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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                           <---------At4g35610
             --------->MYB46(3)                             --------->DAG2
            ------>MYB83   <---------ZAT2                   <---------------AtSPL8
            ------>MYB46(1)--------->At4g35610             ---------->DOF2
        >>>>>>>>>>MYB80    --------->ZAT2               --------->YAB1              ---------->DOF2
---------WOX13(1)       ---------->DOF2                <---------YAB1        --------->AtMYB61
 
tgatttactcaaaccaaacaccaatttgaaagctgagaggcattttagttccagttatatgataaagtactaaacacaaaccaaaaccaaagtattggcc  16752500
                 <---------REM1(1)
            ---------->DOF2
        ------>MYB83
        ------>MYB46(1)
        --------->ANAC58  ------>MYB46(1)
        --------->ANAC46  ------>MYB83
        --------->ANAC58--------->AtMYB61
   <-----------GT1      <---------MYB59                      --------->ARR14(2)
 
taaaatataccaagccaaagttgtagaccaaactaaatgctggacttactactagacaatatcggaaacacgatttaagaggcattttgtagtcgattaa  16752600
                                                         <----------DOF2
                                                 <---------AHL20(1)
                                                 --------->AHL20(1)
                                                 --------->ARR11(3)
                                                 <---------ARR11(3)
                                               <---------ARR11(3)
               <----------DOF2             <---------MYB59                                  --------
    <---------HSFB2a(2)            <---------At4g35610 --------------->AGL15              --------->ANAC58
    <---------------AGL15          ----------->RAV1(2) <---------------AGL15  --------->GLK1(1)
    --------------->AGL15     =========================================MADS_MADS   ------>ZmHOX2a(1)
    --------->HSFB2a(2)       <-----------------AGL3<-----------GT1           <---------GLK1(1)
   <-----------------AGL2   <---------ARR14(2) <---------AHL20(1)        ---------->DOF2  --------->ANAC58
   ====================================================================MADS_MADS  --------->TOE1(3)
   <-----------------AGL3   --------->ARR14(2) --------->AHL20(1)   <----------ID1--------->TOE2(3)
 
tgggcttctataaatgggctttagggggacagaacttcaactgggaccaaaatattttctcttttgtgaaatcgacaaaagaaatccttaaaaacgaaag  16752700
                                            --------->ANAC58
                                          <------ZmHOX2a(1)
                                         <----------ID1
                                       <---------ICU4
                                    --------->YAB1
                                  ------>MYB83---------->DOF2
                                 --------->MYB55(1)                                           ------
                                <---------MYB46(2)                    ---------->DOF2    -----------
                 --------->TOE2(3)------>MYB46(1)             --------->TOE2(3)        ---------->DOF2
              --------->CCA1(1) --------->AtMYB61             <-----------TGA1     --------->RAP2.6(2)
              --------->RVE1(1) <---------MYB111(1)          --------->ANAC58      ----------->RAV1(1)
          --------->AHL20(2)    --------->MYB46(3)           --------->ANAC58   --------->ANAC58
      ---------->DOF2           <---------MYB111(2)      <---------ZAT14        --------->bZIP60(2)
  ---------->DOF2--------->TOE1(3)-------->P--------->ANAC58 --------->bZIP60(2)--------->ANAC58 ---
-->DOF2 ----------->GT1         <---------MYB55(2)       --------->ZAT18        --------->ANAC46----
 
aaaacaaaagaaagaaaataccttaaatgcagacacctaccataaggacgaaagagagagtgcaacgtcattagaaagtagccaggccacaaaagaaaaa  16752800
                          <---------DOF5.7(2)
                     <------ZmHOX2a(1)
                  <-----------RAV1(2)                                              <---------YAB1
                --------->YAB1      --------->CCA1(2)                           <---------YAB1
---------->DOF2<---------ATHB12   --------->YAB1                             <---------YAB1
---->DOF2     ------>MYB83--------->MYB52(1)                             --------->TOE2(3)
>GT1          ------>MYB46(1)    ----------->ARR10               <-----------GT1*TSS
-------->GT1 --------->WOX13(1)  <---------TOE2(3)   <---------At5g28300----------->GT1
----->DAG2 ------------>CBF --------->ZAT6          <-----------GT1   --------->MYB52(1)
 
