Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                                                                   --                                                                                         <------MYB83               --------->GLK1(2)                                                         <---------MYB46(3)             --------->MYB46(3)                                                          <------MYB46(1)          --------->REM1(1)   <---------MYB52(1)              --------->YAB1            <---------AtMYB61      <---------At4g35610    --------->LBD16                 <---------YAB1            <---------MYB52(1)      --------->At4g35610  <---------LBD16                 <--------HAHB4             <-------GAMYB--     --------->MYB52(2) <---------HSFC1(2)                 --------->YAB1            ================   --------->DOF5.7(2)  --------->HSFB2a(1)               <---------YAB1       <----------DOF2     <-   <---------MYB52(1)   <---------HSFB2a(1)      <---------REM1(1) <---------LBD16   <-----------RAV1(1)  --------->TOE2(3)   <---------GLK1(2)---------->DOF2----------->GT1       <-----------GT1        ==   ttttcgttagcttcaacaatcttggaatctccggtagtcgtgaaagaagtaatgtagagtattattatacctggatttttactttctctgttggtttctt  16969900               --------->ATHB51            --------->YAB1     --------->At4g35610     <---------At4g35610    ----------->RAV1(1)  --------->At4g35610    --------->LBD16 ------->At4g35610     <---------LBD16 --------At4g35610    --------->MYB52(1)                                               <---------ICU4 ------->ZAT2  <---------ICU4                         --------->ARR14(2)   --------->TOE2(1) --------->RAV1(2)<---------ICU4                      <---------ARR14(2)   --------->TOE1(1) ==========RAV<---------YAB1                      <---------ZAT14         --------------->AtSPL8 --------ZAT2 --------->ICU4  <---------ICU4      --------->ZAT14      <---------HSFC1(2)--------->At4g35610 ===============RAV  <-----------GT1          --------->YAB1 <---------LBD16<---------SPL7   cagctgcagcagaatcataattgttaccggaatcaataccaggctgaatcagagcagttcgtcttcggatagaaacgtcgtactcttcatcatctccatc  16970000                                                                                        <---------ARR11(1)                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)                                                                                        <---------ARR11(3)                                                                                        <---------AGP1                                                                                        --------->ARR11(3)                                                                                --------->At4g35610                                                                                <---------At4g35610                                                                                <---------ZAT2                                                                                --------->ZAT2                                                                        <---------DEAR3(2)  ---------                                                                        <---------MYB46(3)------>ZmHOX2a(2)                                                                      <------NtERF2     <-----------ARR10                                                                     ------------>AtMYB77<------ZmHOX2a(2)                                                                     ------>NtERF2   --------->LBD16                                             <---------ANAC58       --------->DEAR3(1) <---------ARR14(1)                                             <---------ANAC58       --------->At1g77200<---------CCA1(2)                                            --------->ZAT2          ----------->HVH21--------->HSFB2a(2)                                            <---------ZAT2         --------->RAP2.3(1)--------->LBD16                                 --------->At4g35610             ------>ZmHOX2a(2)  <---------LBD16                                 <---------At4g35610            <------ZmHOX2a(2)  --------->MYB52(1)                                 --------->LBD16             <---------ANAC58<---------ANAC58               <----------DOF2 <---------LBD16               <---------ANAC58<---------ANAC58    ----   ggaatacatggtttcatctttctcaattctatttccgcagaaaccttgctgggttctgaaatggcgatcgccgacggtttcgagctcccggatcttagta  16970100                       --------->ICU4                  --------->ANAC46                                                            <------NtERF2            --------->ANAC55(1)                                                              --------            --------->ANAC58                                                                ---------            --------->ANAC58                                                                ---------            --------->ANAC46                                                                ---------           <---------LBD16                                                                 <---------LBD16          <---------ALFIN1                                             --------->MYB52(1) --------->LBD16        <---------ALFIN1   <-------TEIL                   ------>ZmHOX2a(2)         <---------DAG2  ------->TEIL --------->ARR14(2)                       <---------ARR14(2)          <----------DOF2  --------->ARR14(2) ---------->DOF2                    --------->ARR14(2)         <---------ANAC58 <---------CCA1(2)--------->ANAC58                     <------ZmHOX2a(1)  ------->GAMYB  --------->ANAC46 <---------GLK1(2)--------->ANAC58               ------->TEIL      <---------ANAC46<---------ANAC58 ------>AtSPL8 <---------ARR14(2)     ------->MYC3 --------->TOE1(2)   <---------DOF5.7(2)------>NtERF2 ------->RAV1(2)---------->DOF2       <-------MYC3--------->DEAR3(2) --------->DOF5.7(2)<---------LBD16   cctgaatctcccacacggaaacgcaaagattcatcttcaacgtggaatacgaaccgaggatcgatactgtcgttaacggacatttgcttttccgccggaa  16970200                                                                                             <-------                                                                                   *TSS <---------ANAC46                                                                                  <-------PIF4                                                                                  ------->MYC3                                                                                  <-------MYC3                                                                                  ------->PIF4                                                                                  ------->PIF5                                          ----------->GT1 <------NtERF2           <-------MYC2      -     --------->DAG2                      ----------->GT1<---------DEAR3(1)        <-------PIF5 <----- ->LBD16                       <---------ZAT14       <---------O2   <---------PCF2------->MYC2<------ >RAP2.6(2)                  <---------ZAT14         --------->bZIP60(1)         --------->ANAC58   < >LBD16                      --------->ZAT18         <---------bZIP60(1)--------->ICU4 <------NtERF2< >RAP2.3(2)<------ZmHOX2a(2) --------->ZAT14         --------->O2--------->ALFIN1--------->ANAC58  <-   aattcagaaggcgatcgatagagactggaagagcacagagagagagtttaaaacgacgtcgtcgtaagtgggacatgagtagcacgcgcgtcgtgatggt  16970300      <---------YAB1   --------->ICU4                        <---------PCF2   <---------YAB1                        --------->TCP20 -------->HAHB4                          <---------ARR14(2) --------->ATHB12                        --------->TCP15(1) --------->YAB1                          --------->ARR14(2) <---------ICU4                         <---------DEAR3(2)                   <---------O2 --YAB1                                 <------MYB46(1)                     ------>NtERF2 -------->ICU4 <---------ARR11(1)       <------MYB83                 <---------bZIP60(1) --GAMYB <-----------GT1               --------->MYB55(2)       ----------->GT1 ---MYB46(3)  <---------ARR14(1)       <---------MYB46(3)      --------->DAG2<---------ANAC46 ---------YAB1<---------CCA1(2)    <-----------RAV1(1)        ---------->DOF2--------->O2 ---------ATHB12                   <---------AtMYB61       --------->YAB1  <---------ALFIN1 --------TOE2(3)                <----------DOF2    <---------AtLEC2  --------->bZIP60(1)     <-------   taatgattatgaaaccgtatcatttacctataagcttttggtgggtccgatttacatggactcataaagtgatatcgccacgtagacataacatataggt  16970400                                                                                 <---------TOE2(3)                                                      --------->YAB1             <---------TOE1(3)                                             ----------->GT1                    <---------At5g28300                                            --------->LBD16                    <---------DOF5.7(2)                                          <---------LBD16<---------GLK1(2)   --------->DOF5.7(2)                  --------->TOE1(3)      --------->MYB52(1)         --------->AtMYB61                  --------->TOE2(3)     --------->ARR14(2)     <---------HSFB2a(2) --TOE2(3)     <-----------GT1          <---------ARR14(2)     --------->HSFB2a(2)              <----   ttttatatttatctgaattaccttaaaaacaactaatatcaagaaccgggttacattcagaatttctcgaccacaattcgtttacggtttagagaacata  16970500                                                                                                   <-                                                  <---------ANAC55(2)                              <-                   <-----------GT1                ----------->GT1                             <------                 --------->GLK1(2)              <-----------RAV1(2)                    <------ZmHOX2a(2) <---------ZAT14--------->ARR14(2)             <------ZmHOX2a(2)          <---------ZAT14     ------- --------->ZAT14<---------GLK1(2)     ---------->DOF2                     --------->ZAT14     <------ ---TEIL        <---------ARR14(2) --------->TOE2(3)               --------->AtMYB61 <------ZmHOX2a(1)   cagtacaatgccattacagattctccattttgttctacattaaagagggatcaggtaaactcaaaaaaaccaaaactatagtgagtaggatcacagtgta  16970600         --------->At4g35610                                  <---------ZAT18 --------ARR14(2)                                  <---------ICU4     ----------->HVH21 ----------GT1        ------->TEIL                ------>ZmHOX2a(1) ----------->RAV1(2) ---ZAT14<---------At4g35610                --------->ARR11(3)--------->ZAT14 -->ZAT14--------->ZAT2                     <---------ARR11(3)<---------ZAT14 ---ZAT18<---------ZAT2                 ---------->DOF2 <-----------GT1    ----------->GT1   gtaaccggtttagctgggcaaatgaaccaagtttcggtttgataaagatgtcctcatttcacagttcagtccctgaggggtttcattcccagtgatgctc  16970700                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                                              -------                                       --------->ARR14(2)                                   ---------                                     <---------MYB46(3)                                    <---------HSFB2a(2)                                     <---------DEAR3(2)                                    --------->HSFB2a(2)                                    =================================HOX2a_HOX2a      <-------TEIL                                 --------->ATHB12                                 <---------TOE2(3)                         <---------ARR14(2)                               <----------DOF2 <----------                         --------->ARR14(2)         --------->REM1(1)    <------------------------ANAC81                        <------ZmHOX2a(1)        --------->TOE2(3)    <----------DOF2<-----------ARR10                        ===================HOX2a_HOX2a           <----------DOF2  <---------TOE1(2) <                     <---------LBD16------>ZmHOX2a(2)         ------>ZmHOX2a(1)   <---------TOE2(2)--   tcagtctattcatctctgcaatttcaggatttggatgatcggttccatcttccttcatcttctccttcttttctttctttttcttaggttcttcccgatc  16970800  Previous    Next  AGI:  At2g40640.1    Description:  similar to ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G05230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41513.1); contains domain SSF57850 (SSF57850) Range:  from: 16968218    to: 16970283    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g40650.1    Description:  pre-mRNA splicing factor PRP38 family protein. similar to PRP38 [Medicago truncatula] (GB:ABN05680.1); contains InterPro domain PRP38 (InterPro:IPR005037) Range:  from: 16970397    to: 16972830    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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