Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      ------>MYB46(1)                                    ------>MYB83                                  ------->GAMYB                                  --------->AtMYB61                                         ---------                                  <---------MYB59                                         --------->ANAC46       --------->TOE2(3)         --------->MYB46(3)                                   --------->CCA1(2)       --------->TOE1(3)        --------->ANAC58          <-----------GT1          --------->ANAC58      --------->ZAT6            --------->ANAC58       --------->CCA1(2)           --------->ANAC58 -------->ZAT6             --------->ANAC58           <---------ARR11(3)           --------->ANAC46 --->YAB1                  --------->ANAC58  --------->MYB52(1)             --------->AHL20(2)   taactctaaccctaaccaagtccgaaaccaaggcaaccaaacaagacgaacagatagatataactcttgggaatttgataaattcaagctacaagtgacc  17089100                                                                                   --------->YAB1                                                                             ----------->RAV1(1)                                                                           <---------At4g35610                                                                           --------->At4g35610                                                                           --------->ZAT2                                                                         ================RAV                  <----------DOF2                                        <-----------RAV1(2)              XXXXXXXXXXXXXXXXXXXXX>MIR402        ------->TEIL           ---------->CDC5    --------->At4g35610 <-----------GT1    --------->AHL20(2)  <---------YAB1--------->RAP2.6(2) -->HVH21    ---------->DOF2            ----------->GT1    <----------DOF2 <---------ZAT2      ------   atagggagcaaaaatcaaagctttataaacctctgagtgatgagataaaatgtatcgccttctttactattagcctcagcagcaatagcaatgtctctga  17089200                            <---------ANAC58                            <---------ANAC46                            <---------ANAC58                            --------->ANAC55(2)                        ----------->GT1                           ------>ZmHOX2a(2)                          <---------HSFB2a(2)                           <-------TEIL                               --------->HSFB2a(2)                          <------ZmHOX2a(2)                        --------->ARR14(2)                          --------->CCA1(2)                        <---------ARR11(1)                         --------->ARR14(2)                        <---------ARR11(3)                         <---------GLK1(2)                         --------->ARR11(3)                         <---------ARR14(2)<---------At4g35610     <---------ARR14(2)                         --------->AGP1    --------->At4g35610    <---------CCA1(2)                       ----------->ARR10--------->At4g35610   ------>NtERF2                 --------->LBD16        <---------At4g35610   --------->LBD16               <---------LBD16         <-----------RAV1(1)   --------->DEAR3(1)              ====================HOX2a_HOX2a                --------->ANAC58                   <----              <---------LBD16     <---------At4g35610        --------->ANAC46                   -----              ===================HOX2a_HOX2a                 --------->ANAC58           <-------TEIL --->At4g35610------>ZmHOX2a(1)<---------ZAT2             --------->AtMYB61      <------ZmHOX2a(1) --   tgaaaactcgctcttcctcgggagacagatccgtgctgctactgctgcttcccatcgatacctccgccatatctcgaaaattaggagaaattcgtttcag  17089300                                                                                      --------->LBD16                                                                                      ------>NtERF2                                                                                     <---------DEAR3(1)                                                                                    <---------LBD16                                                                             <---------SPL1(1)            --------->HSFB2a(2)                                              --------->SPL1(1)            <---------HSFB2a(2)                                             <---------SPL7           <---------ANAC46                                               <---------------AtSPL3        <----------DOF2                                                   --------------->AtSPL8      <---------ZAT2                                         <---------MYB55(2)--------->ANAC58      <---------At4g35610                                    --------->MYB46(3)--------->ANAC58      --------->At4g35610                              ------->GAMYB      --------------->AtSPL3      --------->ZAT2                        <---------At4g35610  ------->GAMYB--------->SPL7     ---- -----At4g35610                             --------->At4g35610 <-----------------------TaNAC69(2) ---->At4g35610 --------->ARR14(2)       ---------->DOF2 --------->DEAR3(1)--------->DEAR3(1)  ------ -------->DOF2  <---------ARR14(2)   --------->GLK1(2)--------->DEAR3(1)------------------>SPL14 ----   ctaaagtcagctttcgcgaattctagctatgaagagaagaatctaaagctgagacaacgccgaacaaccgtgcttcgccgtacgactccggcgagagtaa  17089400           --------->CCA1(2)          --------->ARR14(2)        <---------MYB46(3)       --------->ALFIN1       <---------ANAC46      <-------GAMYB      --------->At5g28300      <------NtERF2  --------->TOE1(3)     <---------MYB46(3)                                        --------->ANAC58     <---------ORA47(2)   <------------MYB.PH3(1)              --------->ANAC58    --------->ALFIN1 --------->TOE2(3)                     --------->DEAR3(1)    <---------DEAR3(1)   --------->RAP2.6(3)             --------->At4g35610          <----------DOF2    <---------DREB2C(2) --------->MYB52(1)               <---------At4g35610    --------->ARR14(2) ----->ANAC58 --------->YAB1        <---------LBD16    --------->ZAT18   --------->DAG2 ---->DOF2<---------ARR14(2)  <---------DAG2        <---------ZAT6      ---------->DOF2     <-------- ----->ANAC58<---------YAB1   <----------DOF2---------->DOF2--------->At4g35610 <---------ARR14(2)   agcaaggcggtggatatgataaaccctaacggcttttttgggggagacaaagtagagtgagccgctcgctaacaaaaagtcggaacctcttttttttctc  17089500                  <---------ANAC58                  <---------ANAC58              <---------ANAC58              <---------ANAC58             <---------ZAT2             --------->ZAT2           *TSS ------>NtERF2          <---------ANAC58          <---------ANAC58         =========================HOX2a_HOX2a         ------>ZmHOX2a(2)                                                    <---------AHL20(2)        <------ZmHOX2a(2)                                                    --------->AHL20(2)        ==========================HOX2a_HOX2a                             --------->YAB1       <---------GLK1(2)                                            ----------->RAV1(1)       --------->AGP1                                              --------->AtMYB61       <---------ARR14(2)                                          <---------ALFIN1          --------       --------->ARR14(2)                                         --------->MYB46(3)<---------TOE2(3)       --------->ARR11(3)           <---------ICU4        --------->AHL20(2) <---------AHL20(2) ---GT1<---------ARR11(3)  ------>ZmHOX2a(1)   --------->MYB59  --------->ANAC46 --------->AHL20(2)   tctgaaacagatccttgctggcttcgctccttagatagtcatttcgaaataggtccccaaaaaaatccaccaccatttataaatttaagaaaaaaaacaa  17089600                                                                    <---------YAB1                                                                --------->TOE2(3)                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                                             --------->CCA1(1)                                                             <---------RVE1(1)                                                             --------->RVE1(1)               <---------AHL20(2)                            --------->GLK1(1)          ------>MYB83                               --------->AHL20(2)          ------>MYB46(1)                       <-------TEIL <---------GLK1(1)            -----------     <---------WRKY18(1)                       <--------P    <---------CCA1(1)   <---------AHL20(2)    --------->WRKY38(1)                      ----------->GT1--------->ARR11(3) <---------RVE1(1)    --------->WRKY12                        --------->DAG2  <---------ARR11(3)--------->ARR11(3)    --------->WRKY45                  <---------WOX13(1)---------->DOF2       <---------ARR11(3) ---->CBF----------->RAV1(1)       --------->ICU4    <---------AHL20(2)       <---------GLK1(2)  <---   tttttgttgaccaacattttttttttttgctcttgcactaattgaaaaggttgatttaaaaagatatcttaaaattgttagatttttttttttttgtaac  17089700                                                                         <---------AHL20(1)                                                                         --------->AHL20(1)                                                                         <---------AHL20(2)                                                                 <---------YAB1                                                                 ----------->GT1                                                               <---------ICU4                                                               -------->HAHB4                                            ---------->DOF2    --------->YAB1                                          <------MYB83        <---------ATHB12    ----------->GT1                                          <------MYB46(1)   --------->YAB1        <---------ANAC58                                        <--------P         --------------->AGL15  <---------ANAC46                                <<<<<<<<<<<<<<<<<LFY       ==========================================                            --------->TOE2(3) --------->ANAC58<---------ATHB51    <---------ANAC58                            --------->TOE1(3) --------->ANAC58--------->ICU4<---------YAB1         <- ---->AtSPL8             ------->TEIL <---------MYB46(3)   <---------------AGL15  <---------ANAC55(2) -------DOF2        --------->CCA1(2) --------->ATHB12  <-----------GT1  --------->AHL20(2)<---------TOE2(3)   ttttattttctcaaattgttagatatgaaactttaaacaatggttggaaagaaacattttactaataatgaaaaatttattaatgcgtaaattgatgttt  17089800                                                                                         --------->AHL20(2)                                                                                         --------->AHL20(1)                                                                                     --------->AHL20(2)                                                                                    <---------ATHB12                                                       --------->ARR14(2)           --------->AHL20(2)                                                       <---------ARR14(2)  <---------HSFB2a(2)               <-----------GT1                     ------->MYC3            --------->HSFC1(1)          --------->AHL20(2)                       <-------MYC3            --------->HSFB2a(2)          <---------AHL20(2)                  <---------------AGL15        <---------HSFC1(1)       --------->AHL20(1)                     ========================================MADS_MADS       <---------AHL20(1)                    <-----------------AGL1       <---------LBD16<---------AHL20(2)    --------->AHL20(2)                       --------->ANAC46       <-----------------AGL3 =============================================================MADS_MADS  ----------->RAV1(2)   ------ --------TOE2(3)      <---------YAB1       <-----------GT1     <---------CCA1(2)--------->MYB46(3)   tgagattaatatataaataacatgttgataagaggcctggtcaatttactcaacgtggaaactccatctctcttcttctggaaccaataaataaaataaa  17089900                ------->TEIL                             <-----------RAV1(2)                 <-------               <---------CCA1(2)                      <---------At4g35610                   <--------      <----------DOF2                                 --------->At4g35610             ------->TEIL   <---------ARR11(3)                              --------->WRKY12                   <---------ARR14(2)   --------->ARR11(3)         <---------ZAT18      --------->WRKY38(1)                --------->ARR14(2)  <---------At4g35610         --------->ZAT18     <---------MYB52(1)    <-----------GT1<---------At4g35610 ---->DOF2 <---------ANAC46---------->DOF2       <-------GAMYB---------->DOF2        <---------CCA1(2)   agtaagctctttctcgtgaatctctgagttaatgcgctaaactaatctctccgttgagctcaggtaaagagttgtttctattcacatgtatctgattatt  17090000  Previous    Next  AGI:  At2g40930.1    Description:  UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 5 (UBP5) [Arabidopsis Thaliana] (GB:O22207;GB:Q9SEX3); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10590.2); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10570.1); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10590.1); similar to hypothetical protein OsJ_032537 [Oryza sativa (japonica cultivar-group)] (GB:EAZ18328.1); similar to hypothetical protein OsI_034849 [Oryza sati Range:  from: 17083390    to: 17089511    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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