aggtaaagagagagaccaatcacaggagataacgctaagataaggcttcttacatttaccatcacatataacataacgttactattattctaaaatccaa  16752900
                                                                              --------->At4g35610
                                                                              --------->ZAT2
                                                                              <---------At4g35610
                                                                              <---------ZAT2
                                                                           --------->ZAT2
                                                                           <---------At4g35610
                                                                        <---------ZAT14
                                                                        --------->ZAT14
                                                    --------------->AGL15  <---------ZAT2
                                                    <---------------AGL15  --------->At4g35610
                                                   <-----------------AGL3 ----------->RAV1(1)
                                                  ------>MYB46(1)   <---------ALFIN1               <
                                                  ------>MYB83      --------->AtMYB61              -
                                                --------->MYB46(3) --------->MYB46(3)    <---------RVE1(1)
                       --------->YAB1           --------->AtMYB61--------->AtMYB61      <---------MYB52(1)
                      --------->ICU4         --------->ANAC46   --------->MYB46(3)   <-----------RAV1(2)
            <<<<<<<<<<<<<<<<<LFY         <-----------HVH21     -------->P =======================RAV
 
aaaaactatatgttataacattggaatcatcagtctctaagcagtatcacaccaactcaatatggctaccaccactgcagcagcagcctcaggtattttt  16753000
                                                                                        ---------->DOF2
                                                                                      <-------------
                                                                                     ------>NtERF2
              ------>ZmHOX2a(2)                                                     ------->GAMYB
             <------ZmHOX2a(2)                                                      --------->RAP2.6(2)
            --------->ARR14(3)                                                      --------->DEAR3(1)
            <---------ARR14(3)                                                      --------->DREB2C(2)
            <---------ARR14(2)                                                      --------->ANAC46
            --------->ARR14(2)                                                     --------->MYB46(3)
            <---------ARR11(3)                                                   <---------ALFIN1
            --------->ARR11(3) <--------P                                      <---------ATERF1(1)
     <---------ARR14(2)       <---------MYB52(1)                               ------>NtERF2
     --------->ARR14(2)  <---------ARR14(2)                                   <---------TCP20
   --------->LBD16       --------->ARR14(2)                                   --------->PCF2
 <---------LBD16------>ZmHOX2a(1)<------MYB83  --------->ARR14(2)             <---------TCP16(1)
 ======================HOX2a_HOX2a      --------->ANAC46                      <---------ARR14(2)
 ------>ZmHOX2a(2)    --------->HSFB2a(2)      <---------ARR14(2)        --------->MYB52(1)
=======================HOX2a_HOX2a      --------->ANAC58     <---------ANAC46 --------->ARR14(2)
<------ZmHOX2a(2)     <---------HSFB2a(2)  <---------LBD16   <---------HSFB2a(2)<---------ABI4(2) --
---------ARR14(2)    <---------LBD16    --------->ANAC58    <---------LBD16 <---------ATERF1(1)   --
-------->ARR14(2)  <---------AGP1<------MYB46(1)      <-------TEIL ---------->DOF2<---------ATERF1(1)
 
gggatccggattcaagatcctagacctggaaccggtagggtccaagcccggttcgggttcagtttcggaaaaaagaaaccggctccaccgccaaagaaat  16753100
                                                    <------NtERF2
                                                    <---------LBD16
                                                   --------->LBD16
                                                   --------->MYB52(1)
                                                   ------>NtERF2
                                                  --------->ANAC46
                                                 --------->MYB46(3)
                                           ------>NtERF2
                                         <------NtERF2         <------MYB46(1)
                                         --------->RAP2.3(1)   <---------SPL7
                                         --------->RRTF1(1)    <------MYB83
                                        <---------ATERF1(1)  <--------P
                                        ------>NtERF2--------->RAP2.3(2)
                                        --------->LBD16    --------->ATHB12
   <------MYB83                        --------->ANAC46<------NtERF2
   <------MYB46(1)                     <---------DEAR3(1)  <---------MYB46(3)
   <---------At4g35610                 --------->LBD16--------->LBD16  ------>ZmHOX2a(2)
   --------->At4g35610                --------->LBD16--------->RAP2.6(2)      ------>ZmHOX2a(2)
  --------->MYB59                     <---------LBD16--------->LBD16  <------ZmHOX2a(2)
--------WRI1                    <------MYB46(1)--------->ARR14(2)    <---------ARR14(2)   <---------ARR14(2)
------->ANAC58                  <------MYB83<------NtERF2 <---------AtMYB61--------->ATHB12      ---
------->ANAC58                 --------->MYB59 <---------ARR14(2)    --------->ARR14(2)   --------->ARR14(2)
 
