Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ZAT14                                                                              <---------ZAT14                                                                             --------->ALFIN1                                                                       <------NtERF2                                                                       --------->ATERF1(1)                                                                      <---------ATERF1(1)                                                     ------>NtERF2   <---------ANAC58                      <---------TOE1(3)    <---------HSFB2a(2)   <-----------RAV1(2)    --------->At4g35610    <---------WRKY18(1)   ----------->HVH21   <---------DEAR3(1) <---------At4g35610  <---------TOE2(3)    --------->HSFB2a(2)  <------ZmHOX2a(2)  ================== <---------ZAT2   <----------DOF2         <---------LBD16      <-----------HVH21   ---------->DOF2 <- ----->YAB1 <---------ANAC58      --------->AtMYB61 <---------DEAR3(1)<-----------HVH21            -- ->AHL20(2) <---------ANAC58 <---------At4g35610--------->DEAR3(2)   <---------ANAC58         <------   catagctgctctaggcttgcctttaagcttgagcgacctcaagttcgggaatcgacggctaagacgatcaggcgtcgcagtgtagcaaagcgccatagtc  16682400                                             ---------->DOF2                                           --------->ANAC58                                           --------->ANAC58            <-----------HVH21                                         --------->ANAC46           <---------ANAC46                                         --------->ANAC58           <---------ANAC58                                         --------->ANAC58           <---------ANAC58                                     ----------->RAV1(1)         <----------DOF2                                     <-----------HVH21        --------->ARR11(3)        --------->O2                --------->ANAC46          <---------ARR11(3)        ================================================bZIP_DOF------>ZmHOX2a(2)        --------->TGA1a             <---------ETT(1)    <---------ARR14(2) =================bZIP_DOF          ----------->HVH21   --------->ARR14(2) ------MYC3            --------->YAB1------>NtERF2     --------->ARR14(2)  <-------GAMYB            - ----->MYC3         --------->WOX13(1) <---------ALFIN1<---------ARR14(2) ----------->GT1  <---------ANAC58 -----HVH21 <---------LBD16  --------->MYB46(3) ---------->DOF2<------ZmHOX2a(2)           <---------ANAC58   acatgctctctcgtctcggaatcaatcttgaaccatctccgacacaccaaagaagccgaatcgcgatctttcgggtcagttatataggtcatgacttgct  16682500                                                                  ------>ZmHOX2a(2)                                                                  ----------->GT1                                                                 <------ZmHOX2a(2)                         --------->At4g35610                    --------->ARR14(2)                         <---------At4g35610            ================HOX2a_HOX2a                         <---------ZAT2                 =================HOX2a_HOX2a                     --------->ANAC46                   ------>ZmHOX2a(1)              <-----------HVH21                       ------>ZmHOX2a(2)             --------->DEAR3(1)                      <------ZmHOX2a(2)             ------->GAMYB                          <---------ARR14(2)                              <            --------->MYB46(3)                      --------->ARR14(2)                           <---            <------------AtMYB77                    <---------ARR11(3)                           ----            --------->DEAR3(2)                      --------->ARR14(3)           ----------->GT1 ----         --------->MYB46(3)      <-----------GT1    --------->ARR11(3)         ---------->DOF2   ----   <---------bZIP60(1)   --------->ZAT2             <---------ARR14(3)    <----------ID1    ---------   --------->TGA2(1) --------->ANAC58              <------ZmHOX2a(1)    ------------------------>ANAC81   <---------TGA2(1) --------->ANAC58              =====================HOX2a_HOX2a        --------->TOE1(2)   --------->bZIP60(1)  ------->TEIL         <---------GLK1(1)  <---------ARR14(2)        <---------MYB52(2) ---------->HVH21 ----------->HVH21<-----------GT1 ======================HOX2a_HOX2a   <----------ID1   cgatgacatcatcaaccgtcgcgacgcagctcaatttacacctcttgatatcaggatcctccatcggatcgaaaaaaaaacaaaagaaaaaaacaaacga  16682600         --------->CCA1(2)                                               ----------->RAV1(1)        <---------ARR14(2)                                              ------->GAMYB        --------->ARR14(2)                                        --------->ANAC46        <---------GLK1(2)                                         --------->YAB1        --------->ARR11(1)                                        --------->ANAC55(1)       <---------HSFB2a(1)                                  --------->CCA1(2)      ----------->ARR10                                     <------ZmHOX2a(2) <---------HSFB2a(2)                                       --------->AGP1--------->MYB52(1) --------->HSFB2a(2)                                       --------->ARR14(2) ------>ZmHOX2a(1)                                         <-----------ARR10 --------->LBD16                ------>NtERF2              --------->ARR11(3) ---------LBD16             --------->DEAR3(1)             <---------ARR11(3) ------ARR14(2)             --------->TOE1(2)              <---------ARR14(2) ----->ARR14(2)             --------->TOE2(2)             --------->GLK1(1) ----->GLK1(2)             --------->DEAR3(2)             --------->At4g35610                     --- --->TEIL--------->ARR14(1)--------->MYB46(3)       <-----------HVH21  --------->MYB46(3)   --------- >MYB52(1)<-------TEIL   --------->MYB52(1)   <<<<<<<<<<GATA-1  <---------ALFIN1       ---------->DOF2   atcctggaaagattcgatttagagaagaaaccgacgacttcgaattgaaatcgaggtcgcagatccacacataaccaccagagtgagaagaaagaagtaa  16682700           --------->LBD16           ----------->GT1         <---------LBD16         ------>ZmHOX2a(2)        <------ZmHOX2a(2)        --------->CCA1(2)        --------->ARR14(1)       --------->ARR14(2)       --------->ARR11(1)       --------->AGP1       <---------ARR14(2)       <---------ARR11(3)     ----------->ARR10                                             <------ZmHOX2a(1)    <------ZmHOX2a(1)     <---------HSFB2a(1)                                    --------->ANAC58    --------->ARR14(2)     --------->HSFB2a(1)                                  --------->CCA1(2)     <---------ARR14(2) --   ---------->DOF2                                       --------->ARR14(2)    <------NtERF2      --- ------->DOF2                                            <---------ARR14(2)  <---------ANAC46  >>>>>> -->GT1--------->ARR11(3)                  --------->ALFIN1 --------->ANAC58<---------LBD16 >>>>>>>>>TBF1   gaaaggaaagatccggtgaatcggagaagactagagattgagagagtgagggagaagaagacacgcgtaggaagaagaggcggattgggaggaagaagaa  16682800                                                                 <---------YAB1                                       <---------YAB1          <--------HAHB4                                      --------->AHL20(1)       --------->YAB1                                   --------->AHL20(2)          <---------ICU4              <---------ETT(2)                                   --------->YAB1     --------->ALFIN1               <---------DOF5.7(2)                            <------MYB46(1)      <------ZmHOX2a(2)--------->ATHB51   --------->MYB52(1)                            ----------->GT1     --------->ARR11(3)<---------ICU4    --------->WRKY12  --------->ALFIN1          <------MYB83       ======================HOX2a_HOX2a    ----------->HVH21 ------->DAG2              --------->MYB59     <------ZmHOX2a(1) --------->ICU4--------->ZAT14 ------->DOF2             *TSS >>>>>>>>>GT-1 <---------TOE2(3)<---------YAB1 --------->ANAC46       < >>>TBF1               <---------YAB1 <---------AHL20(1)      <------ZmHOX2a(2)<---------ZAT14      -   gaaagtgggacgatggaatcaaattttgtttggttaataatatttttgaggatcaagtgggacgatcattatttcatacactgaagttgacggtcgagat  16682900                                                            --------->ANAC58                                                      <---------At4g35610                                                      --------->At4g35610                                                      <---------ZAT2                                                      --------->ZAT2                                                  ------>ZmHOX2a(2)                                                 <---------GLK1(1)                                                 --------->GLK1(1)                                                 <------ZmHOX2a(2)                                                --------->ARR14(2)                                                --------->ARR11(3)                                                <---------ARR14(2)                                                --------->AGP1          --------->YAB1                                                <-----------ARR10      <---------YAB1                                                <---------AGP1      <---------AHL20(2)                                                <---------ARR11(3)  <---------YAB1                                               <---------CCA1(2)   --------->YAB1                                               --------->At4g35610 --------->AHL20(2)           -----  ------>ZmHOX2a(2)                        <-----------HVH21--------->ANAC46                 -------- <------ZmHOX2a(2)               <---------ICU4<---------At4g35610 <---------AHL20(1)    ------>ZmHOX2a(2) ---------ARR11(3)        <----------DOF2 <---------MYB46(3)--------->ANAC58      <-----------GT1 -------->ARR11(3)     <-----------GT1   --------->ALFIN1 --------->REM1(1)      <---------AHL20(2) <   gcgatcttctctctacttctatgtttttcttttcatttttgcagtggtcagatctcagctacacgacaatattattagaatatttaactgatccaataag  16683000                                  --------------->AGL15                                  <---------------AGL15              <---------AHL20(2)                                  <----------DOF2                    <---------AHL20(1)                                  ===================================================================                               <-----------GT1                 --------->ANAC58                            <---------AHL20(2)                 --------->ANAC58                            --------->AHL20(2)       --------->TOE1(3)    --------->AHL20(2)                            --------->ATHB51         --------->TOE2(3)    <---------AHL20(2)       <---------AHL20(2)   <---------ICU4          ----------->RAV1(2)  --------->AHL20(2)      --------->AHL20(2)   --------->ICU4         <-----------GT1    --------->AHL20(2) ---->At4g35610         --------->AHL20(2)     --------->YAB1------>ZmHOX2a(1) -->DOF2                <---------AHL20(2)   <---------YAB1 --------->TOE2(3) ---------ANAC46       --------->AHL20(2)----------->GT1 --------->ARR14(2)   ctgtgtgatttattcgatggatagatttaattatttctttatagagtattaataacctgaatcctaagcaaaaaatttaaaaatactaaatactagtata  16683100             <---------DAG2             --------------->AGL15             <----------DOF2              <--------ATHB1            <---------ANAC58              <---------ICU4            <---------ANAC58              --------->YAB1         <--------P                      --------->ICU4        <---------ANAC58        --------->AHL20(2)        <-------GAMYB          --------->YAB1        <---------ANAC58      --------->AHL20(2)      <----------DOF2                               <       <---------MYB46(3) <---------AHL20(2)      <----------DOF2                                  <-    <----------DOF2       --------->AHL20(2)  <-----------GT1                                      --  <---------YAB1      ----------->GT1    <---------ATHB12                                         <-- ============================MADS_MADS   <---------ATHB51     ----------->GT1             <----------DOF2   tgttatctttggttgctttatatgtgattaaaataaaaatacaataattctcctttcttttgtaagataaaaattttctacagtattagtagcttttaat  16683200            <---------MYB46(3)                          <---------ARR11(3)        --------->DAG2           <---------------AtSPL8 <---------AHL20(1)       ---------->DOF2       <---------AHL20(2)         --------->AHL20(2) ------ZmHOX2a(1)            --------->AHL20(2)         --------->AHL20(1) ---------ID1             ------->TEIL        ----------->GT1 --------->GT1       <---------AtLEC2        <---------TOE2(3)            ------->TEIL -------TOE2(3)--------->WRKY38(1)           <---------YAB1<---------AHL20(2)   gaggaaaaaaaaagttgttgactgcatgaatttatatggtccataatatggttaactatatattatggaccatatgaatataagtatataacaaaaaact  16683300  Previous    Next  AGI:  At2g39940.1    Description:  COI1 (CORONATINE INSENSITIVE 1); ubiquitin-protein ligase. Identical to Coronatine-insensitive protein 1 (COI1) [Arabidopsis Thaliana] (GB:O04197); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to coronatine-insensitive 1 [Lycopersicon esculentum] (GB:AAR82925.1); similar to coronatine-insensitive 1 [Glycine max] (GB:AAZ66745.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69029.1); contains domain SSF52047 (SSF52047); contains domain PTHR23125 (PTHR23125); contains domain G3DSA:3.80.10.10 (G3DSA:3.80.10.10); contains domain PTHR23125:SF17 (PTHR231 Range:  from: 16679571    to: 16682826    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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