Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------YAB1                         <---------AHL20(2)                         <---------AHL20(1)                       <---------YAB1                                        --------->ATHB51                     <--------HAHB4                                          <--------ATHB1                     <---------ICU4          ----------->GT1                 <---------ICU4         <                    <---------YAB1     ---------->DOF2                       --------->YAB1         -                    --------->ICU4  --------->ANAC58                         --------->AHL20(2)     <                  <--------HAHB4    --------->ANAC46                        <---------ATHB12        -                  <---------ICU4    <---------ANAC46              --------->ANAC58                  -                  --------->YAB1    <---------ANAC55(2)           --------->ANAC58         --------->TOE1(2) ---------->DOF2 <---------YAB1     --------->ANAC55(2)           <---------ANAC55(2)  ----------->HVH21 ------>AtLEC2   --------->ICU4     --------->ANAC58       <---------LBD16  <---------ATHB51   <-----   atgcaaaggaggtaatgttatcattattattttttgttacgcaaaggaggtaattttgttattcggataagtaagtcaataatttcgatgggacatagga  17219600      <---------ARR14(2)      --------->ARR14(2)    <---------MYB46(3) <------MYB83 <------MYB46(1) <---------MYB46(3) ---------MYB46(3)                         --------->ANAC58            --------->TOE2(3) -------->ALFIN1              --------->ANAC46               ---------->DOF2    -------->HAHB4 ---------AtMYB61           --------->TOE2(3)               --------->YAB1      --------->ATHB12 -------->MYB111(2)        <----------ID1  --------->ANAC46<<<<<<<<<ARR2       --------->ICU4 -------->MYB111(1)----------->GT1         --------->ANAC58<---------ATHB12  --------->YAB1 -ZmHOX2a(1)      <------ZmHOX2a(1)     <----------ID1   --------->WOX13(1)  <---------ICU4   agttggtggatacaattgaaggagttaaaaccacaaaactaaacgacgaaacaaaaaaacaatcaaagttttttcttaaaaatgatggagaaatttgtga  17219700                  ------>NtERF2                 <---------RAP2.6(2)                 <---------RAP2.3(3)                 <---------ANAC46                --------->ATERF1(1)              ----------->HVH21              ----------->TGA1            <---------MYB46(3)           <---------AtMYB61           --------->ALFIN1           <---------DEAR3(1)         <---------ZAT2        <---------DEAR3(1)        --------->ALFIN1        <---------AtMYB61      --------->LBD16     <---------ANAC58             --------->MYB46(3)     <---------ANAC46         --------->MYB46(3) --------->ANAC58     <---------ANAC58        <------ZmHOX2a(2)   --------->ANAC58        <---------At4g35610     <---    <---------LBD16<------NtERF2--------->MYB52(1)       <-----------GT1 --------->At4g35610   ------ <---------ANAC58--------->ATERF1(2)          --------->STY1(2)       <---------MYB52(1)    --------- <---------ANAC58<---------DEAR3(1)           <---------STY1(2)      <-----------HVH21   <------ZmHOX2a(1)   gtaccttgcggaggtggtgacggcgaaatcgatccaacggctctcattagctagccacttaacaattcgaccgtcagataaaccggtgtaaggaccatcg  17219800                                              <------ZmHOX2a(1)                                             <------MYB46(1)                                           <--------P                                         --------->MYB55(2)                                         <---------MYB46(3)                                        <---------AtMYB61         <---------ARR14(2)        ---------->DOF2                 --------->ALFIN1          --------->ARR14(2)        ------>ZmHOX2a(1)      XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B <---------MYB52(1) --------->GLK1(1)          <---------GLK1(2) ------------------WRI1             <---------LBD16   --------->ANAC58               --------->ARR14(2) --->DEAR3(1)                 ---------->DOF2<------MYB83 <---------GLK1(1)          <---------ARR14(2) >AtMYB61             <---------LBD16 --------->LBD16 --------->ANAC58       <---------ETT(2)   ccgaaaaaatcaaagacaaaactctccggtcccaaagctccggtggtaggaatcagacggaaatcagggatttggactgtcaacatggattctcctccat  17219900             --------->LBD16         --------->MYB52(1)           <---------LBD16          --------->CCA1(2)     <---------ALFIN1          --------->MYB52(1)      --------->YAB1          --------->AtMYB61                      <---         <---------ALFIN1      ---------->DOF2           --------->MYB46(3) <---------ICU4      <----        ----------->HVH21  --------->ANAC58             ------>NtERF2      <---------YAB1  <---------AHL20(2)    --------->PCF5         --------->ANAC58   ------->GAMYB              --------->YAB1  <---------RVE1(1)    --------->PCF2      ----------->HVH21   --------->At4g35610         <-------TEIL    --------->ARR11(3) <---------AtMYB61      ----------->TGA1   ----------->RAV1(1)     <------ZmHOX2a(1)    <---------GLK1(2)   gttttggtccctcaccggataaatcagtgacgctaaagataagggcaacagaagttgccaccaccaagaggagtttcatcattttgttcagatttttttt  