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% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                    XXXXXXXXXXXXXXXXXXXXX>MIR173
                                                              <---------ICU4
                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)
                                                             <xxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                             <---------YAB1
                                         ----------->GT1    <xxxxxxxxxxxxxxxxxsmallRNA(se3)
                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                      xxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                    --------->YAB1          xxxxxxxxxxxxxxxx>smallRNA(s)
                                   <---------YAB1           xxxxxxxxxxxxxxxx>smallRNA(i)
                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ANAC46
                            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ATHB12
                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(se3)
                    --------->ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx>smallRNA(s)
                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(i)
                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->YAB1
                <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------YAB1
                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx>smallRNA(i)
                xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
               <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)
               <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
               <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
               <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
               <xxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
               <xxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
               <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ANAC55(2)
              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC55(2)<xxxxxxxxxxxxxxxxxsmallRNA(fl3)
    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---
    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ----------->GT1      <---
 
tattgaacatcgtgtttcaaaatacacaagttcaaactataatcaagtgaatagtttaagtatcatcattcgcttggagagaaaaatcacaaaaccatgt  16547100
                                                               ----------->HVH21
                                                              <---------WOX13(1)
                                                          --------->LBD16
                                                          <-----------HVH21
                                                          --------->At5g28300
                                                         <---------ANAC58
                                                         --------->O2      <------MYB83
                                                         <---------ANAC58  <------MYB46(1)
                                                         <---------O2------->MYC2
                      <---------AHL20(2)                <------NtERF2<-------MYC2
                     --------->ICU4                   <---------ARR14(2)   ----------->GT1
                <---------ANAC46                     <------ZmHOX2a(1) --------->ATHB12
             --------->DEAR3(1)                      --------->ATERF1(1)<---------ANAC58
             ------->GAMYB                         --------->ALFIN1  <-------MYC3
         ---------->DOF2<---------YAB1   --------->MYB52(1)----------->HVH21
------ANAC58--------->MYB46(3)         ---------->DOF2--------->ARR14(2)<---------ANAC58
------ANAC58--------->DEAR3(2)<---------ZAT6      <------ZmHOX2a(1)  ------->MYC3
 
cgtttcaactcgtaaaccgccgtatttattctagtgaaaccaaaaaacagagaggaggagccgtgactgacacatgcttggtaacaaatccattgtatca  16547200
                   ------>MYB83
                   ------>MYB46(1)
                   -------->P
               >>>>>>>>>>MYB80
              <-----------GT1
          --------->TOE2(3)
         --------->YAB1                                ---------->DOF2
         <--------HAHB4                              --------->TOE2(3)
        <---------YAB1                             -------->P
      --------->YAB1                               ------>MYB46(1)
   <---------RVE1(1)                               ------>MYB83
   <---------CCA1(1)                              ------>MYB46(1)
  <---------ARR11(3)                              ------>MYB83
  --------->AHL20(1)                           --------->ANAC46            --------->YAB1
  --------->ARR11(3)                           --------->ANAC58            --------->ATHB12    <----
  <---------AHL20(1)  ----------->GT1          --------->ANAC58           <---------YAB1   ---------
 
tccaagatattatcattaaaccaacttgtaactcgtaaactcactcccaaacccaacctaaagctatagaagatgctatgataggctactcatagaaagg  16547300
                                                              ------>ZmHOX2a(2)
                                                              ===============================HOX2a_HOX2a
                                                            --------->ARR11(3)
                                                       ------->TEIL
                                                       <---------ARR14(2)                         <-
               <-----------HVH21                       --------->ARR14(2)                <---------GLK1(2)
           ------->TEIL                           ----------->RAV1(2)                    --------->ARR14(2)
       --------------->AtSPL3                     --------->At4g35610                    <---------ARR14(2)
       --------------->AtSPL8                     <---------At4g35610                  ----------->ARR10
       <---------------AtSPL3                     --------->ZAT2                      <------ZmHOX2a(1)
       <---------------AtSPL8         --------->GLK1(2)--------->GLK1(2)           <-----------RAV1(2)
     --------->YAB1      --------->CCA1(2)    --------->MYB52(1)                ----------->HVH21 --
--ZmHOX2a(1)  <----------DOF2    ----------->GT1--------->MYB46(3)        <---------ATHB12--------->GLK1(2)
->DOF2---------->DOF2   <----------ARF1  --------->WOX13(1) <---------ARR11(3) <-----------HVH21  --
 
