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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---
<--
<---
----
<---
-----
<------
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
-------
<---------
AHL20(2)
<-----------
GT1
<------
--------->
ATHB51
<---------
YAB1
-------
<---------
At5g28300
<---------
YAB1
--------->
ARR11(3)
<------
<------
ZmHOX2a(2)
<---------
MYB52(1)
<---------
GLK1(2)
<-------
--------->
ARR14(2)
<----------
DOF2
--------->
ICU4
<---------
ARR11(3)
<-------
<---------
ARR14(2)
<---------
MYB52(1)
--------->
AHL20(2)
--------->
LBD16
<-------
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ICU4
--------->
ANAC46
---------
---------
GT1
<-----------
GT1
<-----------
GT1
<---------
LBD16
--------->
YAB1
-
AHL20(2)
--------------------->
WRI1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
ttacaagtcgatccacttagttcttaccgtttttttggtataaccattattttataaaacatcgttcccgctagatttttatcgcatcaaacatagcgta
16721200
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ANAC58
--------->
ANAC58
--------->
MYB52(1)
------------>
AGL15
-------------
AGL15
--------------
AGL1
------------->
AGL2
--------------
AGL3
---->
SPL7
---
SPL7
--------->
MYB52(1)
-->
ZAT14
---
ZAT18
-->
ZAT18
---
ZAT14
<-----
--
ANAC46
<------
ZmHOX2a(2)
<---------
ANAC58
<------
--
ANAC58
<-----------
HVH21
<------
ZmHOX2a(2)
<---------
ANAC58
<-------
--
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(s)
<-----------
GT1
<---------
ARR14(2)
<-------
------>
AtSPL8
<---------
ANAC58
--------->
ARR14(2)
--------->
AHL20(2)
x
smallRNA(se3)
<---------
ANAC58
--------->
ANAC46
--------->
AHL20(2)
<---------
AHL20(2)
ctacaaacggaaacggtcatctatggcgatcgatcaaatatacaacaccaaaatcgaatccaaaaaatagtttacttgaagtatttatatgttttgcttc
16721300
<-------
GAMYB
------>
ZmHOX2a(1)
--------->
MYB111(2)
<----------
DOF2
<---------
MYB46(3)
----
ZAT14
--------->
TOE2(3)
<---------
MYB46(3)
----
DOF2
<---------
GLK1(1)
<---------
ATHB12
<
--
ANAC58
--------->
GLK1(1)
--------->
DAG2
--------->
MYB55(2)
----------->
GT1
--
ANAC58
<---------
TOE2(3)
---------->
DOF2
<--------
P
--------->
YAB1
<-----
actgctaattctatggttttgaaatcctttattcttctcaaaaaaaaaaaaagtttgtcaatggttgttgacatggtcttgcataatatgtggataaata
16721400
<---------
ICU4
<---------
YAB1
--------->
ICU4
--------->
YAB1
<------------
CBF
<---------
ICU4
<---------
YAB1
<---------
ICU4
<---------
AHL20(2)
-
<--------
HAHB4
<---------
ARR14(2)
--------->
AHL20(2)
--
--------->
YAB1
--------->
ARR14(2)
--------->
AHL20(2)
<---------
YAB1
<---------
ATHB12
<----------
TaMYB80
----------->
GT1
<---------
AHL20(2)
<-----------
GT1
--------->
ATHB12
<---------
YAB1
---------->
DOF2
<----------
DOF2
<-
------------------------
ANAC81
<---------
ZAT6
--------->
AHL20(2)
<---------
DAG2
<-----
----
AHL20(2)
--------->
YAB1
--------->
KAN4(2)
<---------------
AGL15
<-----------
GT1
------
tttgttttaatcattttcatcatcattgcatattcccaagtgttatcaattgtttgacaaataaagaaaaattaaaattgatacctttttattttagtta
16721500
--------->
AtLEC2
--------->
ANAC58
--------->
ANAC58
<---------
ANAC58
<---------
ARR11(3)
----------->
GT1
<---------
ANAC58
<---------
At4g35610
<-----------
GT1
<---------
AtLEC2
--------->
At4g35610
--------->
MYB52(1)
<----------
DOF2
<---------
ZAT2
<---------
GLK1(2)
-------->
YAB1
<---------
AHL20(1)
--------->
ANAC58
--------->
ARR11(3)
------->
AHL20(2)
---------->
ID1
---------->
DOF2
<----------
ID1
--------
AHL20(2)
<-----------
GT1
<-----------
TBP
<---------
ZAT14
<---------
ARR11(3)
----
AHL20(2)
--------->
ARR11(3)
<-----------
RAV1(1)
--------->
ZAT2
>>>>>>>>>
TBF1
---
--->
AHL20(2)
--------->
AHL20(1)
------------>
CBF
--------->
ANAC58
*
TSS
---------->
DOF2
----
attaataacgaaactgaaaatatttctccctttgcatgcaatgtgggttttaaagacggaagctgaagagt
gaagaagaacaaaagatttttgagagaga
16721600
--------->
LBD16
<------
NtERF2
------>
NtERF2
--------->
ANAC58
--------->
ZAT18
--------->
DAG2
---------->
DOF2
--------->
ANAC58
<---------