caaggcaggtccaagacgatggagacagactagtttggttccccggcgcaaacccgccggaatggttggacggatcgatgatcggagaccgtggatttga  16753200
                                                                                   --------->TGA2(1)
                                                                                   --------->bZIP60(1)
                                                                                   <---------TGA2(1)
                                                                                   <---------bZIP60(1)
                                                                                ----------->HVH21
                                                                               <-----------HVH21
                                                                              <------NtERF2
                                                                              --------->At4g35610
                                                                              <---------At4g35610
                                                                              <-------GAMYB
                                                                              ----------->GT1
                                                                             --------->MYB55(2)
                                                                             <---------MYB46(3)
                                                                            <---------RAP2.6(2)
        <---------TOE1(3)     --------------->AtSPL3                        <---------ANAC46
        --------->MYB59  <---------ARR14(2)                                 <---------ANAC58
        <---------TOE2(3)<-----------ARR10                                  <---------ANAC58
   <------MYB46(1)       <---------ARR11(3)        <---------WRKY18(1)     <------NtERF2
   <------MYB83          --------->ARR14(2)        >>>>>>>>>>WRKY26      --------->ALFIN1
  <---------AtMYB61      --------->ARR11(3)        >>>>>>>>>>WRKY43     ------->MYC2
 <---------MYB55(1)      --------->GLK1(2)         >>>>>>>>>>WRKY38     <-------MYC3          <-----
<---------MYB52(1)--------->ZAT2                  --------->WRKY38(1)   ------->MYC3         <------
--->ZmHOX2a(2)    --------->At4g35610          ------->TEIL             <-------MYC2     <---------LBD16
 
tccgtttggtttaggtaaaccggctgagtatcttcagtacgatttcgatggacttgaccaaaaccttgccaagaacgtggcgggtgacatcatcgggatc  16753300
                    --------->MYB46(3)
               <------ZmHOX2a(2)
              --------->ARR11(3)     <---------SPL7
        <---------LBD16             --------->RAP2.6(2)
     <---------HSFB2a(1)           --------------->AtSPL3
     --------->HSFC1(2)           --------->At4g35610
     <---------HSFC1(2)           <---------At4g35610
     --------->HSFB2a(1)  <------NtERF2                                                          ---
    --------->GLK1(2)    ------>NtERF2 --------->ZAT14                   --------->GLK1(2)     -----
    --------->ARR14(2)  --------->ANAC46                  --------->MYB46(3)                 <------MYB46(1)
    --------->ARR11(3)  --------->DEAR3(1)  <---------ZAT14       <-------TEIL               <------
    <---------ARR11(3)  <---------DEAR3(1)  --------->ZAT14 --------->MYB52(1)          --------->AtLEC2
    <---------ARR14(2)<---------ATERF1(1) --------->ANAC46------>ZmHOX2a(2)    <---------At4g35610
    <-----------ARR10--------->DEAR3(1)--------->SPL7   <---------ARR14(2)     <---------ZAT2<------MYB83
   <---------GLK1(2)--------->DEAR3(2) <---------ZAT14  --------->ARR14(2)     --------->At4g35610<-
-ZmHOX2a(2)   <---------ARR11(3) ------------------>SPL14<------ZmHOX2a(2)   --------->ZAT18<-------
---ARR11(3)  --------->GLK1(1)<-----------HVH21   <----------DOF2<-----------HVH21   ------>ZmHOX2a(2)
 
atccaagaatcttcggagatcaaaccgacgccgtttcagccgtacactgaagtctttgggatccaacggttcagagaatgtgagctgatccatggaaggt  16753400
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AGI:  At2g40100.1   
Description:  LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding. Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCB4.3) [Arabidopsis Thaliana] (GB:Q9S7W1;GB:Q8L9J2); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96737.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)
Range:  from: 16752881    to: 16754478    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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