Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->YAB1               --------->ARR14(2)               ------->TEIL      --------->ARR11(3)                                                           <-----------GT1      <---------ARR11(3)<---------ALFIN1                                        ----------->GT1 ---->AtLEC2   <---------ARR14(2)                                             ---------->DOF2 ---ANAC58    <---------CCA1(2)                       <-----------GT1      ------>ZmHOX2a(1) ---ANAC58<---------At4g35610              ---------->DOF2               ----------->RAV1(2) ---ANAC46--------->At4g35610           --------->ANAC46              <---------At4g35610   gcacagtagttcttctgaatcttcatccacttgaaaacattcacacaaagctcaatacaccctcttctactaagctcctgcaaagttacaaaattcaaaa  17413800                                                                                                    <                                                                                                -----                                                                                                <----                                                                                               ------                                                                       --------->LBD16         ------                                     --------->YAB1                   --------->LBD16          ------                                    <---------ATHB12                 <---------LBD16          -------                                   ------>MYB46(1)                  <---------LBD16           -------                                   ------>MYB83                    --------->MYB52(1)     --------->DEAR3(2)                                  --------->WOX13(1)              --------->ARR14(2)     --------->MYB52(1)           ---------->DOF2    <-----------GT1                     <---------ARR14(2)    --------->MYB52(1)   <---------ATHB12         --------->YAB1         <-------TEIL ----------->ARR10  ------>ZmHOX2a(1)<   ctccaataagttcaaaagagcatcagtgaataataccaatcgaaatcgagacatacataccctgataagaaccgggaaattcttcctagcaaaccggccg  17413900                                                                        --------->ANAC58   <------ZmHOX2a(1)                                               <---------ARR14(2) --------->LBD16                                                   --------->ARR14(2) ---------LBD16                                               ------->GAMYB ->NtERF2                                                     --------->TOE2(2) -----ATERF1(1)                                               --------->TOE1(2)     <---------HSFB2a(2) --->RAP2.6(2)                                               --------->MYB46(3)     --------->HSFB2a(2) --->DEAR3(1)                              <-----------------------TaNAC69(2)    ------>ZmHOX2a(1) ----->HVH21 --------->ANAC46     --------->ATHB12         <---------ALFIN1   <---------ATHB12 -->SPL7     --------->ANAC58    --------->MYB46(3)    <---------ZAT18  --------->ANAC46 -->DEAR3(2) --------->ANAC58    <---------ATHB12      <---------ETT(2) --------->ANAC58      <------ -----------RAV1(2)            --------->MYB52(1)   <---------DEAR3(2)<---------ALFIN1      <--------   acccaggaattaagaacgccatcaacttcttcccaacgattgagagccataagccggtccacaacctccgatacactccaatccttctgaaaccggtcgt  17414000                     <---------LBD16            --------->DEAR3(1)                 --------->O2                  <------NtERF2                 <---------O2                 <------NtERF2        --------->ARR14(2)                    ------>NtERF2        <---------ARR14(2)                    --------->LBD16    <-----------------AG                   --------->ATERF1(1)    ----------------->AG               ------>ZmHOX2a(1)                                            <    <-----------------AGL1           ----------->RAV1(2) -------->ZAP1                              -    ----------------->AGL1      <---------At4g35610    <---------WRKY18(1)             <---------ZAT14  -------->P   <---------DOF5.7(2)<----------DOF2     --------->WRKY38(1)              --------->ZAT14 ---MYB46(3) --------->DOF5.7(2)--------->At4g35610   --------->WRKY12     <---------ALFIN1        <- -MYB52(1) --------->MYB59---------->TaMYB80--------->ZAT18   <---------ARR11(3)       --------->ZAT18   tctcaacccgaattcggtaacgtctcggaatatcagctttcctgagcccgccgatgttgaccgagacctcatgctcaccacggtcgtagttcacagacac  17414100                                                                ------>NtERF2                                                               <---------RAP2.6(2)                                                               <---------RAP2.3(2)                                                               <---------LBD16                                                              <---------LBD16                                                            --------->GLK1(2)                                                           --------->ARR14(2)                                                           <---------GLK1(2)                                                           <---------ARR14(2)                      --------->ATERF1(1)                 <---------HSFB2a(1)                      <------NtERF2                 <------NtERF2<---------LBD16                    <---------DEAR3(1)              <---------ANAC46          --------->LBD16                          <---------LBD16<---------ANAC46          ------>ZmHOX2a(1)                        ------>NtERF2--------->LBD16          <---------HSFB2a(2)                     --------->DEAR3(1)   ----------->HVH21          --------->HSFB2a(2)                     <---------ANAC46<---------DEAR3(1)         <---------LBD16                   <----------DOF2--------->HSFC1(2)        ----------->RAV1(2)               <---------ANAC58<---------HSFC1(2)        <---------LBD16                   <---------ANAC58--------->HSFB2a(1) ---------GLK1(1) <-----------HVH21    ------>ZmHOX2a(1) ----------->ARR10<---------ANAC58   ------->GAMYB -------->GLK1(1)<---------ANAC58    ----------->RAV1(2) <---------KAN4(2)<---------ANAC58<---------DOF5.7(2) --------GLK1(2) <---------ANAC58 <---------At4g35610--------->LBD16<------NtERF2         --------->MYB52(1)   agatttcttctcctggaatgcgtcggaggccttcgtagctcctggcttatcggcgcgggaagattccggcggagtgacgagcttgaaattggtaacggta  17414200                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                       <-----------ARR10                                                                       ------->TEIL                                                                       <---------AGP1<---------ARR14(2)                                                                       --------->ARR14(2)                                                                       <---------ARR14(2)                                                                       --------->ARR11(3)                                                                       <---------ARR11(3)                                                                      <---------CCA1(2)                                   <---------MYB46(3)               --------->ANAC55(2)   <---------ARR14(2)                                   ----------->GT1                  <---------ANAC55(2)   --------->ARR14(2)                                <---------ANAC46                   <---------LBD16<---------ALFIN1                        <---------HSFB2a(1)                      --------->ARR14(2)  --------->ARR14(2)                        --------->HSFB2a(1)   =================================HOX2a_HOX2a<---------MYB52(1)             *TSS    <------ZmHOX2a(1)        <------ZmHOX2a(1)  <---------ARR14(2) <---------CCA1(2)           --------->MYB52(1)  <---------DEAR3(1)               <------NtERF2    <------NtERF2      -    <---------At5g28300 <---------HSFC1(2)    ==================================HOX2a_HOX2a         - --------->AtLEC2  <---------TOE2(3)    ---------->DOF2      <---------LBD16   --------->PCF2     <--   gccattcacagccaaacgagtaaggaaggctcttcggtggataaaagaggataacattactctcgcggctacggatcttaggccccatatccgatatgtt  17414300           ------------>CBF        <---------YAB1                                             ----------->GT1      <---------ICU4                                  --------->AHL20(2)     --------->ICU4                                   <---------AHL20(2) <---------AHL20(2) ----------------->AGL1                              <---------AHL20(2)  --------->AHL20(2) <-----------------AGL1                        <----------DOF2   --------->ZAT14                <---- ----->NtERF2                            --------->YAB1      <---------TOE2(3)            ---------->DOF2 --------->ID1                       --------->HSFB2a(2)    ---------->DOF2            --------->TOE2(3) -------RAP2.6(2)                    <---------HSFB2a(2)  <---------AHL20(2)        ----------->RAV1(1)   tcggcccattatggtcaatttgtaaactaacttgattttctaaaaataacttttatttattttaaagtatagtaaataaatactaacaacataaaagact  17414400                                           <---------ANAC58                                           <---------ANAC58          ------>ZmHOX2a(1)                                           <---------ANAC46         <---------ANAC58                                 <---------ANAC46                   <---------ANAC58                                 <---------ANAC58          ----------->GT1  ------->GAMYB  ---------- ------DOF2<-------TEIL          <---------ANAC58       ------------>MYB.PH3(2)   <----------DOF2   ttgtttcgataaatgcataaaaaacaagagaaattccttgaattggggtgagaacatgagtttgttaattccttacaatcgcctctttgaagaagggaaa  17414500                                                           <---------ICU4                                                          --------->ICU4                                                     <---------ICU4                                                     --------->YAB1                                                    --------->ICU4                   --------->ICU4           <-------TEIL--------->YAB1                 --------->bZIP60(1)        ------>ZmHOX2a(2)                 <---------bZIP60(1)       <------ZmHOX2a(2)                                       --              ----------->HVH21           <---------ARR14(2)                                      ---        --------->ANAC58     <---------AHL20(2)     <---------ATHB12                             ----        --------->ANAC58   --------->AHL20(2)   --------->MYB46(3)         <---------YAB1      <-----   ----------->HVH21 <---------ARR11(3)   --------->ARR14(2)             --------->bZIP60(1)  ------- ->GT1<---------ANAC46<---------YAB1      ------->TEIL <---------YAB1    <---------bZIP60(1)  <------   ttgaagtgacgagcaaatgacatgatcatatatatatgcttatggatccatccaatgatgataatgaagaagatgatgtgattaagttgtcttgaagatc  17414600                                                         --------->HSFB2a(2)                                                         <---------HSFB2a(2)                                                      ------>ZmHOX2a(1)                             -                                                    --------->HSFC1(2)                              -      --------->AHL20(1)                            <---------HSFB2a(1)                             -      <---------AHL20(1)                            ------>ZmHOX2a(2)                     --------->MYB52(1)      --------->ARR11(3)                            <---------HSFC1(2)              XXXXXXXXXXXXXXXXX    --------->AHL20(1)                             <------ZmHOX2a(2)              <-----------GT1   -    <---------ARR11(3)                            --------->ARR11(3)            ------->TEIL---------    <---------AHL20(1)                <<<<<<<<<<<<<<<<<LFY                   <---------ANAC58       - ------->MYB46(3)          <-------TEIL           <---------ARR11(3)         --------->ANAC55(2)   -- ----->P                <---------MYB46(3)        <---------ARR14(2)         <---------ANAC55(2)  <-- ----->WOX13(1)         ----------->GT1         ----------->ARR10            --------->ANAC58     <-- -ZmHOX2a(2)    <---------LBD16       --------->YAB1--------->HSFB2a(1)      <---------ANAC58     --- -->ARR11(3)  <---------ARR14(2)   --------->YAB1 --------->ARR14(2)         --------->ANAC58     <-- ---ARR11(3)  --------->ARR14(2)   <---------ICU4<------ZmHOX2a(1)      <---------------AtSPL3    <--   aaccaatatatattggtatctggagatggttcatcaaaaatgacaatgggaggatccttctcgaggtttatcagacagtacgtatcaccatctaacagta  17414700  Previous    Next  AGI:  At2g41720.1    Description:  EMB2654 (EMBRYO DEFECTIVE 2654). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os07g0213300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23597.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 17410724    to: 17414213    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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