Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ---------->DOF2                                                               <--------------    --------->At4g35610               --------->CCA1(2)                               =============== ---------->DOF2                    <------ZmHOX2a(1)     --------->YAB1              --------------- ---->ANAC58                       ----------->GT1       <---------ATHB12            <---------ANAC58 ---->AtLEC2                    ---------->DOF2        --------->WOX13(1)            <---------ANAC58 ---->ANAC58              <---------HSFB2a(2)      ------->TEIL                    --------->ARR11(3) --->WOX13(1)             --------->HSFB2a(2)    <-------TEIL                --------->LBD16 ->WRKY18(1)              <---------HSFC1(1)<---------------------WRI1     <---------LBD16<---------REM1(1)   gcagaaagcagaaagtatcaattgaattcgagaaaaaaggatataatgcgatgcatccaatcaaaaaatccctgttctcagggaatttcttgttgtagaa  16690300                                                                                            <------ZmHOX2a(2)                                                                                    --------->ANAC58                                                                               --------->O2--------->ARR11(3)                                                                               <---------O2<---------ARR11(3)                                                                               --------->TGA1a                                                                               --------->ANAC58                                                                               --------->ANAC46                                                                               ===================MYC_MYB                                                                               --------->ANAC58                                                   --------->At4g35610        <---------LBD16                     --------->YAB1              ========================================MYC_MYB-----                    <---------YAB1               <--------P             ---------->DOF2   ------->GAMYB                  --------->YAB1              <---------TOE2(3)         =================bZIP_DOF   ----------->RAV1(1) <---------YAB1         <---------TOE1(3)       =============================HOX2a_HOX2a -AGL15       --------->MYB46(3)----------------->AGL3                ------>ZmHOX2a(1)--------->MYB52(1) =================================================MADS_MADS        ================================HOX2a_HOX2a >AGL15     ----------->RAV1(1) ----------------->AGL2             ------>ZmHOX2a(1)--------->ANAC58<   ttgagcaacaagagcaacaacgatgataatcgttcccaaaatcagtttgaggttgctcaatctcacatcctccttatagccacggctcgtaacgatctac  16690400                                              <---------ARR11(3)                                              --------->GLK1(2)                                              --------->ARR11(3)                                         ----------->GT1                                        --------->ANAC58                                   <---------ANAC58                                        --------->ANAC58                           <---------TOE2(3)        <-------TEIL               ------->GAMYB--------->TOE2(3)              <-----------HVH21      <---------GLK1(2)           --------->MYB46(3)                         <-------TEIL  <---------ANAC58 --------->YAB1                   <---------MYB52(2)                       <---------ARR14(2) ---->ANAC46                    --------->MYB52(1)     <---------HSFB2a(1) --------->ARR14(2)    ---- ---------ATHB12            <---------------------WRI1 --------->HSFB2a(1) <---------GLK1(2)<--------   gaatcatagattcacatatcagagaaatatggagcaacgaacaaggaaaatcttagaaaattcttacatcggagacggattcgtcaaggatgtgcttgat  16690500                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                          <----------                                         <--------P                                 --------->LBD16                                         <---------WOX13(1)                       ------>ZmHOX2a(2)                                        <---------ANAC58                         <------ZmHOX2a(2)                                        <---------ANAC58                        --------->ARR14(2)                <---------WOX13(1)      <-------GAMYB                        ------>ZmHOX2a(2)  -----     <---------MYB46(3)                <---------MYB46(3)                   <------ZmHOX2a(2)   -----    <---------AtMYB61                  --------->MYB52(2)                  <---------ARR14(2)   <----    --------->ALFIN1                   --------->MYB55(2)                  --------->ARR14(2)   <----  <---------MYB46(3)                   <------MYB83          ===========================HOX2a_HOX2a <---------AtMYB61                     <------MYB46(1)       ------>ZmHOX2a(1)  <---------ARR14(2)--- --------->ALFIN1                     <---------AtMYB61      ============================HOX2a_HOX2a -->ZmHOX2a(2) <---------GLK1(2)     <--------P              =======================HOX2a_HOX2a <---- --DOF2       --------->ATHB12     <-----------RAV1(1)       ======================HOX2a_HOX2a <-----   cgagtggtggtccaatagattggccttcttaacattcttgttggttgattctgtcttcttctcctccatggtgaacagatcggatccagataataccaga  16690600   <---------TOE2(3) ---ZmHOX2a(2) ----->GLK1(1) ---->ARR11(3)                                   <----------CDC5 -GT1                                           --------->At4g35610                                -- ---->ARR14(2)                      --------->ARR14(2)                                             -- ---->AGP1             --------->ANAC58         <---------At4g35610                                <- -----ARR14(2)         --------->ANAC58  <-----------GT1                            <------ZmHOX2a(1) -----ARR11(3) <---------HSFC1(2)   <---------ARR14(2)                           --------->HSFB2a(2) --->ZmHOX2a(2)--------->HSFC1(2)   <---------ARR11(3)                           <---------HSFB2a(2) -----AGP1     <---------HSFB2a(1)  <---------GLK1(2)               <---------TOE2(3)  <------ZmHOX2a(1) ----CCA1(2)   --------->HSFB2a(1)  --------->ARR11(3)     <------ZmHOX2a(1)    <---------TOE1(1)  <-   tctctaatgttcttcgaaaattcgaacgcagagtttcagattttcacgagcgctgagactaggagagactgatgtttttggttcgaggaggaagaagacg  16690700                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                 <---------ZAT2                                                                                 --------->ZAT2                                                                              <---------ANAC58                                                   <---------ANAC58    <------------CBF                                                   <---------ANAC46   <---------AHL20(2)                                                   <---------ANAC58  --------->AHL20(2)                                                <---------bZIP60(1)  <---------AHL20(2)             - ------->AHL20(1)                               --------->bZIP60(1)  --------->AHL20(1)             - ------->ARR11(3)                            <---------YAB1          <---------AHL20(1)    <---------TOE2(3) --------AHL20(1)                          --------->YAB1  <---------WOX13(1) <---------ANAC58      < --------ARR11(3) *TSS                    <---------YAB1<---------YAB1--------->ATHB12  <----------DOF2   atatattggatggagctagaagacgtttcagtcaaaactcgtttattatgatgtcgttttgatggatgaaatttattgggccttgctgggcttaatgtag  16690800        <---------ICU4                                >>>>>>>>>>WRKY63                           ----      <---------MYB52(2)                        <---------MYB52(1)               <---------GLK1(1)   <---------WRKY12                        <-----------GT1                       --------->GLK1(1) -------->ANAC58                     --------->AHL20(2)           --------->TOE2(3)  <----------DOF2 -------->ANAC58         <----------DOF2 <---------AHL20(2) --------->YAB1      <---------ARR11(3) <<<<<<<<<WRKY18        --------->TOE2(3)--------->AHL20(2)<---------YAB1       --------->ARR11(3)  <   tcaagtcaactaatgacacatctaaaccttttttgtcaactaattaaacccttatttgactattataaacttaaatgctgaagatttctttctattgaag  16690900           --------->ARR14(2)                                     <---------ICU4           --------->GLK1(2)                                  <---------YAB1           <---------ARR14(2)                        --------->HSFB2a(2)       <---------ICU4          --------->GLK1(1)                    --------->GLK1(2)  --------->YAB1     <------ZmHOX2a(1)          <---------GLK1(1)                    --------->ARR11(3)--------->ICU4--------->YAB1    ---------->DOF2                           <---------GLK1(2)--------->YAB1 --------->ICU4 ------>DOF2                    --------->GLK1(1)    <---------HSFB2a(2)      <---------ATHB12 ----------ID1        <----------DOF2     ---------->DOF2   <-----------GT1 --------->WOX13(1)  -----   aaagaacaaaggaaatctgccaaactttattcagatttcattactaaagaatcttgcagaaattacaataatcaattgcaatcatcaggaaatgaacaac  16691000                    <---------ATHB12                  --------->WOX13(1)                 --------->AHL20(2)                 <---------AHL20(2)              <--------HAHB4              <--------ATHB1              --------->YAB1              <---------ICU4                            --------->AHL20(2)              --------->ATHB51                          <---------AHL20(2)             <---------ATHB51                          <---------AHL20(2)             --------->ICU4                         <---------AHL20(2)             <---------YAB1                        <---------YAB1           --------->YAB1                <---------AHL20(2)                <-------TEIL        <---------ZAT6 --------->ANAC58 --------->AHL20(2)              <---------ANAC58<---------ANAC46        ----------->GT1--------->ANAC58 <---------AHL20(2)       <---------MYB111(1)    <---------ANAC58 ---->MYB46(3)-------->HAHB4  --------->ATHB12    <---------AHL20(2)    <---------ANAC58<---------ANAC58   aatcccaatagtgtaataattaatcaagaaaactattggaaatttaatctatttttatttatttctaactactagcgttcattcaagaaggcttggactt  16691100                                                                               --------->At4g35610                                                                               <---------At4g35610                                                                            --------->ZAT2                                                                            <---------At4g35610                                                            --------->YAB1  <---------ZAT2                                                      <---------ANAC58      --------->At4g35610                                         ----------->HVH21  <---------ICU4 ----------->RAV1(1)                             --------->At4g35610<---------ARR11(3)       --------->LBD16                           --------->MYB46(3) --------->ANAC58       <---------GLK1(2)              <---------ANAC58    --------->At4g35610 <---------ANAC58  --------->DEAR3(1)       ----              <---------ANAC58    --------->ZAT2--------->ARR11(3)   --------->ARR14(2)     <--------              <---------ANAC46    <---------At4g35610 --------->TOE2(3)--------->MYB46(3)   <--------        <---------ZAT6   ----------->RAV1(1)  --------->ANAC58       <---------ARR14(2)     ---------   gacttagctagaggtagcgtttgagagcaacagcttagctcccttgacaagctcttccttgatcatgaacagaaccgcagcagctaaaacgctctgcaca  16691200  Previous    Next  AGI:  At2g39960.1    Description:  microsomal signal peptidase 25 kDa subunit, putative (SPC25). Identical to Probable signal peptidase complex subunit 2 [Arabidopsis Thaliana] (GB:P58684); similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT4G04200.1); similar to unknown [Populus trichocarpa] (GB:ABK95467.1); contains InterPro domain Microsomal signal peptidase 25 kDa subunit; (InterPro:IPR009582) Range:  from: 16688552    to: 16690718    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g39970.1    Description:  peroxisomal membrane protein (PMP36). similar to ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1), binding / folic acid transporter [Arabidopsis thaliana] (TAIR:AT5G66380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69026.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) Range:  from: 16690910    to: 16693787    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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