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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
At4g35610
--------->
MYB46(3)
--------->
DAG2
------>
MYB83
<---------
ZAT2
<---------------
AtSPL8
------>
MYB46(1)
--------->
At4g35610
---------->
DOF2
>>>>>>>>>>
MYB80
--------->
ZAT2
--------->
YAB1
---------->
DOF2
---------
WOX13(1)
---------->
DOF2
<---------
YAB1
--------->
AtMYB61
tgatttactcaaaccaaacaccaatttgaaagctgagaggcattttagttccagttatatgataaagtactaaacacaaaccaaaaccaaagtattggcc
16752500
<---------
REM1(1)
---------->
DOF2
------>
MYB83
------>
MYB46(1)
--------->
ANAC58
------>
MYB46(1)
--------->
ANAC46
------>
MYB83
--------->
ANAC58
--------->
AtMYB61
<-----------
GT1
<---------
MYB59
--------->
ARR14(2)
taaaatataccaagccaaagttgtagaccaaactaaatgctggacttactactagacaatatcggaaacacgatttaagaggcattttgtagtcgattaa
16752600
<----------
DOF2
<---------
AHL20(1)
--------->
AHL20(1)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR11(3)
<----------
DOF2
<---------
MYB59
--------
<---------
HSFB2a(2)
<---------
At4g35610
--------------->
AGL15
--------->
ANAC58
<---------------
AGL15
----------->
RAV1(2)
<---------------
AGL15
--------->
GLK1(1)
--------------->
AGL15
=========================================
MADS_MADS
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
<-----------------
AGL3
<-----------
GT1
<---------
GLK1(1)
<-----------------
AGL2
<---------
ARR14(2)
<---------
AHL20(1)
---------->
DOF2
--------->
ANAC58
====================================================================
MADS_MADS
--------->
TOE1(3)
<-----------------
AGL3
--------->
ARR14(2)
--------->
AHL20(1)
<----------
ID1
--------->
TOE2(3)
tgggcttctataaatgggctttagggggacagaacttcaactgggaccaaaatattttctcttttgtgaaatcgacaaaagaaatccttaaaaacgaaag
16752700
--------->
ANAC58
<------
ZmHOX2a(1)
<----------
ID1
<---------
ICU4
--------->
YAB1
------>
MYB83
---------->
DOF2
--------->
MYB55(1)
------
<---------
MYB46(2)
---------->
DOF2
-----------
--------->
TOE2(3)
------>
MYB46(1)
--------->
TOE2(3)
---------->
DOF2
--------->
CCA1(1)
--------->
AtMYB61
<-----------
TGA1
--------->
RAP2.6(2)
--------->
RVE1(1)
<---------
MYB111(1)
--------->
ANAC58
----------->
RAV1(1)
--------->
AHL20(2)
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
<---------
MYB111(2)
<---------
ZAT14
--------->
bZIP60(2)
---------->
DOF2
--------->
TOE1(3)
-------->
P
--------->
ANAC58
--------->
bZIP60(2)
--------->
ANAC58
---
-->
DOF2
----------->
GT1
<---------
MYB55(2)
--------->
ZAT18
--------->
ANAC46
----
aaaacaaaagaaagaaaataccttaaatgcagacacctaccataaggacgaaagagagagtgcaacgtcattagaaagtagccaggccacaaaagaaaaa
16752800
<---------
DOF5.7(2)
<------
ZmHOX2a(1)
<-----------
RAV1(2)
<---------
YAB1
--------->
YAB1
--------->
CCA1(2)
<---------
YAB1
---------->
DOF2
<---------
ATHB12
--------->
YAB1
<---------
YAB1
---->
DOF2
------>
MYB83
--------->
MYB52(1)
--------->
TOE2(3)
>
GT1
------>
MYB46(1)
----------->
ARR10
<-----------
GT1
*
TSS
-------->
GT1
--------->
WOX13(1)
<---------
TOE2(3)
<---------
