Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------YAB1                                 <---------ICU4                                 -------->ATHB1                                 --------->YAB1                                <---------AHL20(2)                                --------->AHL20(2)                                <---------ATHB51                                --------->ICU4         --------->ARR11(3)  <---------AHL20(2)   <---------At4g35610       <---------AHL20(1)   --------->At4g35610       --------->AHL20(2)        --------->ATHB12 -----DAG2                   --------->AHL20(1)        <---------ICU4 ------DOF2               --------->TOE2(3)           <---------YAB1                            ----- ---GT1  <---------ARR11(3) --------->AHL20(2)      --------->YAB1                           ------->TEIL   ttttctgctaagatgtcttaatgtgtttcattaaattattatgggcttaaacaaacatcattggcccatttgtttttgttttttctgagcatatgtatat  16993900                                                              --------->AHL20(2)                             <---------YAB1              XXXXXXXXXXXXXXXXXXXX>MIR844                       <---------YAB1          --------->MYB46(3) ---->ANAC55(2)    <---------ANAC46<---------YAB1     ----------->RAV1(1)               <-----------GT1   gtaacgtttgtatgagtaattgagtatgagtatgagtatcagtgtatcaacaacaacaacaaaattacttacaagtttcaacgaatataaaaacctcatg  16994000                                                                                          --------->GLK1(1)                                                                                         <---------GLK1(1)                                                                                        <------ZmHOX2a(1)                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                --------->YAB1   <---------TOE2(3)                                                                <---------ICU4------>ZmHOX2a(1)                                                               --------->ICU4 <----------DOF2                                                               <---------ATHB12  --------->MYB59                                                             --------->WOX13(1)<---------MYB52(1)                     --------->ARR11(3)        <---------HSFC1(2)           ===================HOX2a_HOX2a                     <---------ARR11(3)        --------->HSFC1(2)           ------>ZmHOX2a(2)     <--           <-----------GT1            <----------DOF2    ----------->GT1  <-----------------AG   ----   agaaaatagtttttttctctatagatatcaaatatcgaaactttgttgaaacttccgactagttaatcatggaagtgatcctttaggtaaggaatcccat  16994100                                                                                --------->ANAC55(2)                                                                                <---------ANAC58                                                                                <---------ANAC55(2)                                                                                <---------ANAC46                                                                                ----------->GT1   <--                                                                                <---------ANAC58-----                                                  --------->YAB1    --------->YAB1              -----        <---------ANAC58                     ----------->GT1        <---------ICU4      <---------ANAC55(2)        <---------ANAC58                    --------->DAG2         <---------YAB1       --------->ANAC55(2)   <---------AHL20(2)                      ---------->DOF2        <-----------GT1       ----------->GT1  --------->AHL20(2)               --------->ARR14(2)           <---------AHL20(2)     <-------TEIL - -------AHL20(2)                   <---------ARR14(2)         ------->TEIL  <------------CBF    <---- ----->AHL20(2)  --------->At4g35610    <---------AtLEC2 --------->YAB1   --------->MYB46(3)    <----   aaaattttatgcgtaaatcatctaaaccaaaaacccaaatttgcataaagtataatcaaacatgaatttatcatcacccattgcgtaaattcgtaacaca  16994200      <---------ANAC58      <---------ANAC58      <---------ANAC46   <---------WOX13(1)                                                                         -------  <---------ARR14(2)                                                                 <---------YAB1  <------------CBF         --------->MYB52(2)                                      <---------ICU4 -------LBD16            <---------MYB52(1)                                        --------->YAB1 -->MYC2                --------->TOE2(3)                                         <---------ATHB12 -->MYC3          <----------DOF2                                                 --------->ICU4 -------->LBD16  <---------ANAC46                     <---------ANAC46          --------->WOX13(1) ---MYC3         <---------ANAC58             <----------DOF2--------->ICU4   ------------>CBF<------ ---MYC2         <---------ANAC58    <------------CBF<---------TOE2(3)    <-----------GT1    --------   tgcggattgcttatacatggcttattcgttagtagtttatattgtaagctttatttaggtgtaatgtttttgaaatttacttcaatcatgagaaaattaa  16994300                                                                                   <----------DOF2                                                                                ------>NtERF2                                                                             --------->HSFB2a(2)                                                                            <---------DEAR3(1)                                         --------->ARR14(2)                 <---------ANAC46                              --------->ANAC46<---------ANAC58            <-----------HVH21       <--                              <----------ID1  <---------ANAC58          <-------TEIL      <---------ANAC46 -->AHL20(2)        <---------TOE2(3)    <---------ARR14(2)       <-------TEIL<------NtERF2   <------ ---AHL20(2)     <---------AHL20(2) --------->AtLEC2             --------->DOF5.7(2)    <---------ANAC46 ->AHL20(2)     <----------DOF2 ------------>CBF            --------->ANAC46<---------LBD16   -------   taaacgacgatgtgtctgttttaatgtattaaacgacaatgcaaatatgcgtttcaagcttcacgacgttcacattcgtcggggactttgttgtgtagct  16994400                                                                      <---------ARR11(3)                                                                    --------->ANAC58              ------>NtERF2                                  <---------ARR11(3)            <---------LBD16 <---------LBD16                  --------->ARR11(3)   <-----------GT1     --------->AHL20(2)                    --------->GLK1(2)                  <---- -------GLK1(2)   <------NtERF2        --------->GLK1(1)     --------->ARR14(2)             <-------- ---At4g35610 --------->LBD16      --------->YAB1            <---------ARR14(2)--------->YAB1  <----- -->At4g35610--------->ANAC46  <------ZmHOX2a(1)   ---------->DOF2  --------->ANAC58      --------->YAB1   gattcttacatttctccggcatcgattaattcaggaatcagagctctaattcagaaaggagagtatctacaagctctgcatttatactctaagcatgatg  16994500                           --------->ANAC55(2)            <----------DOF2                     <---------MYB52(1)               <---------DEAR3(1)                            <                   <---------ANAC58                 <---------ANAC58                                <                   <---------ANAC58                 <---------ANAC58     <---------MYB52(1)      <---           --------->HSFB2a(2)                     <---------ZAT2 <-----------ARR10              <--- -----MYB46(3) <---------GLK1(1)                <---------ANAC58  --------->GLK1(2)             ----- -YAB1 <----------DOF2   <-----------GT1        <---------ANAC58  ------->TEIL           --------->YAB1 ----YAB1  <---------HSFB2a(2)              ---------->DOF2      <---------GLK1(2)      <---------ATHB12   gttcttctcctttctggacttccgttttcacgtttccttctctacttaaagcttgctcggctcttacgaatctcagttatgggaaaaccattcatggttc  16994600                              --------->ATHB12                                       ------>NtERF2                           ------>ZmHOX2a(1)                                         --------->ORA47(1)   <---------ANAC46        <----------DOF2                                           <---------SPL7<-  <------NtERF2          ------>ZmHOX2a(2)                                           <---------RAP2.6(3) ---------MYB46(3)     --------->ARR11(3)                ----------->GT1            <---------ANAC58 ---------DEAR3(1)     <---------ARR11(3)               ------->TEIL                <---------ANAC46< ---MYB46(1)         <---------YAB1          ----------->GT1                 <---------GLK1(2)   ---- ---MYB83          --------->CCA1(2)       <---------ANAC58                <---------TOE2(3)    ----- ---->MYB59  <---------DEAR3(1)            <---------ANAC58     <-----------RAV1(1) <---------ANAC58<   ggtcgtcgtgttgggatggcgatatgatcctttcattgcaacctcgcttgttaatatgtatgtaaaatgtgggtttttagattatgccgtccaagtgttc  16994700    <------MYB83    <------MYB46(1)   <---------AtMYB61   <---------MYB46(3)  <--------P                     <---------LBD16  <---------MYB55(1)          <---------At4g35610                 <---------------AtSPL3  <---------MYB52(1)          --------->ZAT2                      --------------->AtSPL8            < <-------GAMYB                <---------ZAT2                      <---------------AtSPL8     <------ZmHOX2a(1) --------DEAR3(1)         --------->ARR14(2)                      <---------MYB46(3)       <---------TOE1(3) ---------MYB46(3)        <---------ARR14(2)                   --------->ATHB12            <---------TOE2(3) -------->AtMYB77         --------->GLK1(2)                --------->ATHB12            --------->CCA1(2) ------>HVH21        <---------ZAT14      <---------At5g28300<---------WOX13(1)       --------->ARR11(3) ---------DEAR3(2)  --------->ALFIN1     <-----------GT1  <---------YAB1              <---------ARR11(3)   gacggttggtctcagagtcagagtggagtttctgctcgggatgttactgtttggaactctatgattgatgggtacttcaaatttcgaagatttaaggaag  16994800  Previous    Next  AGI:  At2g40720.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41519.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16994347    to: 16996929    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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