438100
                                <-----------HVH21           <------NtERF2
                        <---------ATHB12                    <---------MYB52(1)
                        <---------MYB55(2)                 <---------RAP2.6(3)
                        --------->MYB46(3)                 <-----------HVH21
                       ------>MYB83                        ------>NtERF2
                     <---------MYB111(1)                   <-----------TGA1
        --------->LBD16------>MYB46(1)                    --------->DEAR3(1)
       --------->DEAR3(1)------->GAMYB                    --------->RAP2.3(3)
    --------->AtMYB61<---------MYB111(2)              <------NtERF2
    --------->DEAR3(1) -------->P                     --------->ATERF1(1)
    <---------ALFIN1--------->MYB46(3)               <---------ATERF1(1)
   --------->DEAR3(2)<---------MYB55(2)         <------NtERF2                                      <
   --------->MYB46(3)--------->MYB46(3)         --------->At4g35610                                -
   <---------MYB55(2)--------->AtMYB61    --------->At4g35610                                      <
  ------->TEIL     ------>MYB83 <-----------TGA1<---------At4g35610                      <---------ICU4
------->GAMYB   --------->DEAR3(2)        <---------At4g35610          <-----------HVH21<---------ATHB12
---------MYB52(2)  ------>MYB46(1)        <------NtERF2   --------->ANAC46              --------->ICU4
-------->MYB46(3) --------->ORA47(1)<---------At4g35610  --------->RAP2.3(1)          --------->GLK1(1)
---------MYB55(2)--------->DEAR3(1) --------->At4g35610--------->DEAR3(1)             <---------GLK1(1)
 
caacgaaccaccgcgaaaaaccgaccaaccatcgtcgtcatcggcatcggcatcggcatcgccgtcattgtttttgtcactgccactggaaatcatttcg  18438200
                                       <---------ZAT2
           <-----------HVH21           --------->ZAT2
         <------NtERF2                 <---------At4g35610                                         -
         --------->LBD16               --------->At4g35610                                --------->ANAC58
       <---------LBD16              ------>ZmHOX2a(1)                                     --------->ANAC58
 ------>ZmHOX2a(2)              <---------ARR14(2)                           ----------->RAV1(2)   <
---------ARR11(3)               --------->ARR14(2)                    <---------ZAT18 <-----------GT1
-------->ARR11(3)         <-----------GT1                   --------->LBD16--------->ANAC58      <--
-----------ARR10      <---------ARR11(3)                  <---------LBD16  --------->ANAC58      ---
 
atgatcttagcccgcgtcccaaaacgatattacccaatcctctgctccgtctccaagaacatgcggagtcttgttcgctcgcctgaaattcacaaggctc  18438300
            --------->ICU4                                                           --------->GLK1(2)
          ---------->DOF2                                <---------ARR14(2)     --------->LBD16
     <---------LBD16      --------->RAP2.6(3)            --------->ARR14(2)   <---------LBD16
<----------DOF2          <---------ARR14(2)            --------->LBD16  <---------ALFIN1         ---
----->ZmHOX2a(2)         --------->ARR14(2)           <---------ANAC46 <---------ZAT18       <------
---------ICU4 <---------GLK1(2)<----------DOF2       <------NtERF2     --------->ZAT14       -------
-------ARR11(3)    --------->ZAT6              <-----------GT1         <---------ZAT14      <-------
------>ARR11(3)  <---------ARR11(3)           <---------ICU4           --------->ZAT18  <---------HSFB2a(2)
 
gatctttactcggaaaagattatctctatatcggcttcatcgacgaaaattatcgccccgtatacgactactggtacactctccggagaatcgagaacag  18438400
                                                                                   =================
                                                                                   ------>ZmHOX2a(2)
                                                                                  ==================
                                                                                 --------->AGP1
                                                                                 <---------ARR14(3)
                                                                                 --------->ARR11(3)
                                                                                 <---------ARR14(2)
                                                                        <------MYB46(1)
                                                                        <---------MYB46(3)
                                                                        <------MYB83              --
                                                                        <---------DEAR3(2)        <-
                                                                       <---------AtMYB61          --
                                                                      <---------MYB52(1)          <-
       --------->GLK1(2)                 <---------ANAC58            <-------GAMYB<------ZmHOX2a(2)
      <---------GLK1(2)         <---------MYB52(1)               --------->ANAC58<---------ARR11(3)
------>SPL7      --------->ARR14(2)      <---------ANAC58        --------->ANAC46--------->ARR14(2)
---------AtSPL3  <---------ARR14(2)   ------>ZmHOX2a(1)          --------->ANAC58--------->ARR14(3)
-->ZAT6<-----------ARR10       <---------DAG2                   ------->TEIL     <-----------ARR10--
--ZAT14<---------ARR14(2) <---------GLK1(1)                <---------AtLEC2    ----------->ARR10 <--
 
tacgaccgagaatctcttcgaatccattgagttcccttatccttccgagcctaatcgattttccatgaacgccgttggtccaaagatcttcttcatttca  18438500
            --------->REM1(1)                         <-----------HVH21
          =========================HOX2a_HOX2a       <---------ANAC46
          ------>ZmHOX2a(1)                          <---------ANAC58
       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ANAC58
 --------------->AtSPL8                          <---------At4g35610
=================HOX2a_HOX2a            <---------ARR14(2)   --------->ARR11(3)
=================HOX2a_HOX2a            --------->ARR14(2)--------->ANAC58
------->GLK1(2)                     <-----------------AGL1--------->ANAC58                         <
--------ARR11(3)               ----------->HVH21 <-------GAMYB                                <-----
------->ARR11(3)            ------>ZmHOX2a(2)    --------->At4g35610        <---------ZAT14   <-----
--------ARR14(2)          <---------ARR11(3)     <---------GLK1(1)     <---------ANAC58       <-----
------->ARR14(2)          --------->ARR11(3)    --------->ALFIN1       <---------ANAC58<-------TEIL=
-------GLK1(2) <---------ICU4<----------DOF2<---------LBD16 <------ZmHOX2a(1)        --------->ZAT18
 
gaatcttgtactccttcatcaagactttcgatctttgacacccgatttggggagttgcgtcaaggaccttgtttgctagtgaagcgagggtacaattgcg  18438600
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AGI:  At2g44690.1   
Description:  ARAC9/AtROP8/ROP8 (rho-related protein from plants 8); GTP binding. Identical to Rac-like GTP-binding protein ARAC9 precursor (ARAC9) [Arabidopsis Thaliana] (GB:Q9XGU0;GB:O80508); similar to ARAC3/ATROP6/RHO1PS/ROP6 (rho-related protein from plants 6), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT4G35020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70494.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); cont
Range:  from: 18436339    to: 18437879    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At2g44700.1   
Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At2g44700 [Arabidopsis Thaliana] (GB:Q84RE1;GB:O80509); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043)
Range:  from: 18438090    to: 18439196    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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