Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <------ZmHOX2a(2)      --------->AGP1     --------->At4g35610     <---------At4g35610           <---------WOX13(1)  <---------MYB52(1)             --------->ATHB12 <-----------TGA1               <---------YAB1 <-----------HVH21           <----------DOF2                                            ----------->GT1 -------->DEAR3(1)           <---------DAG2                                             --------->At4g35610 -------->DREB2C(2)       <---------ALFIN1                         <-----------GT1   <---------At4g35610 ------ALFIN1           ----------->RAV1(1)                ---------->DOF2<-----------GT1   caccgtcagatcaacattcaatttcgcaacacttttcattgattccaccatttctgtgaaaaaaagaattcacatttttcaatacccatctgctaaaaat  17740600                              <---------ARR14(2)               --------->ATHB12                              --------->ARR14(2)            --------->MYB52(1)                             <---------HSFC1(2)             ------>MYB46(1)                             <---------HSFB2a(1)            ------>MYB83                             --------->HSFB2a(1)          --------->AtMYB61            ---------->DOF2                  <---------ANAC58                      >>>>>>>>>>MYB80          --------->YAB1                  <---------ANAC58                  <---------ATHB12        <---------------------WRI1         ------->TEIL        --------->HSFC1(2)   --------->WOX13(1)        --------->SPL7  ---------   <----------DOF2--------->TOE2(3)    --------->YAB1--------->YAB1        <---------MYB52(1) -------   caagacttttgaatctaattccttgataagaagttccccattcgtaaactctcaatcaaaccaaacgattgaaacccgttcgatgatatcaaagtccagt  17740700                                                                                --------->YAB1                                                                             --------->TOE1(3)                                                                         ------>ZmHOX2a(1)                                                                        <---------ANAC58                                                                    <---------ARR14(2)                                                                    <---------GLK1(2)                                                                    --------->KAN4(2)                                                                   <---------HSFC1(2)                                                                   --------->HSFB2a(1)     <---------ZAT2                                                                   <---------HSFB2a(1)     --------->At4g35610                                 ---------->DOF2                   --------->HSFC1(2)      <---------At4g35610                <---------At4g35610                           >>>>>>>>>TBF1  --------->TOE2(3) >ZAT18         --------->At4g35610  <---------ARR11(3)    >>>>>>>>>TBF1<---------ANAC58   --------->ZAT2 ---->GT1 --------->GLK1(1)   --------->YAB1            >>>>>>>>>TBF1--------->GLK1(2)------->GAMYB   aaaatcaaacagaaatcgagctcaagaagctatcaaaaagacctgattcgagtgagaagaagaagaagaagattccttaccttcataacgctcagcttgc  17740800                                         --------->LBD16            <---------HSFB2a(2)                                        --------->HSFB2a(2)         --------->HSFB2a(2)                                        <---------HSFB2a(2)      --------->GLK1(2)                              --------->ANAC58                  <---------ARR14(2)                     ---------->DOF2    --------->HSFC1(1)      <---------GLK1(2)                   --------->ANAC58     <---------HSFC1(1)      <---------ARR11(3)                   --------->ANAC58    <---------LBD16          --------->ARR14(2)                   --------->ANAC46<----------DOF2     <---------GLK1(2)       ---------->DOF2    --------->At4g35610       --------->ANAC58      <---------WOX13(1)       --------->YAB1        <-    <---------At4g35610   <-----------HVH21      ----------->HVH21  <---------HSFC1(1)        -------   tcagagagcttagcgaggtagacgaaagtgtcacgctcttttccagaacccatgactgattttcaagattctcgaaaaatcaaaagtatcaaattccaaa  17740900                                                                                           <---------ANAC46                         --------->ARR11(3)                                       <----------DOF2                         <---------ARR11(3)                                     <------ZmHOX2a(2)                        <---------CCA1(2)                                      --------->AGP1 -------                       ------->TEIL         <------------------------ANAC81    --------->ARR11(3)             ------>ZmHOX2a(2)       --------->SPL7                            <---------ARR11(3)           --------->ARR14(2)      <---------SPL7         <---------AHL20(2)  <---------GLK1(1) ---------DOF2 --------->LBD16   <------NtERF2<----------DOF2     --------->LBD16------>ZmHOX2a(2) --->DOF2  <---------ARR14(2)  <---------DEAR3(1)    <---------AHL20(2)       --------->GLK1(1)   gcttttgacgactgatccgagtatgtatatctctcggcgaacgctgttcttttgttttattttttctccagagaagagagagatctttgagacgcgcgta  17741000                                                                                             <-------                                                                                           <---------TOE1(2)                                                                                        --------->O2                                                                                        <---------O2                                                                                <---------YAB1<------                                                                                <---------AHL20(2)                                                                             <---------AHL20(1)    <-                    ----------->GT1                                          --------->AHL20(1) -----                   --------->LBD16                                           <---------AHL20(2) <----                 <---------LBD16    <-----------GT1                          --------->AHL20(2)<-----              ---------->DOF2       <---------ICU4                          --------->AHL20(2)-------       --------->YAB1<-------GAMYB --------->ICU4                        <---------ICU4==============       ----------->GT1         --------->At5g28300                  <---------AHL20(2) ------>ZmHOX2a(1) -->REM1(2) <---------MYB52(2)----------->GT1*TSS     <-----------HVH21  --------->YAB1==============   gggacacaagcgtaattaacgcgggttaaacggggtaattactactcaatggtctgtgtcagtaagtgattttattcattatattattcctcgtgggatc  17741100  <------MYB46(1)                                                    <---------------AtSPL8  <------MYB83                                                    <---------YAB1 --PCF2                                                          <---------AHL20(2) ---ARR14(2)                                                <---------ATHB12 --------MYB52(1)                  <---------bZIP60(1)  --------->ZAT18 ->ZmHOX2a(2)                      --------->bZIP60(1)  <---------ZAT18       <---------ARR11(3) ---TEIL                         <-----------HVH21      --------->ZAT14    <----------DOF2 -ZmHOX2a(2)                  <---------bZIP60(2)       <---------ZAT14    <---------DAG2      <----- -->ARR14(2)             --------->YAB1          --------->ANAC46--------->AHL20(2)    <---------At4g35610 =HOX2a_HOX2a         <---------CCA1(2)         --------->MYB46(3)<---------AHL20(2)   --------->At4g35610 ==HOX2a_HOX2a   <-----------GT1--------->bZIP60(2) <---------ALFIN1 --------------->AtSPL8   -------   catttggttcttctctgtctaaccatatcatgacatgtcatcactctctatccaccagtccactcattttaattgtactttatcttctcagcacaatttt  17741200           <---------ATHB51           <---------ATHB12                                                                <---------AHL20(2)  <---------AHL20(2)                          --------->ATHB12                            <---------AHL20(2)  --------->AHL20(2)       --------->TOE2(3) <---------YAB1     <------ZmHOX2a(1)         --------->AHL20(2) ----AHL20(2)           <-----------GT1    --------->YAB1     <---------TOE2(3)         ------->TEIL -->AHL20(2)--------->MYB52(1)         <---------AHL20(2)    --------->MYB52(1)  --------->AHL20(2)   atattttattcaaataatggactatataacattagaaggaattaatcttcattagggaataactaaggaactgtttttccaaaaaaaatgaatttaatga  17741300                                                                                         --------->YAB1                                                                              --------->AHL20(1)                                                                              <---------AHL20(1)                    <---------ANAC58                         --------->AHL20(2)          ----------->GT1                    <---------ANAC46                         <---------AHL20(2)     <---------YAB1                    <---------ANAC58        <---------AHL20(2)             --------->AHL20(2)   catacctattttgtccaaattttcgtgtttaaaatttagagtttattttttggatttaagtgtttaatttttggagtttatatattacgaatggtaattt  17741400                                                           <---------ARR11(3)                                                           --------->ARR11(3)                                                           --------->ARR11(1)                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                        ------>ZmHOX2a(1)                                                        <---------------AGL15                                                        --------------->AGL15                                                       <-----------------AGL1                                                       <-----------------AG                                                       <-----------------AGL3                                                       ----------------->AGL3                                                       <-----------------AGL2                       -                                                <---------ARR11(3)                                 <-                                      <----------DOF2  ----------------->AGL2                    ----                      <---------GLK1(1)         --------->AHL20(1)                              -----                      --------->GLK1(1)         --------->AHL20(2)                           --------             ---------->DOF2  <---------ANAC58  --------->ARR11(3)                           <-------          --------->ANAC58    <---------ANAC58  <---------AHL20(1)                         --------->ANAC58          --------->ANAC58<----------DOF2       <---------AHL20(2)  --------->YAB1         --------->ANAC58 --------->ARR11(3)  <---------ARR11(3)  --------->HSFB2a(2)   ----------->GT1             --------->ANAC46 <---------ARR11(3)  --------->ARR11(3)  <---------HSFB2a(2)--------->CCA1(2)          --------->ZAT6   caacatcttagaacgaaaagaaagatttcttttcttgtttctttcagaaatatatttcctagatatggtaacataacaacaatagaataacacaagaaat  17741500  Previous    Next  AGI:  At2g42590.1    Description:  GRF9 (GENERAL REGULATORY FACTOR 9); protein phosphorylated amino acid binding. Identical to 14-3-3-like protein GF14 mu (GRF9) [Arabidopsis Thaliana] (GB:Q96299;GB:O80367); similar to GRF12 (GENERAL REGULATORY FACTOR 12), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G26480.1); similar to 14-3-3-like protein B (VFA-1433B) (GB:P42654); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) Range:  from: 17738933    to: 17741045    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g42600.1    Description:  ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2); phosphoenolpyruvate carboxylase. Identical to Phosphoenolpyruvate carboxylase 2 (PPC2) [Arabidopsis Thaliana] (GB:Q5GM68;GB:Q8GVE9;GB:Q9SIN0); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.1); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.2); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.3); similar to phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum] (GB:AA Range:  from: 17741402    to: 17746162    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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