actagctataaaagtacctttcagtgggatacaagatggagaatcaatctaacagctgaatctgatcttcgaaacccatcagtgtgacaggagattctgt  16547400
                                                                        <----------DOF2
                                                                        ============================
                                                                      ------>NtERF2
                                                                     <---------ANAC46
                                                                    --------->DEAR4(2)
                                                                    <------NtERF2
                                                                    --------->RAP2.3(1)
                                                                    --------->ATERF1(1)
                                                                   <---------ERF1
                                                                   <---------RAP2.3(1)
                                                                   <---------DEAR4(2)
                                                                   <---------RRTF1(1)
                                                                   <---------ATERF1(1)
                                                                   <---------RAP2.6(1)
                                                                   <---------ORA47(2)
                                                                  <---------RRTF1(3)
                                                                  <---------ATERF1(2)
                                                                  <---------DEAR3(1)
                                                                  <---------DREB2C(2)
                                                                  <---------RAP2.3(3)
                                                                  --------->ATERF1(2)
                                                             <---------ANAC58
                                                             <---------ANAC58
                                                            --------->ZAT2
                                                            <---------ZAT2 <---------YAB1
                <---------ZAT14                     <----------DOF2------>NtERF2
         --------->ANAC46                   <---------HSFB2a(2)   <---------RAP2.6(2)         *TSS<-
       ----------->RAV1(1)   ---------->DOF2--------->HSFB2a(2)   <---------RAP2.3(2)    ===========
--------At4g35610        <-----------GT1   <-----------GT1 <-----------ARR10             <----------DOF2
---->ZmHOX2a(1) --------->ZAT14  --------->ALFIN1------>ZmHOX2a(2)<---------RRTF1(2) ---------->ID1
------->At4g35610   <---------ZAT6     <----------DOF2     --------->ARR11(3)       <-----------GT1
 
cctctgaatccaacacaactatagtgtttcaccaaagtggctcttttctcgatctctttgcagagcttggcggcgcttatacttatttttctctttgttt  16547500
     --------->ANAC58
     --------->ANAC58
  ----------->HVH21
  --------->TGA2(2)
 <-----------TGA1
 <-----------HVH21
<<<<<<<<<<HY5
<---------bZIP60(1)
--------->bZIP60(2)                                                      <-----------GT1
--------->ANAC46                                                      --------->ARR14(2)
--------->O2                                                          <---------ARR14(2)
--------->ANAC55(2)                                           --------->LBD16
--------->bZIP60(1)                       <-----------TBP     <---------SPL7
<---------O2                          <------MYB83           <---------ANAC58
--------->TGA1a --------->MYB59       <---------ANAC46       <---------ANAC58
<---------TGA2(1)                     <------MYB46(1)        <---------ANAC46
--------->TGA2(1)            --------->YAB1                  <---------ANAC55(1)
<---------TGA1a <---------TOE2(3)     ----------->GT1        --------->ANAC55(2)
==========bZIP_DOF        <---------bZIP60(1)             <---------ARR14(2)             --------->AHL20(2)
----------GT1   <---------TOE1(3)    --------->MYB59      --------->ARR14(2)    <---------AHL20(2)
==========bZIP_DOF        --------->bZIP60(1)            --------->DOF5.7(2)<----------DOF2    -----
 
ttgacgtcacgactaggtttaggtttatgaagtcataagttgggtttatatatcaaaaacgtttccgtatgcaaattttcttttttattccaaaaaatat  16547600
                                                                                         <---------REM1(1)
                                                                                         --------->ALFIN1
                                                                                       <------MYB46(1)
                                                                                       <------MYB83
                                                                                      --------->MYB111(1)
                                                                                      --------->MYB111(2)
                                                                                      --------->MYB46(2)
                                                                                      <---------AtMYB61
                ----------->GT1                                                       --------->MYB59
              --------->ICU4                                                         <---------MYB55(1)
            <---------ICU4                   <----------DOF2                  ---------->DOF2-------
            --------->YAB1                 <---------ZAT2                  =========================
           --------->ICU4                  <---------At4g35610             <---------------AGL15
      <------MYB46(1)                      --------->ZAT2                  --------------->AGL15
      <------MYB83                         --------->At4g35610            <---------ANAC46   <------MYB46(1)
      ----------->GT1             <---------ANAC58                        <---------ANAC58   <------MYB83
  <---------ARR14(2)              <---------ANAC58                        <---------ANAC58 <--------P
------>GT1 <---------YAB1      <----------DOF2                       --------->ATHB12<--------P   --
 
