Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
--------->
GLK1(1)
--------->
AHL20(2)
<---------
AHL20(2)
<----------
ID1
<---------
ICU4
-------->
LBD16
<---------
AHL20(2)
------->
LBD16
--------->
AHL20(2)
--------
HSFB2a(2)
<--------
ATHB1
-------
LBD16
--------->
ATHB51
------
LBD16
--------->
MYB46(3)
<---------
ATHB51
----
ARR14(2)
<----------
ID1
--------->
ICU4
<-----
--->
ARR14(2)
---------->
DOF2
<---------
LBD16
<---------
ATHB12
---------->
DOF2
ccgggaaattaagacaaatgtttcaaagagaacaaacatgttctgggttaaactaaaaatcgatactttccaccaataatttaacagaaacccaaagctt
18019900
---------->
DOF2
----------->
RAV1(1)
<----------
ID1
--------->
At5g28300
<<<<<<<
ZML2
----------->
GT1
<---------
STY1(2)
----------->
GT1
-----
DOF2
--------->
STY1(2)
>>>>>>>>>
TBF1
<----
tctacttcaaatttgtgatttagagtagctagaacaacaaagagaagagtaagtgagagagagagagagagagagagagagagaagaagaagggtaaatt
18020000
<---------
HSFC1(2)
--------->
HSFB2a(1)
--------->
HSFC1(2)
=
<---------
HSFB2a(2)
<
--------->
HSFB2a(2)
<--
<---------
LBD16
-----
<---------
ANAC46
<----
--------->
YAB1
<---------
ARR14(2)
------>
ZmHOX2a(1)
--------->
WRKY18(1)
--------->
ARR14(2)
<---------
ZAT18
--------->
AtLEC2
<------
ZmHOX2a(1)
<---------
ATHB12
<---------
YAB1
-----
-------
GT1
<------
ZmHOX2a(1)
--------->
GLK1(2)
--------->
ANAC46
<---------
HSFB2a(1)
<----
ac
tccatggaagaggaggtcaagaagaggagaatcataaacagacttgatttcatctctactccaatcgtttctgggaccttctctgatagtcctctcag
18020100
--------->
At4g35610
----------->
HVH21
--------->
ZAT2
====================
RAV
<---------
ZAT2
----------->
RAV1(2)
<---------
At4g35610
--------->
At4g35610
----------->
HVH21
=====================
RAV
--------->
LBD16
<------
ZmHOX2a(2)
-----------
RAV1(2)
--------->
ANAC46
<---------
ZAT2
-
---------
HVH21
------>
MYB46(1)
<---------
At4g35610
----
---->
ZAT2
<---------
At4g35610
------>
MYB83
--------->
ZAT2
------
-----
ZAT2
----------->
RAV1(1)
<---------
ALFIN1
--------->
At4g35610
------
---->
At4g35610
--------->
AtMYB61
--------->
ANAC58
------
-----
At4g35610
--------->
ARR11(3)
--------->
MYB46(3)
--------->
ANAC58
<------
ZmHOX2a(2)
cttcagctgaagcagcagataatgaagaatagcaagaagcagattgcagaccacccgagacagagggtcgcaactgagatcgaaatacagatcgaacaag
18020200
<------
MYB46(1)
------>
ZmHOX2a(2)
<---------
MYB46(3)
<---------
At4g35610
<------
MYB46(1)
-------->
ATHB12
<------
MYB83
<---------
ZAT14
----->
YAB1
>>>>>>>>>
TBF1
<---------
AtMYB61
--------->
ZAT14
--->
ANAC58
>>>>>>>>>
TBF1
--------->
CCA1(2)
<-----------
GT1
--->
ANAC46
>>>>>>>>>
TBF1
----------->
ARR10
<----------
DOF2
--->
ANAC58
--------->
YAB1
---------->
DOF2
--------->
CCA1(2)
<------
MYB83
<---------
ARR11(3)
catcat
ttgatctgctaatcagaaaatgtggaaaaagaagaagaagaagaaatgagatttggtgtttggtttgtgctagagcttttcactcttcagtgag
18020300
------>
NtERF2
<---------
ABI4(2)
--------->
ATERF1(1)
<---------
ATERF1(1)
--------->
At4g35610
*
TSS
<---------
MYB55(2)
---------->
DOF2
>>>>>>>>>
MYB98
------>
