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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                           ------->GAMYB
                                                                                           =========
                                                                               <---------ZAT2
                                                                               <---------At4g35610<-
                                                                               --------->ZAT2  <----
                                                                               --------->At4g35610--
                                                      --------->DAG2       --------->TOE1(3)   -----
                                                     ---------->DOF2      ----------->RAV1(2) <-----
                                              --------->ARR14(2)     <-----------GT1    --------->MYB52(1)
--------->ATHB12                              <---------ARR14(2)   <-----------HVH21 ------>ZmHOX2a(2)
-------->MYB46(3)                             --------->GLK1(2) <---------At4g35610<---------ARR11(3)
-->HVH21                                --------->AtLEC2        --------->At4g35610<-----------ARR10
 
caaccattggcactgagaatgcagagacctctctgtttccttcttgcaaaatccgataaagtctcacagatgtcacaacctgagctgatctcaacggcgt  17870100
                                                                             ------->MYC3
                                                                             <-------MYC2
                                                                             <-------PIF5
                                                                             ------->MYC2
                                                                             >>>>>>>>>>AtbZIP1
                                                                             ------->MYC4
                                                                             <-------MYC4
                                                                             ------->PIF5
                                                                            --------->PIF3(3)
                                                                            <---------TGA1a
                                                                            --------->bZIP60(2)
                                          <---------ANAC46                  --------->TGA1a
                                        <---------MYB46(3)                  <---------O2
                                 -------->ATHB1                             <---------PIF3(3)
                                 --------->ATHB12                           --------->O2
                                 --------->YAB1                             <---------bZIP60(2)
                                 <--------ATHB1                             >>>>>>>>>>HY5
                                 <------------ATHB5                         <<<<<<<<<<HY5
                                 <---------ICU4                           <---------ALFIN1
                                <---------YAB1                          <----------------PIF3(2)
                                --------->ICU4                          ----------------->PIF3(1)
                    <---------TGA1a     --------->MYB55(2)          --------->ARR14(2)
         <---------ARR14(2)  ------------>ATHB5                   <---------MYB46(3)
==============================MYC_MYB<------MYB46(1)            <---------ZAT2
--------At4g35610   <---------ANAC58 <------MYB83               <---------At4g35610
-----MYB52(1)       <---------ANAC58<---------AtMYB61           <------NtERF2<-------MYC3
------->At4g35610   <---------O2<---------ATHB12  <---------MYB46(3)<---------ARR14(2)
---->DOF5.7(2)      --------->TGA1a<---------WOX13(1)         <-----------RAV1(2)                  -
------HVH21         <---------ANAC46<---------MYB46(3)       --------->ATERF1(1)            <-------
 
tagctctgagggaatttggactgtcgtgagtcacaatgattggtggtttgggtttgttcttggagccagcgggtctgccacgtggcctcttagccatctc  17870200
                                                       <---------REM1(1)
                                                     <------MYB83
                                                     <------MYB46(1)                  --------->ATHB12
                                                    <---------AtMYB61                ===============
                          <----------DOF2        <-----------RAV1(1)                 ===============
                      <---------DEAR3(1)         <---------MYB46(3)                  ------>ZmHOX2a(1)
                     --------->RAP2.6(3)       <-------GAMYB                         <---------YAB1
                     <---------ORA47(1)       --------->MYB111(2)        <---------ANAC58
                   <------MYB46(1)            <---------MYB46(3)         <---------ANAC58
                   <---------SPL7            <--------P<-----------RAV1(1)<----------DOF2
                   ----------->HVH21      <---------TOE2(2)          <-------GAMYB -----------------
                   <------MYB83           <---------TOE1(2) <---------ANAC58     <---------ARR14(2)
    <---------WOX13(1)<---------RAP2.6(2)<-----------RAV1(2)<---------ANAC58     --------->ARR14(2)
----->ZmHOX2a(1) <--------P              ====================RAV    <-----------RAV1(1)
--CCA1(2)       <---------MYB52(1)       ==========================RAV<---------MYB52(1)
 