At5g28300
----------->
GT1
----->
DAG2
------------>
CBF
--------->
ZAT6
<-----------
GT1
--------->
MYB52(1)
aggtaaagagagagaccaatcacaggagataacgctaagataaggcttcttacatttaccatcacatataacataacgtt
actattattctaaaatccaa
16752900
--------->
At4g35610
--------->
ZAT2
<---------
At4g35610
<---------
ZAT2
--------->
ZAT2
<---------
At4g35610
<---------
ZAT14
--------->
ZAT14
--------------->
AGL15
<---------
ZAT2
<---------------
AGL15
--------->
At4g35610
<-----------------
AGL3
----------->
RAV1(1)
------>
MYB46(1)
<---------
ALFIN1
<
------>
MYB83
--------->
AtMYB61
-
--------->
MYB46(3)
--------->
MYB46(3)
<---------
RVE1(1)
--------->
YAB1
--------->
AtMYB61
--------->
AtMYB61
<---------
MYB52(1)
--------->
ICU4
--------->
ANAC46
--------->
MYB46(3)
<-----------
RAV1(2)
<<<<<<<<<<<<<<<<<
LFY
<-----------
HVH21
-------->
P
=======================
RAV
aaaaactatatgttataacattggaatcatcagtctctaagcagtatcacaccaactcaat
atggctaccaccactgcagcagcagcctcaggtattttt
16753000
---------->
DOF2
<-------------
------>
NtERF2
------>
ZmHOX2a(2)
------->
GAMYB
<------
ZmHOX2a(2)
--------->
RAP2.6(2)
--------->
ARR14(3)
--------->
DEAR3(1)
<---------
ARR14(3)
--------->
DREB2C(2)
<---------
ARR14(2)
--------->
ANAC46
--------->
ARR14(2)
--------->
MYB46(3)
<---------
ARR11(3)
<---------
ALFIN1
--------->
ARR11(3)
<--------
P
<---------
ATERF1(1)
<---------
ARR14(2)
<---------
MYB52(1)
------>
NtERF2
--------->
ARR14(2)
<---------
ARR14(2)
<---------
TCP20
--------->
LBD16
--------->
ARR14(2)
--------->
PCF2
<---------
LBD16
------>
ZmHOX2a(1)
<------
MYB83
--------->
ARR14(2)
<---------
TCP16(1)
======================
HOX2a_HOX2a
--------->
ANAC46
<---------
ARR14(2)
------>
ZmHOX2a(2)
--------->
HSFB2a(2)
<---------
ARR14(2)
--------->
MYB52(1)
=======================
HOX2a_HOX2a
--------->
ANAC58
<---------
ANAC46
--------->
ARR14(2)
<------
ZmHOX2a(2)
<---------
HSFB2a(2)
<---------
LBD16
<---------
HSFB2a(2)
<---------
ABI4(2)
--
---------
ARR14(2)
<---------
LBD16
--------->
ANAC58
<---------
LBD16
<---------
ATERF1(1)
--
-------->
ARR14(2)
<---------
AGP1
<------
MYB46(1)
<-------
TEIL
---------->
DOF2
<---------
ATERF1(1)
gggatccggattcaagatcctagacctggaaccggtagggtccaagcccggttcgggttcagtttcggaaaaaagaaaccggctccaccgccaaagaaat
16753100
<------
NtERF2
<---------
LBD16
--------->
LBD16
--------->
MYB52(1)
------>
NtERF2
--------->
ANAC46
--------->
MYB46(3)
------>
NtERF2
<------
NtERF2
<------
MYB46(1)
--------->
RAP2.3(1)
<---------
SPL7
--------->
RRTF1(1)
<------
MYB83
<---------
ATERF1(1)
<--------
P
------>
NtERF2
--------->
RAP2.3(2)
--------->
LBD16
--------->
ATHB12
<------
MYB83
--------->
ANAC46
<------
NtERF2
<------
MYB46(1)
<---------
DEAR3(1)
<---------
MYB46(3)
<---------
At4g35610
--------->
LBD16
--------->
LBD16
------>
ZmHOX2a(2)
--------->
At4g35610
--------->
LBD16
--------->
RAP2.6(2)
------>
ZmHOX2a(2)
--------->
MYB59
<---------
LBD16
--------->
LBD16
<------
ZmHOX2a(2)
--------
WRI1
<------
MYB46(1)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR14(2)
------->
