Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ------>ZmHOX2a(2)                                         <---------GLK1(1)                                         --------->GLK1(1)                                         <------ZmHOX2a(2)                                        --------->ARR14(2)                                        <---------ARR14(2)                                        <---------ARR14(3)                                        --------->ARR11(3)                                        <---------ARR11(3)                                   <------NtERF2                                   ------>NtERF2--------->HSFB2a(2)                                   --------->LBD16                                  --------->DEAR3(1)     <---------ALFIN1 <------ZmHOX2a(2)                 <-----------GT1 <---------LBD16<---------HSFB2a(2)    <---------YAB1        <-------TEIL            ------->GAMYB ------>ZmHOX2a(1) <-----------TGA1     <---------MYB46(3)        --------->DEAR3(1)   XXXXXXXXXXXXXXXXXXXXX>MIR2935     --------->MYB55(2)        --------->ANAC46<---------LBD16 <---------ETT(2)       ---------->DOF2    --------->ALFIN1       <---------ATHB12   ===================================HOX2a_HOX2a <---------DEAR3(1) --------->TOE1(2)   --------->ARR14(3)  --------->DEAR3(1)<------ZmHOX2a(2)    --   gactcggtggttcatgacttaacctgctaatcaacgccgcgagatctcctctggaaacaacaccgtcgtcatcacgatcgatcagtttaaaagcttgaac  17269600                                                                                   --------->WOX13(1)                                                                                  <-------TEIL                                                                                 =================HOX2a_HOX2a                                                                                 ====================                                                       <------MYB46(1)           <------ZmHOX2a(2)                                                       <------MYB83             --------->ARR11(3)                                                     <--------P                 <---------ARR11(3)                                                    <-------GAMYB               --------->ARR14(2)                  --------->LBD16                  <---------MYB46(3)           <---------ARR14(2)                 --------->DEAR3(1)             ------------>AtMYB77            --------->AGP1     ----------->GT1                           --------->ATERF1(1)           --------->SPL7     <---------ZAT6                       ------>ZmHOX2a(2)                 <---------MYB52(1)   <---   --------------------->WRI1     <---------ZAT14 <---------ANAC46      <---------At5g28300<------ZmHOX2a(1)   <---------ANAC46<------NtERF2  --------->ZAT14 <------NtERF2    <---------TOE1(3)    --------->At4g35610 ------->ZAT2   <---------LBD16   --------->ZAT18<---------LBD16   <---------TOE2(3)<-----------HVH21   aagctcagtgtaaaaatcgccggagttttgagggagaacactgatcggagtcgcggttggaccttgtttgaggttaccgtaagatccatcagaggaagag  17269700                                                            --------->ANAC58                                                            <---------ANAC55(2)                                                            --------->ANAC55(2)                                                            --------->ANAC58                                        --------->ANAC58   --------->SPL7                                        --------->ANAC58   <---------LBD16                                 ------>ZmHOX2a(2)       <---------SPL7                                --------->CCA1(2)       <------MYB46(1)                                <------ZmHOX2a(2)       <------MYB83                                -             ----------->HVH21 <---------ARR14(2)      <---------------AtSPL8         <-------GAMYB<-           <---------ZAT2      --------->AGP1--------->HSFC1(2)                      <---------MYB46(3)           --------->At4g35610 --------->ARR11(3)      <---------------AtSPL3        <---------DEAR3(2)           --------->ZAT2      --------->ARR14(2)      --------->MYB59              <---------DEAR3(1)           <---------At4g35610 <---------ARR11(3)  --------->ATHB12                 <---------RAP2.6(2)    --------->ATHB12           <---------AGP1<---------HSFC1(2)               <----------CDC5  ------ ===HOX2a_HOX2a               <---------CCA1(2)   <---------YAB1             <---------At4g35610  <-- ---ZmHOX2a(1)               ----------->ARR10 <----------DOF2           --------->ALFIN1 <---------TOE2(3)   gaagaagcattggagctgaaggaagaaggctcagatctggagacggaagcttttgatttggtacggaagagacgtttggggctgaggcggttgaggctag  17269800      <-------TEIL                      <---------WOX13(1)   --------->At4g35610                --------->ATHB12   <---------ZAT2                    <---------YAB1 -------->DEAR3(1)                   --------->ICU4      <---------GLK1(2) -----NtERF2                       <---------At4g35610 --------->ICU4                  ---------->DOF2 --->MYB52(1)               ---------->DOF2   --------->CCA1(2)                       <------ZmHOX2a(1) -------RAP2.3(1)       --------->CCA1(2)  <---------TOE2(3)  <<<<<<<<<TBF1  <<<<<<<<<<MYB80     <---   cggcgagcttcatatcggagaagaagataagaaagagagatgattgagatttgagtattgattcttcttcttgttttttggtttgagaggaaagaacgag  17269900                                                          <---------HSFB2a(2)                                                    --------->At4g35610                                                    --------->ZAT2                                                    --------->HSFC1(2)                                                    <---------HSFB2a(1)                                                    <---------At4g35610     ---------->ID1                                                    <---------HSFC1(2)     <------MYB46(1)                                                    --------->HSFB2a(1)    <---------ANAC46                                                   ------->TEIL            <------MYB83                                         <---------HSFB2a(1)               <---------ANAC58                                         <---------At4g35610              --------->MYB46(2)                                         --------->ZAT2   --------->HSFB2a(2)                                         <------NtERF2    ------>ZmHOX2a(1)<---------ANAC58                                         --------->HSFC1(2)               --------->MYB111(1)                                         <---------HSFC1(2)             <---------ANAC46          <---------AHL20(2)             --------->At4g35610  *TSS    <---------MYB46(3)         --------->AHL20(2)              --------->HSFB2a(1) <------ZmHOX2a(1)            <----------    ----------->GT1            --------->ANAC58 --------->ANAC46 <---------ZAT14 <---------AHL20(2) <------ZmHOX2a(1)             --------->ANAC58<---------------------WRI1 <---------MYB46(3) ---ZmHOX2a(1)        ---------->DOF2    <---------ZAT2  --------->TOE1(2)<---------AtMYB61      ----   gaaggagggtattaaatggggagagaaagagagaagccatggcagcttccacgaagcttcctaggagagaagtggtttggtgttttatttgatacttata  17270000                                                                        <---------YAB1           <---------YAB1                                            <---------AHL20(2)      --------->ZAT6                               --------->TOE2(3) --------->AHL20(2)    ----------->RAV1(1)             <---------AHL20(2)               --------->AHL20(1) -------------TaNAC69(2) <---------YAB1<---------YAB1    <---------AHL20(2)      <---------YAB1  <--- ----->ANAC46--------->WOX13(1)   <----------DOF2  --------->YAB1   --------->AHL20(2)   <---------AHL20(2)   cacctccaacactatcattcattcattttcattcttcttttattttagggctatcttattttatatggaattttattactaatatgactaattcatttcc  17270100                   <---------MYB52(1)                 <---------ANAC58                 <---------ANAC58           --------->AHL20(2)                       <---------ICU4           <---------AHL20(2)                       --------->AHL20(2)                            ---       --------->AHL20(2)                          --------->AHL20(2)                             ---      <---------AHL20(2)                           <---------AHL20(2)                             <--      --------->AHL20(1)                          <---------AHL20(1)                              <--      <---------AHL20(1)                         --------->YAB1                      ---------->DOF2   --------->AHL20(2)                          --------->AHL20(2)           <---------AHL20(2)   <--- -------DOF2  <-----------GT1             --------->ICU4                   <---------AHL20(2)    <---   tttgttaaaatatttatttccgttttttttgttatacatttgccatttttaaaataatttcaacggttttttttttttttaatgtgcaaaagtttcaacg  17270200         =============================HOX2a_HOX2a         <------ZmHOX2a(1)        <------MYB46(1)        <------MYB83      <--------P     <---------MYB52(1)  <---------ANAC46             ------>ZmHOX2a(2)  <---------LBD16            --------->ARR11(3) <---------LBD16             <---------ARR11(3) ---->TEIL            --------->YAB1 ------>ARR14(2)  --------->AHL20(1) -------ARR14(2)  <---------AHL20(1) -------ARR11(1)  --------->ARR11(3)                                                    <----------ID1 ------CCA1(2)    <---------ARR11(3)                            <---------LBD16     ---------->DOF2 ------ARR14(1)  --------->AHL20(2)                 <---------AHL20(2)           <---------ANAC46  <-   tatctcgggtaggaaacaaatatatcaaaatgatctagtggtttttgtgttgatttttttataaaacggggggatgaatagttgagtaaagaaacaaaaa  17270300                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                            <--------                                                                                          --------->ZAT18                                                                                          <-------TEIL                                                                                          <---------ZAT14                                                                                       --------->At4g35610                                                                                       <---------At4g35610                                                                                <---------GLK1(2)                                 <---------ZAT6          --------->ICU4  <-----------TGA1--------->ALFIN1                               <---------ANAC46     ----------->GT1      <-----------HVH21--------->ZAT14                          <---------YAB1           <-------TEIL      --------->bZIP60(1)------->PIF5                     <------ZmHOX2a(1)           <---------GLK1(2)   <---------bZIP60(1)<-------PIF5 --------AHL20(2)  <---------TOE2(2)           ----------->ARR10  ----------->HVH21  <-----------RAV1(2)   tgtaattgtctgattactacataggattatgttttgtgttattttggattagattcgtaaatatggttctgacatcgtcacagaattgcaggtgcagtgg  17270400                                                                                     <---------AHL20(2)                             <----------DOF2                                 <---------AHL20(2)                          <-----------GT1                                   --------->AHL20(2)      <---------ICU4  ------>MYB83                                         <---------YAB1      --------->YAB1<---------MYB59           <---------ANAC46          <---------AHL20(2) ----MYB46(3)       --------->TOE2(3)--------->AHL20(2)                 --------->AHL20(2) ---AtMYB61       ------->TEIL   <---------AHL20(2) <---------GLK1(1)   --------->AHL20(1)         <- -->ALFIN1       <---------ARR11(3)  <---------AHL20(2)                 <---------AHL20(1)         <- -ANAC46<---------YAB1------>MYB46(1)<---------AHL20(1)      <---------TOE2(3)   ----------->GT1   <-   tcgtctagtcatgactcaagaacctaattttctttttattttattttggtgtggaatttcgatgaggttttcattttattatatggtttaatttgtactt  17270500  Previous    Next  AGI:  At2g41410.1    Description:  calmodulin, putative. Identical to Calmodulin-like protein 1 [Arabidopsis Thaliana] (GB:P30188;GB:Q8LFR1;GB:Q9SLG7); similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT3G10190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23336.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 17268806    to: 17269962    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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