gtgaatatttggttataattagtaaaatttgggcctttcttggcccagctttctctagtaaacaactcaacttcattgcttaaaagaggtaggtgtaggt  16547700
                                                                        ----------->GT1
                                                                  --------->WRKY18(1)
--------->ICU4                                           <---------------AGL15         --------->At4g35610
---->GT1 <-----------HVH21      ----------->HVH21       <-----------------AGL2         <---------At4g35610
=========================================================================MADS_MADS   <---------HSFB2a(2)
-------->DOF2        <-----------HVH21     ---------->DOF2 <---------YAB1    <-----------GT1     ---
 
gaaaagatgaaatgtcatcgaatgggtcagtctgtctgacactgtgcaaagcgttatggactatttttggtcaaacagttaaactatttcagaagaacaa  16547800
                                 --------->TGA2(2)
                                <-----------HVH21
                                <-----------TGA1
                               --------->TGA1a
                               --------->O2
                               <---------TGA1a
                               <---------O2
                               --------->ANAC58
                               --------->ANAC55(2)
                               --------->bZIP60(1)
                               <---------bZIP60(1)
                               --------->bZIP60(2)
                               --------->ANAC58
                               <---------ANAC55(2)                     <----------ID1
                          <---------GLK1(1)                            --------->ANAC58         ----
                   --------->ALFIN1      ------>NtERF2                 --------->ANAC58         ----
               <---------At5g28300      <---------ALFIN1          <---------ICU4                <---
            =============================bZIP_DOF                 --------->YAB1                <---
         --------->ARR11(3)    --------->ANAC55(1)               <---------YAB1                <----
         <---------ARR11(3)    --------->ANAC46    --------->GLK1(2)   --------->ANAC46     --------
------>YAB1 <----------DOF2  <---------DOF5.7(2)--------->ANAC46 --------->ICU4      <----------DOF2
 
tcgaaaccaagaggtctttacggtgatggagttcacgtcatggccacctctaagaaactgtgtttgtaattataacgccaagtctactctttttatcaga  16547900
                                                              ----------->HVH21
                 <---------MYB52(1)                         --------->TGA1a
                --------->LBD16                             ==========================bZIP_DOF
         <---------MYB52(1)<---------TGA1a                  =======================================MYC_MYB
        --------->At5g28300--------->O2                     <---------TGA1a
        <-------GAMYB      --------->ANAC55(2)              --------->O2
     --------->LBD16       ==================================MYC_MYB
     ------>NtERF2         ====================================MYC_MYB
   --------->MYB46(3)      <---------O2                     <---------O2
   ------>ZmHOX2a(2)       --------->TGA1a                  --------->ANAC55(2)
 <---------ARR14(2) --------->ANAC58                    --------->TOE2(3)
 --------->ARR14(2) --------->ANAC58                    --------->TOE1(3)
----->GLK1(2)   ------>NtERF2                         -------->P
----->ARR14(2) <---------LBD16                        ================MYC_MYB
------ARR14(2) <---------ETT(1)                      =================MYC_MYB              <--------
--------ARR10 --------->RAP2.6(3)                    ------->GAMYB                    ==============
-----GLK1(2)  <---------LBD16   <---------ANAC46    --------->MYB46(3)                <------------MYB.PH3(1)
->YAB1  =============================MYC_MYB        <---------MYB111(2)    ---------->DOF2 ---------
 
atctgatccgccgttattccggcaagtctcatgtgacttacattatcccttcttaacaacctcaagtgaccaaaaaacaaaagtcaataactgttttaat  16548000
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AGI:  At2g39681.1   
Description:  TAS2; other RNA
Range:  from: 16546462    to: 16547495    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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