ANAC58
<------
MYB83
<------
NtERF2
<---------
AtMYB61
--------->
ATHB12
---
------->
ANAC58
--------->
MYB59
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
caaggcaggtccaagacgatggagacagactagtttggttccccggcgcaaacccgccggaatggttggacggatcgatgatcggagaccgtggatttga
16753200
--------->
TGA2(1)
--------->
bZIP60(1)
<---------
TGA2(1)
<---------
bZIP60(1)
----------->
HVH21
<-----------
HVH21
<------
NtERF2
--------->
At4g35610
<---------
At4g35610
<-------
GAMYB
----------->
GT1
--------->
MYB55(2)
<---------
MYB46(3)
<---------
RAP2.6(2)
<---------
TOE1(3)
--------------->
AtSPL3
<---------
ANAC46
--------->
MYB59
<---------
ARR14(2)
<---------
ANAC58
<---------
TOE2(3)
<-----------
ARR10
<---------
ANAC58
<------
MYB46(1)
<---------
ARR11(3)
<---------
WRKY18(1)
<------
NtERF2
<------
MYB83
--------->
ARR14(2)
>>>>>>>>>>
WRKY26
--------->
ALFIN1
<---------
AtMYB61
--------->
ARR11(3)
>>>>>>>>>>
WRKY43
------->
MYC2
<---------
MYB55(1)
--------->
GLK1(2)
>>>>>>>>>>
WRKY38
<-------
MYC3
<-----
<---------
MYB52(1)
--------->
ZAT2
--------->
WRKY38(1)
------->
MYC3
<------
--->
ZmHOX2a(2)
--------->
At4g35610
------->
TEIL
<-------
MYC2
<---------
LBD16
tccgtttggtttaggtaaaccggctgagtatcttcagtacgatttcgatggacttgaccaaaaccttgccaagaacgtggcgggtgacatcatcgggatc
16753300
--------->
MYB46(3)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
SPL7
<---------
LBD16
--------->
RAP2.6(2)
<---------
HSFB2a(1)
--------------->
AtSPL3
--------->
HSFC1(2)
--------->
At4g35610
<---------
HSFC1(2)
<---------
At4g35610
--------->
HSFB2a(1)
<------
NtERF2
---
--------->
GLK1(2)
------>
NtERF2
--------->
ZAT14
--------->
GLK1(2)
-----
--------->
ARR14(2)
--------->
ANAC46
--------->
MYB46(3)
<------
MYB46(1)
--------->
ARR11(3)
--------->
DEAR3(1)
<---------
ZAT14
<-------
TEIL
<------
<---------
ARR11(3)
<---------
DEAR3(1)
--------->
ZAT14
--------->
MYB52(1)
--------->
AtLEC2
<---------
ARR14(2)
<---------
ATERF1(1)
--------->
ANAC46
------>
ZmHOX2a(2)
<---------
At4g35610
<-----------
ARR10
--------->
DEAR3(1)
--------->
SPL7
<---------
ARR14(2)
<---------
ZAT2
<------
MYB83
<---------
GLK1(2)
--------->
DEAR3(2)
<---------
ZAT14
--------->
ARR14(2)
--------->
At4g35610
<-
-
ZmHOX2a(2)
<---------
ARR11(3)
------------------>
SPL14
<------
ZmHOX2a(2)
--------->
ZAT18
<-------
---
ARR11(3)
--------->
GLK1(1)
<-----------
HVH21
<----------
DOF2
<-----------
HVH21
------>
ZmHOX2a(2)
atccaagaatcttcggagatcaaaccgacgccgtttcagccgtacactgaagtctttgggatccaacggttcagagaatgtgagctgatccatggaaggt
16753400
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AGI:
At2g40100.1
Description:
LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding. Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCB4.3) [Arabidopsis Thaliana] (GB:Q9S7W1;GB:Q8L9J2); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96737.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)
Range:
from: 16752881
to: 16754478
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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