17220000                                                                                              <------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                           <---------ICU4                                                                                          --------->AHL20(2)                                                                         <-----------TBP  --------->ICU4                  ------>ZmHOX2a(1)                                  <-------GAMYB        <---------AHL20(2)          <---------WOX13(1)                                        ----------->GT1<------NtERF2        <---------ICU4                       <---------MYB46(3)     <---------MYB46(3)    <---------ATHB51     --------->YAB1 <----------DOF2    <-----------RAV1(1)      <---------AtMYB61<---------ANAC58 --------GT1 <---------ANAC58        <----------DOF2            <-----------RAV1(1)--------->At4g35610 -------GT1  <---------ANAC58        *TSS<---------AtMYB61      <---------YAB1   <---------ANAC58   tcccctatagtaattgcttcctctttttttttgttttgtctttgtggtggtaacagagtaagagttatggtggttatatataggcgtctgaaataattaa  17220100                                --------->AHL20(1)                                <---------ARR11(3)                                     --------->ATHB12                                <---------AHL20(1)                                    <---------AHL20(2) ---AHL20(2)           <---------ANAC58         <---------AHL20(2)                <---------YAB1 -->AHL20(2)           <---------ANAC58         --------->AHL20(2)              ----------->GT1    <- ->ICU4             --------->ARR14(2)     <------ZmHOX2a(1)           <---------GLK1(1)    <-------- --YAB1             <---------ARR14(2)<----------DOF2         <---------YAB1  <---------ANAC46   <---   tagttttatcttatacatgtcgaattcgtgtcaaaatattctttaggaaattaaaaattttctcattcttgggatttgtggattgtaattcattgttatt  17220200                                                  ---------->DOF2                                              ------>ZmHOX2a(1)           <---------DAG2                    --------------->AGL15           --------->TOE2(3)                 <---------------AGL15           --------->TOE1(3)                ----------------->AG           <---------MYB59                  ----------------->AGL2                             <----- <---------ANAC58                    <---------GLK1(1)                                         <----- <---------ANAC58                    --------->GLK1(1)                                         <----- ----------GT1                      <---------ARR11(3)                                   --------->ATHB12 -YAB1  <-----------GT1 <-----------GT1     ----------------->AGL3                      ----------->ARR10 ------AHL20(2) <-----------GT1     --------->ARR11(3)                    <-------TEIL  <---------YAB1   ttttcttgtcttaccttatttctatttttctgttcaaagatttccttcctaataaagcatttcattttagtatatatacatgtagatggtatgatttgct  17220300         --------->ARR14(2)         <---------ARR14(2)       --------->LBD16      <---------ANAC46     <---------LBD16                                  <----------DOF2    --------->MYB52(1)                             <---------ARR11(3)                         <------ ----ANAC46                                        --------->ARR11(3)     <-----------GT1  --------->ANAC58 ----ANAC58         <---------ALFIN1           --------->ZAT6     <---------YAB1           --------->ANAC58 ----ANAC58         ----------->RAV1(1)   --------->YAB1 --------->AHL20(2)    --------->AtLEC2   tgcaaatgccggatattgagggccacatttacttcattgtccaattttaagactatcttttatatactctgatttttttccattcaagtttacaagcttt  17220400                   --------------->AGL15                      <---------ARR11(3)                   <---------------AGL15                      --------->ARR11(3)                  ----------------->AGL1                     --------->CCA1(1)                  <-----------------AG                     --------->YAB1             <---------ICU4      ----------->GT1           --------->AHL20(2)            <---------YAB1     ----------->GT1           --------->AHL20(2)             --------->ATHB12            --------->ICU4     <---------ANAC46          --------->AHL20(1)            <-------TEIL          --------->YAB1      --------->DAG2            --------->YAB1          <---------AHL20(2)  ----------->GT1 <-----------------AGL1              --------->AHL20(2)        --------->AHL20(2) <- ----DOF2<---------ATHB12    ---------->DOF2   ----------->RAV1(1)        ----------->GT1       -----   tttttggtgaaatcatgtttacaagtttgggtaaagtgtaaatgttatccaacaaaaaaaataatatctatctatatggaaaataaatattcatttgcac  17220500  Previous    Next  AGI:  At2g41290.1    Description:  strictosidine synthase family protein. similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63059.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 17217506    to: 17220037    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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