Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->ANAC46                                --------->ANAC58            <----------DOF2     --------->ANAC58        --------->ZAT18         <----------ID1                                                     <-  --------->MYB52(1)   ----------->GT1                   --------->YAB1                        ------ ------>ANAC58         --------->O2                      --------->AHL20(2)                --------->AHL20(2) ------>ANAC58    --------->AtLEC2             --------->CCA1(2)                           <---------AHL20(2) -YAB1  <---------ZAT18<---------O2         <---------YAB1                              --------->YAB1   aagccaagggtgccctttcaatgcaacgtgataaacgccaaaaacgatgatatgaacaattataaactcgttgagagcattgaactcggataataaatca  17893100                                             <---------ANAC46                                             <---------ANAC58                                     <---------AHL20(2)                                     --------->AHL20(2)                                     --------->AHL20(1)                                     <---------AHL20(1)                                    --------->AHL20(2)                              --------->ANAC46                              --------->ANAC58                              --------->ANAC55(2)                              --------->ANAC55(1)                              --------->ANAC58                                        --------->ARR11(3)                              ----------->GT1<---------ANAC58                         <---------ARR11(3)       <-------TEIL           <---------ANAC55(2)                                    --------->YAB1  --------->AHL20(2)--------->MYB46(3)      <---------TOE2(3)                      <---------TOE2(3) ---------DOF2  XXXXXXXXXXXXXXXXXXXX>MIR851-3P  ---------->DOF2                   ---------->DOF2 --->YAB1     <---------TOE2(2)     <---------AHL20(2)---------->DOF2    <----------ID1   tcttttatatacatcgtagataacaaacaaacacgtaattaaatttgacgtatagcaaaagacttgaagaataaaacgtcaagttaaagataattttggt  17893200                             --------->ZAT6                             --------->ANAC58                                                      <-                             --------->ANAC58                                                  ------                           ---------->DOF2                           --------->ATHB12          <-----                        --------->YAB1 --------->ATHB12              -------->ATHB1            <-----                        --------->TOE2(3)                            <---------ICU4            <-----              <---------ETT(2)        <---------YAB1                 --------->YAB1            <-----      ---------->DOF2   --------->TOE1(3)   <---------YAB1          <---------ATHB12           ------   atatatgagaaaggtatcgacaaaaaccataacgctatagatgattgtgatttgacaaaaacaccctcaaatcattgttttcagagtttttttagataag  17893300                                                              <------ZmHOX2a(2)                                                             --------->AGP1                                                             --------->ARR14(2)      --------->ANAC58               ------>ZmHOX2a(2)       <---------ARR14(2)      --------->ANAC58              <------ZmHOX2a(2)        --------->ARR14(3) ------TEIL                --------->ANAC58                  --------->ARR11(3) --->MYB59                 --------->ANAC46                  <---------ARR11(3) ----TOE2(3)<---------ALFIN1       --------->ARR11(3)        <---------ARR14(3) ----------AtSPL3          --------->ANAC58     ---------->DOF2------>ZmHOX2a(2)           ---------- ----TOE1(3)--------->AtMYB61      <---------AGP1           <---------GLK1(1)       <---------ATHB12 ----------AtSPL8         --------->WOX13(1) <----------DOF2--------->GLK1(1)    <---------ALFIN1 --->DAG2  --------->MYB46(3)      <---------ARR11(3)      ----------->ARR10  --------->PCF2       <-   gtacagataagaaaccacctctaaaaatcaagcaatagatctcatcgcttaaaagaagagagagatcttcacttgtatgtgtcccactgattccaacaca  17893400                    <---------ANAC46                    <---------ANAC58                ------->MYC3                <-------MYC2                <-------PIF5                <-------MYC4                ------->PIF5                <-------MYC3                ------->MYC4               <<<<<<<<<<ABI5               --------->bZIP60(2)               <---------TGA1a               <<<<<<<<<<AtMYC2               <<<<<<<<<<HY5               <---------O2               --------->TGA1a               --------->O2               --------->ANAC55(2)               <---------ANAC55(2)                                <---------ARR11(3)      --------->ARR14(2)                                      -------->ATHB1                    -----      <---------ARR14(2)                                      <---------ICU4                  -------    --------->LBD16 <---------ANAC58                          --------->YAB1          <----------DOF2   --------->HSFB2a(2)                                        <--------HAHB4       --------->ARR11(3)   <---------HSFB2a(2)                       <-----------RAV1(1) <---------ICU4    <---------ARR11(3) ->RAV1(1)     <--------ABF1          <---------ZAT14        --------->ICU4        <---------AHL20(1) ----------HVH21------->MYC2       <------------CBF         --------->GLK1(2) --------->At5g28300<---   atgtcccagaacttgccacgtgtcgttcatttcaaaagattgcagtactgttgtccctagagaatcattatctccctcgctgtaatatctttatgctcct  17893500                --------------->AGL15               ----------------->AGL2               ----------------->AGL3               ----------------->AG    *TSS --------------->AtSPL8  <----------DOF2 ---------->DOF2  <---------DAG2<---------------AGL15 ->ZmHOX2a(1) --------->ANAC58         <------------------------ANAC81 ---->RAV1(2)------->TEIL      ------->TEIL                           <---------ANAC46 --------HVH21--------->ANAC58<-----------GT1  <<<<<<<<<TBF1<----------DOF2<-------GAMYB    <--------   gtcactttctgtctgtacccaaaagaagtaatgaacctctctcatcttcttcttctctgtttctttcatgttttgtgagttgtttctcaacaattttctg  