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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                 ---
                                                                                                 <--
                                                                                                <---
                                                                                                ----
                                                                                                <---
                                                                                               -----
                                                                                             <------
                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         -------
                                               <---------AHL20(2)          <-----------GT1   <------
                                           --------->ATHB51               <---------YAB1     -------
                     <---------At5g28300  <---------YAB1              --------->ARR11(3)     <------
       <------ZmHOX2a(2)                  <---------MYB52(1)          <---------GLK1(2)     <-------
      --------->ARR14(2)  <----------DOF2 --------->ICU4              <---------ARR11(3)    <-------
      <---------ARR14(2) <---------MYB52(1)--------->AHL20(2)    --------->LBD16            <-------
 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ICU4          --------->ANAC46           ---------
---------GT1        <-----------GT1  <-----------GT1           <---------LBD16         --------->YAB1
-AHL20(2)   --------------------->WRI1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxx
 
ttacaagtcgatccacttagttcttaccgtttttttggtataaccattattttataaaacatcgttcccgctagatttttatcgcatcaaacatagcgta  16721200
      <---------ARR14(2)
      --------->ARR14(2)
   --------->ANAC58
   --------->ANAC58
 --------->MYB52(1)
------------>AGL15
-------------AGL15
--------------AGL1
------------->AGL2
--------------AGL3
---->SPL7
---SPL7--------->MYB52(1)
-->ZAT14
---ZAT18
-->ZAT18
---ZAT14                                                                                      <-----
--ANAC46                 <------ZmHOX2a(2)                            <---------ANAC58       <------
--ANAC58   <-----------HVH21 <------ZmHOX2a(2)                        <---------ANAC58      <-------
--ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)<-----------GT1  <---------ARR14(2)                     <-------
------>AtSPL8         <---------ANAC58               --------->ARR14(2)          --------->AHL20(2)
xsmallRNA(se3)        <---------ANAC58--------->ANAC46     --------->AHL20(2)    <---------AHL20(2)
 
ctacaaacggaaacggtcatctatggcgatcgatcaaatatacaacaccaaaatcgaatccaaaaaatagtttacttgaagtatttatatgttttgcttc  16721300
                                                              <-------GAMYB
                       ------>ZmHOX2a(1)                     --------->MYB111(2)
                       <----------DOF2                       <---------MYB46(3)
----ZAT14             --------->TOE2(3)                   <---------MYB46(3)
----DOF2          <---------GLK1(1)                      <---------ATHB12                          <
--ANAC58          --------->GLK1(1)           --------->DAG2 --------->MYB55(2)        ----------->GT1
--ANAC58 <---------TOE2(3)                   ---------->DOF2<--------P       --------->YAB1   <-----
 
actgctaattctatggttttgaaatcctttattcttctcaaaaaaaaaaaaagtttgtcaatggttgttgacatggtcttgcataatatgtggataaata  16721400
                   <---------ICU4
                  <---------YAB1
                  --------->ICU4
                --------->YAB1                                          <------------CBF
                <---------ICU4                                        <---------YAB1
       <---------ICU4                                                <---------AHL20(2)            -
       <--------HAHB4      <---------ARR14(2)                        --------->AHL20(2)           --
       --------->YAB1      --------->ARR14(2)                       --------->AHL20(2) <---------YAB1
      <---------ATHB12    <----------TaMYB80                ----------->GT1          <---------AHL20(2)
    <-----------GT1--------->ATHB12      <---------YAB1   ---------->DOF2        <----------DOF2  <-
------------------------ANAC81      <---------ZAT6       --------->AHL20(2)     <---------DAG2<-----
----AHL20(2) --------->YAB1--------->KAN4(2)         <---------------AGL15   <-----------GT1  ------
 
tttgttttaatcattttcatcatcattgcatattcccaagtgttatcaattgtttgacaaataaagaaaaattaaaattgatacctttttattttagtta  16721500
                                --------->AtLEC2
                                --------->ANAC58
                                --------->ANAC58
                              <---------ANAC58
               <---------ARR11(3)
          ----------->GT1     <---------ANAC58           <---------At4g35610
  <-----------GT1             <---------AtLEC2           --------->At4g35610
  --------->MYB52(1)      <----------DOF2                <---------ZAT2           <---------GLK1(2)
-------->YAB1  <---------AHL20(1)                   --------->ANAC58              --------->ARR11(3)
------->AHL20(2)      ---------->ID1           ---------->DOF2           <----------ID1
--------AHL20(2)     <-----------GT1        <-----------TBP        <---------ZAT14<---------ARR11(3)
----AHL20(2)   --------->ARR11(3)    <-----------RAV1(1) --------->ZAT2>>>>>>>>>TBF1             ---
--->AHL20(2)   --------->AHL20(1)------------>CBF   --------->ANAC58   *TSS   ---------->DOF2   ----
 
