Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ---------->DOF2                                   <------MYB46(1)                                   <------MYB83                              <---------YAB1              --------->ZAT2<---------GLK1(1)              <---------ZAT2--------->GLK1(1)                                                       <              <---------At4g35610 --------->MYB46(2)                                                -              --------->At4g35610 <---------MYB46(3)                                                <           ---------->DOF2 <---------ARR14(2)                                                     ---       --------->GLK1(1)   --------->ARR14(2)                                                   -----  <---------LBD16    --------->DAG2<---------ANAC46                                         <-------TEIL -------->HVH21     ---------->DOF2----------->GT1                                       <---------ANAC46   gtgacacgggtatcaaagctgagaaagcggatatgtttggtgaaaaggagagcggtttagagagtagcgactgcaaatgggtagtagcattatgtgcatc  17711500              --------->ARR14(2)              <---------ARR14(2)           <---------HSFB2a(2)           --------->HSFB2a(2)                                                    <------MYB46(1)          <---------LBD16                                               <-------GAMYB         ------>ZmHOX2a(1)                                            <---------TOE1(2)     --------->ANAC58                                              <---------ANAC58     --------->ANAC58                                         <-----------ARR10   <------MYB83 ---------ZAT18                                            <---------ANAC58     <--------P -------->ZAT14              <---------ANAC58           --------->ZAT18<---------ANAC58 ---------ZAT14 <---------At4g35610                    --------->ALFIN1<---------ANAC58      -------- ------>At4g35610 <---------YAB1         --------->ARR11(3)<---------ANAC58  <---------TOE2(3) ---->ATHB12--------->LBD16  <---------ANAC58      ---------->DOF2 <---------ANAC58          <-------   agtggacactcctccggatgctgatactagtgcttgtctcagagctcttgtgagaaagtgtgcgagtcttcgtgcgttagaggttggagtcttggagatg  17711600          <---------ICU4         <---------YAB1         --------->ICU4       <--------HAHB4       <---------ICU4                       <---------RVE1(1)       --------->YAB1                       <---------CCA1(1)      <---------YAB1                       --------->ARR11(3)      --------->ICU4                       <---------ARR11(3)     <-----------------AGL1    --------->AtMYB61                                                  <-- ->At4g35610      --------->ARR14(2)       --------->ARR14(2)                                    ---- --At4g35610      <---------ARR14(2)       <---------ARR14(2)       <------ZmHOX2a(1)     --------->AHL20(2)   aacaagttatcattatggcaaatatgctcatcaccatcgcaggcagatattttggccaaatggaatgagaggagaagtgtgtttacaacagtttaaattt  17711700                                           <---------RAP2.6(3)                                           <---------DDF1                                           ----------->RAV1(1)                                           ------>NtERF2                                          --------->RAP2.3(3)                                          --------->DREB2C(2)                                          <---------ETT(1)                                          --------->DEAR3(1)                                          --------->DEAR4(1)                  --------->ANAC58                                          --------->At1g77200                 --------->ANAC55(2)                                         --------->RAP2.3(1)                  --------->ANAC46                                         <------NtERF2--------->HSFB2a(2)     <---------ANAC55(2)      --------->AHL20(2)                 --------->ATERF1(1)                  --------->ANAC58    --------->TOE2(3)                    --------->ERF1                       --------->ANAC55(1)  <-------TEIL                          <---------ATERF1(1)                 <---------ALFIN1 -------AHL20(2)   ---------->DOF2     <---------DEAR3(1)               --------->DEAR3(2)--------->ATHB12 ----->AHL20(2)---------->DOF2----------->RAV1(1)     <---------HSFB2a(2) <-----------HVH21 <--------   taaattcattaaaaactaaaagaaagagagttcaacataagtcgccgacatacaatccagaacgagaaaactaaaccgacacgcaagttgaaagattgat  17711800                                                           --------->ARR11(3)                                                   --------->AHL20(2)                                                   <---------AHL20(2)                                                <---------ICU4                                               --------->AHL20(2)                                               <---------AHL20(2)                                               --------->ICU4                                               <---------ATHB51                                              <---------AHL20(1)          <----------DOF2       --------->ANAC58                ----------->GT1     <---------ARR11(3)       --------->ANAC58               --------->DAG2      --------->CCA1(1)      --------->SPL7                 ---------->DOF2      --------->RVE1(1)                        -- -WOX13(1)                    <----------ID1  --------->AHL20(2) <---------ETT(2)   <------------CBF   gaaaacgggacgcaatctggtttgataagagaagaacaaaaaagtcaaaataattaaaaaatatctctcgacctctcttttctctctattgattctatcg  17711900                                                                                               <-----                                                                                               <-----             <---------ANAC58                                                                  <-----             <---------ANAC58                                      <---------MYB52(1)          ------           ------->TEIL                                           <-------GAMYB                <-----           --------->ARR11(3)        ----------->GT1              ===================================          *TSS                      --------->DAG2       <---------TOE2(3)                     <-----          <---------CCA1(2)       ---------->DOF2        <---------TOE1(3)                     ------ -------->CDC5            --------->ANAC46   ---------->DOF2   <---------At5g28300             <-----   ctctgcgcatttgtatcttgctctgtctccgataccaaaaggtaattcaaaggaattttagggtttaccgttgatttcttcgattcgattttttgggacg  17712000       <---------ARR14(2)       <---------GLK1(2)      <------ZmHOX2a(1)    <---------TOE2(3) ----TGA1a                                <---------HSFB2a(2) ----O2--------->ARR14(2)                 --------->HSFB2a(2) ----ANAC46                         --------->ATHB12          <---------At4g35610 --->TGA1a                      --------->ATHB12         <---------ZAT6 ----ANAC58                  <---------At4g35610        <---------TOE1(3) <-----------RAV1(1) ====MYC_MYB             --------->ARR14(2)     <---------REM1(1)       <----------DOF2 ----bZIP60(2)           <---------ARR14(2)   <---------At4g35610     =============================== --->ANAC55(2)     <---------LBD16<---------WOX13(1)<---------STY1(2) <---------------AGL15 ----ANAC58   <---------CCA1(2)<---------YAB1 --------->At4g35610     --------------->AGL15   tgttttgaggattcttctatctctgggtttacgctgattgatttcgagagctgtagctagggttatctgctactctttgttgcaaattttgtttttgtta  17712100                                        <-------GAMYB                                       <-----------RAV1(1)                                    --------->GLK1(2)                               <---------ANAC46                               <---------ANAC55(1)                               <---------ANAC55(2)                               <---------ANAC58       <---------TOE2(3)       --------->ANAC55(2) <----------DOF2               <---------AtLEC2 <---------------AGL15         <---------ANAC58       ----------->GT1                               < <---------DAG2     <------------------------ANAC81 <---------ANAC58                     --------->LBD16 ================MADS_MADS <----------DOF2          <---------ANAC58      --------->AHL20(2)    <----   ttcctttttgaggtgaacattgttcttctctttgcgtgattctgttggcatttgtcttgttatattcttcgtttgattatatgctcttctccgaagactg  17712200                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                 ----                                                                                                 ----                                                                           --------->ZAT2     <------                                                                           <---------ZAT2     <------                                                                         ------>ZmHOX2a(1) <---------ARR14(2)                                                                  <---------ARR11(3)       --------->ARR14(2)                                                                  --------->ARR11(3)      --------->GLK1(1)                                                               <---------TOE2(3)          <---------GLK1(1)                          --------->YAB1                      ---------->DOF2  <---------ANAC46  <---          --------->MYB59<---------YAB1    <---------YAB1    --------->AHL20(2)<---------ANAC58<----- ----------DOF2        --------->YAB1<---------TOE1(3)       <---------AHL20(2)<---------ANAC58------ -----ZAT14    <---------DEAR3(2)    <---------TOE2(3)  <---------MYB52(1) <---------At4g35610<------   gacttttgttattcggtcgattcgattatgatgttttttgaggttttgatagggcttcgttatttaaagatgttcctagctgcttgctattgatatccgt  17712300 --------ANAC46 --------ANAC58 --------ANAC58 ----->REM1(2) ----->ZAT14                                                                                     <--- ---ANAC58                                                                                     >>>>>> ---ANAC46                             <---------TOE1(2)                           <----------DOF2 ------ZAT14                           --------->LBD16                         <------ZmHOX2a(1)<---- ----LBD16                        <----------DOF2                      --------->MYB52(1)    <------- --->LBD16                     <-----------GT1                         ---------->DOF2    --------->GLK1(2) ---ANAC58                  ----------->GT1                   <---------YAB1 --------->ALFIN1<-------   ggagtgctattgttctaactgaaacccatcttgtaactttccaggtttttgtattctattgaagattataaactaaagggaggagctttgagaatttgat  17712400  Previous    Next  AGI:  At2g42510.1    Description:  spliceosome protein-related. similar to spliceosome protein-related [Arabidopsis thaliana] (TAIR:AT1G54380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67777.1); contains InterPro domain Survival motor neuron interacting protein 1; (InterPro:IPR007022) Range:  from: 17708740    to: 17711696    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g42520.1    Description:  DEAD box RNA helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 37 (RH37) [Arabidopsis Thaliana] (GB:Q84W89;GB:Q9SIN6); similar to DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] (TAIR:AT3G58510.1); similar to DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] (TAIR:AT3G58510.2); similar to DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] (TAIR:AT3G58510.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN78578.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22046.1); similar to hypothetical protein OsJ_012456 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28973. Range:  from: 17711910    to: 17716025    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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