17893600                                                                                ------>ZmHOX2a(2)                                            <---------ARR14(2)                 <------ZmHOX2a(2)                                         --------->ALFIN1                     --------->ARR14(2)                                         <------NtERF2                        <---------ARR11(3)                                       <---------ANAC58                       <---------ARR14(2)                                       <---------ANAC46                       --------->AGP1                                       <---------ANAC58                       --------->ARR11(3)                                     <---------ANAC46                         <---------AGP1      <---------ZAT6            <---------ANAC46                    ----------->GT1             <---- ---GT1       <------ZmHOX2a(1) <-----------RAV1(1)               <-----------RAV1(2) <----------DOF2   gtctcttagagtgagaggagagagatagagagttgtgttgggcgtggaacttggactagttccacatatcaggttatatagatcttctctttcaacttct  17893700                   --------->GLK1(2)                 ------>ZmHOX2a(1)                <---------MYB59                <---------------AGL15                --------------->AGL15                ========================================================================MADS_MADS               <-----------------AGL1               ----------------->AGL1                                          ----------->GT1               ----------------->AGL2                                   --------------->AGL15               ----------------->AG                                     <---------------AGL15               ==========================================================================MADS_MADS               =========================================================================MADS_MADS               <-----------------AGL3                                  <-----------------AGL3               <-----------------AGL2                                  <-----------------AGL2            <----------DOF2                                            ----------------->AGL3          --------->HSFC1(2)                 --------->ANAC55(2)       <-----------------AG        <---------GLK1(2)                   <---------LBD16            <-----------------AGL1     --------->HSFB2a(2)             <----------DOF2                   ----------------->AGL2    ----     <---------HSFB2a(2)<-----------HVH21  <-----------GT1        --------->ALFIN1               ---- -----YAB1<---------HSFC1(2)     <---------ZAT18 <----------DOF2 --------->ARR11(3)  <-----------GT1<   gattcgtccagaagctttcctaatctggtcagtagtactctttttatacgggtttttggttttataagatgtggctatatttggaaataactattttgca  17893800                                                                            --------->AHL20(1)                                                                           <---------AHL20(2)                                                                           <---------ICU4                                                                           --------->ATHB51                                                                           --------->AHL20(2)                                                                          --------->ICU4           <-                                                                       <---------YAB1            ----                                                                       --------->AHL20(2)        ----                                                                       <---------AHL20(2)        ----                                                                      --------->AHL20(2)        -----         <---------WOX13(1)                                     --------->AHL20(2)    <---------ICU4     ------>ZmHOX2a(1)             <-----------GT1            <----------DOF2        <---------ATHB12 ----->ANAC58                --------->ARR11(3)              <---------ANAC58  <---------AHL20(2)<--- ----->ANAC58                <---------ARR11(3)         ------->TEIL  <---------AHL20(2)        <---- ----------DOF2          ---------->DOF2   --------->MYB52(1)<---------ANAC58<---------YAB1   -------   agctttcctagattgccagaatataaaaaaagatgtttaacaagagaacggactcatggacttgctttaaattttaattattttaaaatcattctataat  17893900   <---------ZAT6                                                                    --------->TOE2(3)   ----------->GT1                                                                  <---------ICU4 --------YAB1                                                                       <--------HAHB4 ----->YAB1                                                                         --------->ATHB12 ---->HAHB4                                                                         --------->YAB1 ----->ATHB12                                                             <---------ICU4        <---- ---->ICU4                        <---------AHL20(2)     ------>ZmHOX2a(1)--------->YAB1        <---- ------ICU4                      --------->AHL20(2)     <---------ALFIN1 <---------ATHB12       ----- -----YAB1          <------ZmHOX2a(1)      --------->AHL20(2)   ------->TEIL       --------->ICU4 -->YAB1  --------->AHL20(2)  --------->YAB1<---------AHL20(2) <---------CCA1(2)   <---------YAB1   gattagagtaaataaactattaggactctgaattataaaattcgattttatatatgctcctccttgtatctcttaatcataagttatcattagctctgtt  17894000  Previous    Next  AGI:  At2g43010.1    Description:  PIF4 (PHYTOCHROME INTERACTING FACTOR 4); DNA binding / transcription factor. Identical to Phytochrome-interacting factor 4 (BHLH9) [Arabidopsis Thaliana] (GB:Q8W2F3;GB:Q9C5I8;GB:Q9SKX6); similar to PIL6 (PHYTOCHROME-INTERACTING FACTOR 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G59060.1); similar to phytochrome interacting factor 4 [Arabidopsis lyrata subsp. petraea] (GB:ABP96466.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 17893504    to: 17896127    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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