attaataacgaaactgaaaatatttctccctttgcatgcaatgtgggttttaaagacggaagctgaagagtgaagaagaacaaaagatttttgagagaga  16721600
                                                                  --------->LBD16
                                                                  <------NtERF2
                                                                  ------>NtERF2
                                                                 --------->ANAC58
                                                                --------->ZAT18
                                                            --------->DAG2
                                                           ---------->DOF2
        --------->ANAC58                               <---------TOE2(3)
        --------->ANAC58           <----------DOF2<----------DOF2--------->ANAC46          <--------
   <---------ZAT6        --------->ANAC46       ------>ZmHOX2a(1)--------->ANAC58       --------->GLK1(1)
------>DAG2              --------->ANAC58       <---------------AGL15                   <---------GLK1(1)
------>DOF2              --------->ANAC58       --------------->AGL15     <-----------GT1  <--------
 
aaagtagagtcactccaaaattgttctctcgcaatcttctttctcggtttcctcttttaagaaaaagtccgccattttcactctcactcagatttcttcc  16721700
                                                                             <---------At4g35610
                                                                             --------->At4g35610
                                                                             --------->ZAT2
                                                                             ----------->RAV1(2)
                                                                             <---------ZAT2
                                                                            ------->TEIL
                                    <---------MYB52(1)                   --------->ANAC58
                                  <---------ANAC58      ----------------->AGL1
                                  <---------ANAC58    <---------ARR14(2) --------->ANAC46
     --------->At4g35610     <----------DOF2         <------ZmHOX2a(1)   --------->ANAC58        ---
     ----------->RAV1(2)   --------->LBD16         <---------TOE2(3)  <---------ARR14(2)        <---
     <---------At4g35610   <---------At4g35610 <-------GAMYB     <-----------HVH21              <---
     --------->ZAT2       --------->ANAC46    --------->LBD16   ----------->GT1                 <---
-ANAC58                  <---------LBD16    <-----------------AGL1    --------->ARR14(2)      ------
-ANAC58               <-----------GT1       <---------LBD16 --------->MYB52(1)      --------->YAB1
 
ctcttctcacctgcaaaaacccttgtttcccgctgtttcgtttcttctccggttgaggaaccaaaacgggtcaaatacgcagctgaatcatcgaattctt  16721800
                                                                                        --------->ALFIN1
                                                --------->ARR11(3)                     --------->ALFIN1
               ------>MYB46(1)              ---------->DOF2                            --------->ATERF1(1)
            --------->ANAC58             --------->LBD16           <---------ANAC46   --------->ALFIN1
            --------->ANAC58            --------->LBD16          --------->LBD16      --------->ATERF1(1)
            --------->ANAC46            --------->HSFB2a(2)      ------>NtERF2       --------->ATERF1(1)
   <-----------GT1       <----------DOF2<---------HSFB2a(2)     --------->DEAR3(1)   --------->ALFIN1
------>ANAC55(2)       <---------YAB1  <---------LBD16  --------->YAB1              --------->ALFIN1
------TOE2(2)  ------>MYB83            <---------ANAC46 <---------ICU4              --------->ATERF1(1)
------TOE2(3)<---------MYB59           <---------HSFB2a(2)      --------->ANAC46   --------->ALFIN1
------TOE1(2)--------->MYB46(3)        --------->HSFB2a(2)<---------YAB1          <---------ANAC46
--------------->WRI1 <---------CCA1(2)<---------LBD16  <------ZmHOX2a(2)        <---------LBD16    -
 
aggtattttcgtcttacccaactcttatctttagatgtttttccgggaaaagagctcgatcatgactccgccgtgtttttttttgggggggggggggttt  16721900
                                                            <---------ANAC46
                                                      --------->ZAT18
                                                      --------->ZAT14
                                             <---------RVE1(1)
                        --------->ZAT6      --------->ARR14(2)                    <---------ANAC46
                   <------MYB46(1)          <---------GLK1(2)           --------->At4g35610       <-
                   <------MYB83             <---------ARR14(2)          <---------ZAT2           ---
-------->ANAC46<---------REM1(1)   ---------->DOF2    <---------ZAT14   <---------At4g35610 --------
 
ctccgaaatgggtttcaaatgtaggttactctaggtttgaaagttcggattttttggttcactgtgtgttactacagcttcgattttgtgtaaacgagta  16722000
                                                                                 <----------DOF2
                 --------->ARR14(2)                                           <---------ARR11(3)
      ------->TEIL--------->CCA1(2)                                           --------->ARR11(3)
     <---------CCA1(2)                                                <---------At4g35610
--------AHL20(2) <---------ARR14(2)                                   --------->At4g35610
------>YAB1      <---------GLK1(2)  ---------->DOF2 <----------DOF2 <---------ZAT18
--->GT1  <----------DOF2--------->ARR11(3)       <-----------GT1    --------->ZAT18          <------
 
taaaaattgtatcttttacagatttgagaacttgttcttcaaagacttgatttttctttgtatcaagttagtgagctcaaatgtctttgtttctctgttt  16722100
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AGI:  At2g40030.1   
Description:  NRPD1b (nuclear RNA polymerase D 1b); DNA binding / DNA-directed RNA polymerase. similar to NRPD1a (NUCLEAR RNA POLYMERASE D 1A), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G63020.1); similar to DNA-directed RNA polymerase alpha subunit [Spinacia oleracea] (GB:AAX12374.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42832.1); similar to hypothetical protein OsJ_005256 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21773.1); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro d
Range:  from: 16721572    to: 16730661    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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