TOE2(3)
--------->
ANAC58
<----------
DOF2
<----------
DOF2
--------->
ANAC46
<--------
<---------
ZAT6
--------->
ANAC46
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
GLK1(1)
------>
DAG2
--------->
ANAC58
<---------------
AGL15
<---------
GLK1(1)
------>
DOF2
--------->
ANAC58
--------------->
AGL15
<-----------
GT1
<--------
aaagtagagtcactccaaaattgttctctcgcaatcttctttctcggtttcctcttttaagaaaaagtccgccattttcactctcactcagatttcttcc
16721700
<---------
At4g35610
--------->
At4g35610
--------->
ZAT2
----------->
RAV1(2)
<---------
ZAT2
------->
TEIL
<---------
MYB52(1)
--------->
ANAC58
<---------
ANAC58
----------------->
AGL1
<---------
ANAC58
<---------
ARR14(2)
--------->
ANAC46
--------->
At4g35610
<----------
DOF2
<------
ZmHOX2a(1)
--------->
ANAC58
---
----------->
RAV1(2)
--------->
LBD16
<---------
TOE2(3)
<---------
ARR14(2)
<---
<---------
At4g35610
<---------
At4g35610
<-------
GAMYB
<-----------
HVH21
<---
--------->
ZAT2
--------->
ANAC46
--------->
LBD16
----------->
GT1
<---
-
ANAC58
<---------
LBD16
<-----------------
AGL1
--------->
ARR14(2)
------
-
ANAC58
<-----------
GT1
<---------
LBD16
--------->
MYB52(1)
--------->
YAB1
ctcttctcacctgcaaaaacccttgtttcccgctgtttcgtttcttctccggttgaggaaccaaaacgggtcaaatacgcagctgaatcatcgaattctt
16721800
--------->
ALFIN1
--------->
ARR11(3)
--------->
ALFIN1
------>
MYB46(1)
---------->
DOF2
--------->
ATERF1(1)
--------->
ANAC58
--------->
LBD16
<---------
ANAC46
--------->
ALFIN1
--------->
ANAC58
--------->
LBD16
--------->
LBD16
--------->
ATERF1(1)
--------->
ANAC46
--------->
HSFB2a(2)
------>
NtERF2
--------->
ATERF1(1)
<-----------
GT1
<----------
DOF2
<---------
HSFB2a(2)
--------->
DEAR3(1)
--------->
ALFIN1
------>
ANAC55(2)
<---------
YAB1
<---------
LBD16
--------->
YAB1
--------->
ALFIN1
------
TOE2(2)
------>
MYB83
<---------
ANAC46
<---------
ICU4
--------->
ATERF1(1)
------
TOE2(3)
<---------
MYB59
<---------
HSFB2a(2)
--------->
ANAC46
--------->
ALFIN1
------
TOE1(2)
--------->
MYB46(3)
--------->
HSFB2a(2)
<---------
YAB1
<---------
ANAC46
--------------->
WRI1
<---------
CCA1(2)
<---------
LBD16
<------
ZmHOX2a(2)
<---------
LBD16
-
ag
gtattttcgtcttacccaactcttatctttagatgtttttccgggaaaagagctcgatcatgactccgccgtgtttttttttgggggggggggggttt
16721900
<---------
ANAC46
--------->
ZAT18
--------->
ZAT14
<---------
RVE1(1)
--------->
ZAT6
--------->
ARR14(2)
<---------
ANAC46
<------
MYB46(1)
<---------
GLK1(2)
--------->
At4g35610
<-
<------
MYB83
<---------
ARR14(2)
<---------
ZAT2
---
-------->
ANAC46
<---------
REM1(1)
---------->
DOF2
<---------
ZAT14
<---------
At4g35610
--------
ctccgaaatgggtttcaaatgtaggttactctaggtttgaaagttcggattttttggttcactgtgtgttactacagcttcgattttgtgtaaacgagta
16722000
<----------
DOF2
--------->
ARR14(2)
<---------
ARR11(3)
------->
TEIL
--------->
CCA1(2)
--------->
ARR11(3)
<---------
CCA1(2)
<---------
At4g35610
--------
AHL20(2)
<---------
ARR14(2)
--------->
At4g35610
------>
YAB1
<---------
GLK1(2)
---------->
DOF2
<----------
DOF2
<---------
ZAT18
--->
GT1
<----------
DOF2
--------->
ARR11(3)
<-----------
GT1
--------->
ZAT18
<------
taaaaattgtatcttttacagatttgagaacttgttcttcaaagacttgatttttctttgtatcaagttagtgagctcaaatgtctttgtttctctgttt
16722100
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AGI:
At2g40030.1
Description:
NRPD1b (nuclear RNA polymerase D 1b); DNA binding / DNA-directed RNA polymerase. similar to NRPD1a (NUCLEAR RNA POLYMERASE D 1A), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G63020.1); similar to DNA-directed RNA polymerase alpha subunit [Spinacia oleracea] (GB:AAX12374.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42832.1); similar to hypothetical protein OsJ_005256 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21773.1); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro d
Range:
from: 16721572
to: 16730661
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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