tccttcgattgatgaaaccggttggacggctttgggtaatgctctcaggttgttgttggtgttgcctctctctgttgcttcatggttcctcattggaaca  17870300
                 <------MYB46(1)
                 <------MYB83
               <--------P
             <---------MYB46(3)       >>>>>>>>>>>>>>>>>LFY
       ------>ZmHOX2a(1)             --------->ANAC46
    <------ZmHOX2a(2)                --------->ANAC58                         <-------TEIL
   --------->ARR14(2)                --------->ANAC58                        --------->CCA1(2)
   <---------ARR14(2)          ------->TEIL                             ---------->DOF2
===========HOX2a_HOX2a     --------------->AtSPL3      ----------->GT1------->GAMYB
============HOX2a_HOX2a   --------->At4g35610      ------->TEIL     <---------At4g35610
>AGL1------>ZmHOX2a(2)    <---------At4g35610   <---------YAB1      --------->At4g35610       <-----
 
gacttggatcctacagaggttggagttagagctgtacctccagccattgttatgaatgttgttatatgttcaactgaaagattcagaaaatttgtgagga  17870400
                                  <---------AHL20(2)
                                 <---------AHL20(2)
                              <--------HAHB4
                              -------->ATHB1
                              <---------ICU4
                              --------->ATHB51
                             --------->ICU4               <--------ATHB1
                   --------->GLK1(2)                      --------->ATHB12     <-------GAMYB
                  --------->ARR11(3)                     --------->ICU4       ----------->GT1
                  <---------ARR11(3)                     <---------YAB1       <---------MYB46(3)
                ----------->ARR10--------->AHL20(2)---------->DOF2       <------ZmHOX2a(1)         -
-ZmHOX2a(1)    <------ZmHOX2a(1)<---------YAB1   --------->AtMYB61 <------ZmHOX2a(1)   <-----------HVH21
 
gtttgtgagtttaagtaaggagattttggtgaattattaaatggtagagacaccaaaagaatgattgtgaggagtaggagatggttaagttgtcaccaaa  17870500
                                   <----------ID1
                                   ----------->GT1
                                 ---------->DOF2            --------->At4g35610
                     <---------AHL20(2)                     <---------At4g35610                    <
                     --------->AHL20(2)                     <------NtERF2                <---------AHL20(2)
      --------->YAB1<---------AHL20(2)                 <---------HSFB2a(2)         <---------ANAC55(2)
    <---------YAB1  --------->AHL20(1)                 --------->HSFB2a(2)    --------->ATHB12    --
    <---------WOX13(1)          *TSS                --------->GLK1(2)        <---------YAB1   ------
 <---------YAB1     <---------AHL20(1)         ---------->DOF2           --------->MYB46(3)  <------
---------->GT1      --------->AHL20(2)    ---------->DOF2   <---------ATERF1(1)    --------->ANAC55(2)
 
aattgtgattaatagttaacaaatttattttgcaaaaaaagaaaaaaaagaaaagtttctggcagcctacttctcaacagatgattaagtatttgattca  17870600
                                                                           <----------DOF2
                                                                         --------------->AGL15
                                                                         ----------------->AGL1
                                                                         <---------------AGL15
                                                                        <-----------------AG
                                                                        <-----------------AGL1
                                 --------->ICU4                         ----------------->AGL1
                                 <---------YAB1                         <-----------------AGL3
                               -------->HAHB4                           ----------------->AGL2
                               <---------ICU4                         <-----------GT1
                               --------->YAB1                     --------->AHL20(2)
 <------------CBF             --------->ICU4                    ------>MYB83
---------YAB1               --------->YAB1                      ------>MYB46(1)
---------->CBF             <---------YAB1               <-----------GT1 <-----------------AGL2
--->YAB1                <-------TEIL      <---------ARR11(3)  ------->GAMYB<---------DAG2        ---
-TEIL     <----------DOF2--------->YAB1   --------->ARR11(3)  <---------MYB59        --------->AtMYB61
 