MYB46(1)
------>
MYB83
--------->
MYB46(3)
--------->
MYB52(1)
<---------
PCF2
--------->
MYB55(1)
--------->
TCP15(1)
<---------
MYB52(2)
<---------
LBD16
--------->
HSFB2a(2)
<---------
MYB46(2)
--------->
ARR14(2)
------>
MYB83
<---------
MYB59
--------->
DEAR3(1)
<---------
ANAC58
--------->
TOE2(3)
--------->
AtMYB61
<------
NtERF2
<---------
ANAC46
<---------
YAB1
<---------
MYB111(1)
<---------
ARR14(2)
------>
MYB46(1)
<----------
DOF2
---
<---------
MYB111(2)
<---------
MYB52(1)
--------->
ALFIN1
--------->
ARR11(3)
--------->
At5g28300
--------->
ANAC46
<---------
ALFIN1
------>
NtERF2
--------->
PCF2
<---------
CCA1(2)
--------->
YAB1
--------->
ANAC55(2)
<-------
GAMYB
<---------
ANAC58
<---------
ARR11(3)
----------->
GT1
<--
<---------
At4g35610
--------------------->
WRI1
--------->
TOE1(2)
<---------
ARR11(3)
<----
<-----------
GT1
--------->
RAP2.6(2)
--------->
LBD16
--------->
TOE2(2)
--------->
ARR11(3)
---------
tgattcacctaaccc
aaagcagccaccgttggagtttccgccttcgtgtgggacctacgagaatatcatatatctttaactgggctgtaataagcccaat
18020400
----------->
HVH21
<-----------
HVH21
--------->
LBD16
--------->
O2
<---------
O2
--------->
TGA1a
<---------
ANAC46
<---------
TGA1a
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
RRTF1(3)
--------->
RAP2.6(2)
--------->
DEAR3(1)
--------->
RRTF1(1)
--------->
ERF1
<------
NtERF2
--------->
RAP2.3(1)
--------->
DEAR3(2)
--------->
MYB46(3)
--------->
ORA47(2)
--------->
DEAR4(2)
<---------
ABI4(2)
--------->
ATERF1(1)
--------->
RAP2.6(1)
<---------
At4g35610
--------->
ABI4(2)
--------->
ZAT2
------>
NtERF2
<---------
RAP2.3(1)
--------->
At4g35610
<---------
ATERF1(1)
<---------
ARR14(2)
--------->
ARR14(2)
<------
NtERF2
--------->
ATERF1(1)
<---------
ATERF1(1)
<---------
ICU4
<----------
DOF2
--------->
LBD16
<---------
AHL20(2)
*
TSS
------>
ZmHOX2a(1)
<------
NtERF2
<-----------
RAV1(1)
------------>
CBF
=====================================
bZIP_DOF
<------
NtERF2
------>
AHL20(2)
<---------
ATHB12
<---------
YAB1
<---------
LBD16
<--------
-------
AHL20(2)
--------->
YAB1
<---------
MYB52(1)
--------->
MYB46(3)
<---------
ANAC46
-------
TBP
--------->
AHL20(2)
------>
NtERF2
--------->
TOE1(3)
<---------
RAP2.6(3)
<---------
DEAR3(1)
--->
CBF
<----------
DOF2
--------->
DEAR3(1)
--------->
TOE2(3)
------>
NtERF2
--------->
ALFIN1
ttatatgttgggctttttaatagtaatcaattcaaacgacgacgtt
attctttatttccttaaacagccggagccgccgtgagagagagagagtcggggg
18020500
<-----------
HVH21
--------->
DEAR3(1)
--------->
TGA1a
<------
ZmHOX2a(1)
<---------
O2
<------
NtERF2
<---------
TGA1a
<---------
DEAR3(1)
--------->
O2
<-------
--------->
ALFIN1
<---------
bZIP60(1)
--------->
ANAC58
<---------
ANAC46
<---------
bZIP60(2)
--------->
ANAC46
<------
NtERF2
--------->
bZIP60(2)
--------->
ANAC58
--------->
ATERF1(1)
--------->
ANAC46
<---------
LBD16
<---------
LBD16
----------->
HVH21
--------->
ETT(2)
<---------
RAP2.3(1)
--------->
