Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------YAB1                                                                     <----------DOF2                                                                 --------->ANAC58                                                                 --------->ANAC58                 <--                                                             <---------MYB52(2)                <-----                                                            --------->ANAC46              <---------LBD16                                                            --------->ANAC55(1)         <---------SPL7                      <---------ANAC58                      --------->ANAC55(2)      <---------------                      <---------ANAC58                      --------->ANAC58        =================                      <---------ANAC46                      <---------ANAC55(2)     <----------DOF2                --------->DAG2    --------->ALFIN1          --------->ANAC58 ---------->DOF2  -------        --------->AHL20(2)     --------->DAG2    --------->YAB1<-----------GT1--------->DAG2  <------ -------TEIL   ---------->DOF2---------->DOF2   <---------YAB1 --------->MYB52(1)   ------>ZmHOX2a(1)   agttcatgaattaaaaaaaaagtttcgtatgcaaaagtgtggattagactatgaaaaaaaacaagtaacgcctttctgataaagtccttttgtacggatc  17343900                                     <---------YAB1                                --------->YAB1                               <---------ATHB12 -------YAB1                   --------->MYB46(3) -ZmHOX2a(2)                <---------WRKY38(1)                 <----------DOF2 ---SPL14                  --------->WRKY18(1)               <-----------GT1 =HOX2a_HOX2a             <-----------HVH21                 <-----------GT1    <---------ATHB12 <---- -->ARR14(2)     --------->TOE1(3)--------->ICU4       ----------->GT1    --------->YAB1   --------->HSFB2a(2) ---ARR14(2) ---------->DOF2<---------WRKY12          --------->DAG2 --------->ANAC55(2)   <---------HSFB2a(2)   atcaatggcagaaaaaaaagcttaacagggtcaaccattatcaattccttcttcaaaaggttttaacttttaagtatcacaatgaataattttctataaa  17344000                                                                                          <----------                                                                                         ------>ZmHOX2a(2)                                                                                       --------->ARR11(3)                                                                                       <---------ARR11(3)                                                                                       <---------AGP1                                                                                       --------->ARR14(2)                                                                                       <---------ARR14(2)                                                                                  ----------->RAV1(2)                                                                                  ===================                      --------->YAB1                                            <---------ARR14(2)         --------->ANAC58                                                       --------->ARR14(2)         --------->ANAC58                                                      =================HOX2a_HOX2a    <-----------GT1 <---------ARR11(3)                  <---------ZAT6         <------ZmHOX2a(1)<---- -------GT1     --------->YAB1                     --------->YAB1    ---------->DOF2  <---------CCA1(2)   accttttaaccaagaaaatcaaaatcatactcacagcaaaaaaaaaaactgaataatagagatagagaaaccaaagaaataggaacctggatctggtgct  17344100                                            <---------ARR14(2)                                         <---------ANAC46                                         --------->ANAC58                                         --------->ANAC58                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            --------->ARR14(3)                            <---------ARR14(3)                            <---------ARR11(3)                            <---------ARR14(2)                  <---------ZAT2         <---------HSFB2a(2)               --------->ANAC58                  <---------At4g35610    --------->ANAC55(2)               --------->ANAC58                <---------ZAT18 --------->LBD16            <---------ARR14(2)  <---------ETT(2)              --------->At4g35610        <---------ANAC55(2)      --------->ANAC58              <---------At4g35610       <---------LBD16    --------->ARR14(2) --------->SPL7     --------->HSFB2a(2)    --------->ARR14(2) <----------ID1     --------->ANAC46 -RAV1(1)     <------NtERF2 --------->ARR11(3)--------->DEAR3(2)  <---------YAB1            --------- =RAV<---------HSFB2a(2)   <---------GLK1(1)--------->ARR14(2)    --------->ANAC58 --------->AtMYB61 ------DOF2 <---------WRKY38(1)--------->HSFB2a(2) <---------------AtSPL3 <---------LBD16 <----------DOF2   tcttgttctcgtagtcagcgagcttatcgagatcccgaatgttacggaaacgacgagtacggttcttcacgatagacacggacgacctccatctttgacg  17344200            <---------GLK1(2)            --------->ARR14(2)            <---------ARR14(2)                                          <---------ALFIN1      ----------->HVH21               <---------MYB52(1)          --------->ZAT6      --------->DEAR3(1)<---------ALFIN1                    --------->ANAC58 -->HVH21<---------ANAC46       <---------GLK1(1)           --------->ANAC58              <----------ID1   cgcttccagcgacggattcttagcctccacctcgaaatcccttagcaagttcgacatttctcacgctctcactaccactctctgttttcacagagacaaa  17344300                <------NtERF2                --------->ZAT2                <---------ZAT2                <---------At4g35610                --------->At4g35610              <-----------RAV1(2)        <------NtERF2       ------>NtERF2      <---------ANAC46     --------->ATERF1(1)                                          <----------DOF2     <------NtERF2                                                <---------DAG2    ------>NtERF2                                                 <---------------AGL15    <---------ATERF1(1)                                           --------------->AGL15    <---------DEAR4(2)                                           <-----------------AGL1    <---------ERF1                                               <-----------------AGL2    <---------RAP2.3(1)                                          <---------ANAC58    <---------ORA47(2)                                <---------ANAC58    <---------DEAR3(2)                                <---------ANAC46    <---------RAP2.6(1)                             <------MYB83 <---------ANAC46   <---------ATERF1(2)                              <------MYB46(1)   <---------RAP2.3(2)                            <---------WOX13(1)   --------->ATERF1(2)                           <------------CBF<---------ANAC58   --------->DEAR3(1)                            <---------ARR14(2)   <---------RAP2.3(3)                           --------->ARR14(2)   <---------DEAR3(1)                          *TSS<---------AtMYB61<-----------TBP    ----------->HVH21  <---------LBD16                           --------->MYB52(1)   <-----------------AGL3--------->ANAC46  --------->ATERF1(1)               <------ZmHOX2a(1) <---------ANAC58             <---------ALFIN1 <   cttcgccggcgcgaaggcagctgagagagagagagagaggattgagcaacggattggtgtgagagttgctttttatggaatacccaaacccgacccgaat  17344400                                                                            ------>MYB83                                                                          --------->AtMYB61                                                                          ------->GAMYB                 <---------ARR14(2)                                      --------->MYB46(3)             <---------LBD16                                            --------->ANAC58----------->HVH21          <---------YAB1       --------->AtLEC2                     --------->ANAC58   --------->DEAR3(2)       <---------AHL20(2)   <---------ATHB12            ----------->GT1 --------->ANAC58<---------ETT(1)    --------->ARR14(2)--------->PCF2            ---------->ID1      --------->ANAC58   ------>ZmHOX2a(2)    <---------ARR14(2)<---------ZAT18         <---------ANAC58 <---------ICU4      <---------ATHB12 ---------LBD16  --------->ARR14(2)           <---------ANAC58--------->ICU4------>MYB46(1)  <-------   tactcggattttatgctcggatagggcccattcattcaaatttcattttcgtctcattcggataattagtaggcaaccaaatcaaatgatccgacccaga  17344500                                                             <----------DOF2                                                         <---------ANAC46                                                    <---------DAG2                --------->TOE2(3)         <------MYB83                            <-----------GT1        <-----------GT1         <------MYB46(1)                ------>ZmHOX2a(1)<---------ANAC58      <---------CCA1(2)        --------->MYB59                --------->TOE2(3) <---------ANAC58  --------->TOE2(3)   <---------YAB1                    ---------->ID1 <----------DOF2  --------->MYB59      ------>ZmHOX2a(1)   <---------AHL20(2)               <-----------GT1<---------YAB1--------->WOX13(1)      --------->TOE2(3) ----RAV1(2)<-------TEIL  <----------DOF2     <---------ZAT6<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   cgaatattattaggtccataaacatgctcttttttttttttccttatagtattacttttgcgtctttcaattagatacctcatacctcaatcctcaaaaa  17344600                                                                 --------->SPL7                                                               <---------SPL7                                                               ------>NtERF2                                                               --------->ABI4(1)                                                               <---------RAP2.6(3)                                                               <-----------HVH21                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           --------->ANAC46                                                         ---------->DOF2                                                         --------->MYB52(1)                                                         <-----------GT1                                                       <---------MYB52(2)                                                    --------->ICU4  <-----------HVH21                    <------ZmHOX2a(1)              --------->LBD16  --------->LBD16            <----------DOF2                        --------->At5g28300               <---------ARR11(3)      --------->ZAT14                        <---------ANAC58 --------->DEAR3(1)     --------->ARR11(3)     <XXXXXXXXXXXXXXXXXXXXXMIR2936           <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)           <   aaactctctgttctcttttttaggaggtcgtttttggataatactttgctcgccgtaattaacgccgtcccgtcaaattgggcttaagaacttctccctc  17344700                                      --------->HSFB2a(1)                                      <---------HSFC1(2)                                      --------->HSFC1(2)                             --------->ARR11(3)                                      <---------HSFB2a(1)                            <---------ARR11(3)                                     --------->ARR11(3)                              <-----------ARR10                                     <---------ARR11(3)                        xxxxxxxxxxxxxxxxxxxxxx                                     <---------ARR14(2)                      <---------ANAC46                                     --------->ARR14(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                --------->At4g35610                     <---------MYB46(3)                              <-----------RAV1(2)                       <-----------RAV1(1)                             <------ZmHOX2a(2)                        <---------At4g35610                           <------ZmHOX2a(1)                          ----------->RAV1(2)                      ------>NtERF2  --------->GLK1(2)                --------->At4g35610                     --------->ARR14(2)                               <---------ZAT2 --------->GLK1(2)                     <---------ARR14(2)           <----------DOF2   <-----------RAV1(2)              ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ================RAV          <---------YAB1<-----------RAV1(2)      <---------DAG2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------ATHB12 <---------At4g35610<---------GLK1(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   aaatcatcgattctaatagagcggagccaggatcagaagaatcttcgattaccttttgtcagttttgagttcagctgttgccttgaaaatctttctctct  17344800  Previous    Next  AGI:  At2g41560.1    Description:  ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4); calcium-transporting ATPase/ calmodulin binding. Identical to Calcium-transporting ATPase 4, plasma membrane-type (ACA4) [Arabidopsis Thaliana] (GB:O22218); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to ACA11 (AUTOINHIBITED CA2+-ATPASE 11), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB: Range:  from: 17339162    to: 17344347    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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