tgacaattgtcttctttaacagagagattcataataatgcttaaacatcttgtagctatttacaaccaaatttataccctttttgggaccaaaactaaaa  17870700
                                                            ---------->ID1
                                               --------->ZAT14
                                               <---------ZAT14
                                            <---------At4g35610                              <------
                       ----------->RAV1(1) <---------ALFIN1<-----------GT1                  --------
        ------>ZmHOX2a(2)                 --------->ZAT18 <-----------GT1                <----------DOF2
------>AHL20(2)       <----------ID1      <---------ZAT14<---------AHL20(2)     <---------YAB1 <----
 
tcaaatactgatcgagagttgagaaacaacaaaaaatgagagtcgtccactgctctgtattttatcgccttccatactcgactcttattgggcttttaaa  17870800
                                                      <---------DEAR3(2)
                                                      <------MYB83
                                                      <---------MYB46(3)
                                                      <------MYB46(1)
                                                     <---------AtMYB61
                                                   <-------GAMYB
                                                  --------->MYB55(2)
                                                  <---------MYB46(3)
                                                 --------->ALFIN1
                                                 <---------AtMYB61
                                               --------->ALFIN1
                                              <-------MYC2
                                              ------->MYC4
                                              ------->MYC3
                                              <-------MYC4
                                              <-------MYC3
                                              ------->MYC2
                                             --------->O2                       ----------->HVH21
                                             ==============MYC_MYB             ------>ZmHOX2a(1)
                                             --------->TGA1a               <---------SPL7
                                             <---------O2                 <---------ANAC58
                                             <---------TGA1a              <---------ANAC58        <-
                                             --------->ANAC55(2)     <---------ANAC58             <-
                                             ================MYC_MYB <---------ANAC58          *TSS
   ------>ZmHOX2a(1)===================================bZIP_DOF    >>>>>>>>>WRKY18 =================
---AHL20(2)         ---------->DOF2        <------------OsbHLH66   <---------WRKY18(1)         <----
->AHL20(2)         <---------ATHB12<---------AHL20(2)--------->MYB111(1) ---------->ID1   ----------
--------CBF    ------------>CBF  <---------ANAC55(2)<--------P    ----------->HVH21----------->RAV1(2)
 
ttggtcctacagagaaggtccaataaggcccaaaatatgtaaatgtacacgtgtggttggttcttagccttgacttgtcgtcctcgacctgtgccacatt  17870900
                                                                           <-------GAMYB
                                                                          <---------MYB46(3)
                                                                          --------->MYB111(2)
                                                                          --------->MYB55(2)
                                                                       --------->HSFB2a(1)
                                                                       <------MYB46(1)
                                                                       <------MYB83
                                                                       --------->HSFC1(2)
                                                                       <---------HSFC1(2)
                                                                       ------------>MYB.PH3(2)
                                                                 --------->LBD16
                                                                 <---------LBD16
                                                                <---------HSFB2a(2)
                                                                <---------ANAC46
                                                               <---------LBD16
                                                             --------->ARR11(3)
                                                      <---------LBD16  <---------HSFB2a(1)
                                                     <---------LBD16  <---------AtMYB61
--------At4g35610                            ----------->GT1 <---------ARR14(2)
--------CCA1(2)                            --------->ZAT14   --------->ARR14(2)           <---------
==RAV                                --------->ARR14(2)    --------->HSFB2a(1) <---------ANAC46
---TEIL                              <---------ARR14(2)    ----------->ARR10   <---------ANAC58<----
->RAV1(1)                   <----------DOF2<---------ZAT14 <---------HSFB2a(1) <---------ANAC58<----
 
catctctctctctcagtcaaattgttgttttctttcttcgaatcggtgcagaaaattcagggaagttctggggaaggttgttgcgtttgactcctttggc  17871000
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AGI:  At2g42940.1   
Description:  DNA-binding family protein. similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G45430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70015.1); contains InterPro domain Predicted AT-hook DNA-binding (InterPro:IPR014476); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637); contains InterPro domain Protein of unknown function DUF296 (InterPro:IPR005175)
Range:  from: 17869331    to: 17870533    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g42950.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29820.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29820.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66903.1)
Range:  from: 17870896    to: 17873564    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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