ANAC46
--------->
HSFC1(2)
<---------
DEAR3(1)
--------->
ZAT18
<---------
CCA1(2)
<---------
HSFC1(2)
<---------
RAP2.3(2)
---------->
DOF2
--------->
bZIP60(1)
<------
NtERF2
<-------
--------->
At4g35610
==========================
bZIP_DOF
--------->
LBD16
<--------
--------->
CCA1(2)
--------->
MYB52(1)
--------->
ANAC58
<---------
LBD16
--------->
ARR14(2)
-
LBD16
<---------
At4g35610
<---------
ANAC46
--------->
ANAC58
--------->
ANAC46
<---------
ARR14(2)
agaagaa
atgagcggcggaggaaacaacgtcgtgaacaaagtgttctacgcgacgtcgtatcatccgattcaagccggaagtatcgacggaactgatgtt
18020600
<------
NtERF2
<---------
SPL7
<-----------
HVH21
------>
NtERF2
<---------
ANAC58
<---------
ANAC58
<---------
DAG2
--------->
YAB1
--------->
ZAT14
<---------
<---------
YAB1
<---------
ANAC46
<-----------
GT1
<---------
ALFIN1
--------->
SPL7
<---------
ANAC58
<----------
DOF2
--
REM1(1)
--------->
DEAR3(1)
<---------
ANAC58
------>
ZmHOX2a(1)
----
RAV1(1)
------->
GAMYB
<---------
ARR11(3)
------>
NtERF2
--------->
ARR14(2)
--------->
At4g35610
-
TOE2(3)
--------->
MYB52(1)
--------->
YAB1
------->
TEIL
<---------
At4g35610
<-
gctccacatgataacggcgtccgtcgagctcttctctgttataacgctggcttat
gtatgtatactctctcgttctctctgctcctcttttcacttttat
18020700
--------->
ZAT14
<---------
ZAT18
<---------
ZAT14
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(3)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
MYB46(3)
--------->
GLK1(1)
===================================
HOX2a_HOX2a
<------
MYB83
------>
ZmHOX2a(1)
<---------
GLK1(1)
<------
MYB46(1)
<---------
MYB46(3)
==================================
HOX2a_HOX2a
<-
<---------
AtMYB61
<--------
P
------>
ZmHOX2a(2)
<-------
GAMYB
--------------->
AtSPL8
-
DOF2
--------->
ATHB12
<---------
ARR11(3)
<---------
MYB46(3)
<----
--------
MYB52(1)
<-------
TEIL
<-------
GAMYB
--------->
ARR11(3)
<-----------
RAV1(1)
--------->
ZAT14
cgtttggtttctgaattcaaatacattgatttgggttgttttgaaag
atgatccttctggtgattcgaaggctgttggagatccttactgtactctcttc
18020800
Previous
Next
AGI:
At2g43360.1
Description:
BIO2 (BIOTIN AUXOTROPH 2); biotin synthase. Identical to Biotin synthase (BIO2) [Arabidopsis Thaliana] (GB:P54967); similar to biotin synthase [Brassica rapa subsp. pekinensis] (GB:ABI63585.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Biotin synthase; (InterPro:IPR002684); contains InterPro domain Biotin and thiamin synthesis associated; (InterPro:IPR010722); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785)
Range:
from: 18017828
to: 18020315
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g43370.1
Description:
U1 small nuclear ribonucleoprotein 70 kDa, putative. similar to U1-70K (SPLICEOSOMAL PROTEIN U1A), RNA binding [Arabidopsis thaliana] (TAIR:AT3G50670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64769.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 18020447
to: 18022531
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version