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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
XXXXXXXXXXXXXXXXXXXXX>
MIR173
<---------
ICU4
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
YAB1
----------->
GT1
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ANAC46
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ATHB12
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ANAC46
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ANAC55(2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ANAC55(2)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
GT1
<---
tattgaacatcgtgtttcaaaatacacaagttcaaactataatcaagtgaatagtttaagtatcatcattcgcttggagagaaaaatcacaaaaccatgt
16547100
----------->
HVH21
<---------
WOX13(1)
--------->
LBD16
<-----------
HVH21
--------->
At5g28300
<---------
ANAC58
--------->
O2
<------
MYB83
<---------
ANAC58
<------
MYB46(1)
<---------
O2
------->
MYC2
<---------
AHL20(2)
<------
NtERF2
<-------
MYC2
--------->
ICU4
<---------
ARR14(2)
----------->
GT1
<---------
ANAC46
<------
ZmHOX2a(1)
--------->
ATHB12
--------->
DEAR3(1)
--------->
ATERF1(1)
<---------
ANAC58
------->
GAMYB
--------->
ALFIN1
<-------
MYC3
---------->
DOF2
<---------
YAB1
--------->
MYB52(1)
----------->
HVH21
------
ANAC58
--------->
MYB46(3)
---------->
DOF2
--------->
ARR14(2)
<---------
ANAC58
------
ANAC58
--------->
DEAR3(2)
<---------
ZAT6
<------
ZmHOX2a(1)
------->
MYC3
cgtttcaactcgtaaaccgccgtatttattctagtgaaaccaaaaaacagagaggaggagccgtgactgacacatgcttggtaacaaatccattgtatca
16547200
------>
MYB83
------>
MYB46(1)
-------->
P
>>>>>>>>>>
MYB80
<-----------
GT1
--------->
TOE2(3)
--------->
YAB1
---------->
DOF2
<--------
HAHB4
--------->
TOE2(3)
<---------
YAB1
-------->
P
--------->
YAB1
------>
MYB46(1)
<---------
RVE1(1)
------>
MYB83
<---------
CCA1(1)
------>
MYB46(1)
<---------
ARR11(3)
------>
MYB83
--------->
AHL20(1)
--------->
ANAC46
--------->
YAB1
--------->
ARR11(3)
--------->
ANAC58
--------->
ATHB12
<----
<---------
AHL20(1)
----------->
GT1
--------->
ANAC58
<---------
YAB1
---------
tccaagatattatcattaaaccaacttgtaactcgtaaactcactcccaaacccaacctaaagctatagaagatgctatgataggctactcatagaaagg
16547300
------>
ZmHOX2a(2)
===============================
HOX2a_HOX2a
--------->
ARR11(3)
------->
TEIL
<---------
ARR14(2)
<-
<-----------
HVH21
--------->
ARR14(2)
<---------
GLK1(2)
------->
TEIL
----------->
RAV1(2)
--------->
ARR14(2)
--------------->
AtSPL3
--------->
At4g35610
<---------
ARR14(2)
--------------->
AtSPL8
<---------
At4g35610
----------->
ARR10
<---------------
AtSPL3
--------->
ZAT2
<------
ZmHOX2a(1)
<---------------
AtSPL8
--------->
GLK1(2)
--------->
GLK1(2)
<-----------
RAV1(2)
--------->
YAB1
--------->
CCA1(2)
--------->
MYB52(1)
----------->
HVH21
--
--
ZmHOX2a(1)
<----------
DOF2
----------->
GT1
--------->
MYB46(3)
<---------
ATHB12
--------->
GLK1(2)
->
DOF2
---------->
DOF2
<----------
ARF1
--------->
WOX13(1)
<---------
ARR11(3)
<-----------
HVH21
--
actagctataaaagtacctttcagtgggatacaagatggagaatcaatctaacagctgaatctgatcttcgaaacccatcagtgtgacaggagattctgt
16547400
<----------
DOF2
============================
------>
NtERF2
<---------
ANAC46
--------->
DEAR4(2)
<------
NtERF2
--------->
RAP2.3(1)
--------->
ATERF1(1)
<---------
ERF1
<---------
RAP2.3(1)
<---------
DEAR4(2)
<---------
RRTF1(1)
<---------
ATERF1(1)
<---------
RAP2.6(1)
<---------
ORA47(2)
<---------
RRTF1(3)
<---------
ATERF1(2)
<---------
DEAR3(1)
<---------
DREB2C(2)
<---------
RAP2.3(3)
--------->
ATERF1(2)
<---------
ANAC58
<---------
ANAC58
--------->
ZAT2
<---------
ZAT2
<---------
YAB1
<---------
ZAT14
<----------
DOF2
------>
NtERF2
--------->
ANAC46
<---------
HSFB2a(2)
<---------
RAP2.6(2)
*
TSS
<-
----------->
RAV1(1)
---------->
DOF2
--------->
HSFB2a(2)
<---------
RAP2.3(2)
===========
--------
At4g35610
<-----------
GT1
<-----------
GT1
<-----------
ARR10
<----------
DOF2
---->
ZmHOX2a(1)
--------->
ZAT14
--------->
ALFIN1
------>
ZmHOX2a(2)
<---------
RRTF1(2)
---------->
ID1
------->
At4g35610
<---------
ZAT6
<----------
DOF2
--------->
ARR11(3)
<-----------
GT1
cctctgaatccaacacaactatagtgtttcaccaaagtggctcttttctcgatctctttgcagagcttggcggcgcttatacttatttttctctt
tgttt
16547500
--------->
ANAC58
--------->
ANAC58
----------->
HVH21
--------->
TGA2(2)
<-----------
TGA1
<-----------
HVH21
<<<<<<<<<<
HY5
<---------
bZIP60(1)
--------->
bZIP60(2)
<-----------
GT1
--------->
ANAC46
--------->
ARR14(2)
--------->
O2
<---------
ARR14(2)
--------->
ANAC55(2)
--------->
LBD16
--------->
bZIP60(1)
<-----------
TBP
<---------
SPL7
<---------
O2
<------
MYB83
<---------
ANAC58
--------->
TGA1a
--------->
MYB59
<---------
ANAC46
<---------
ANAC58
<---------
TGA2(1)
<------
MYB46(1)
<---------
ANAC46
--------->
TGA2(1)
--------->
YAB1
<---------
ANAC55(1)
<---------
TGA1a
<---------
TOE2(3)
----------->
GT1
--------->
ANAC55(2)
==========
bZIP_DOF
<---------
bZIP60(1)
<---------
ARR14(2)
--------->
AHL20(2)
----------
GT1
<---------
TOE1(3)
--------->
MYB59
--------->
ARR14(2)
<---------
AHL20(2)
==========
bZIP_DOF
--------->
bZIP60(1)
--------->
DOF5.7(2)
<----------
DOF2
-----
ttgacgtcacgactaggtttaggtttatgaagtcataagttgggtttatatatcaaaaacgtttccgtatgcaaattttcttttttattccaaaaaatat
16547600
<---------
REM1(1)
--------->
ALFIN1
<------
MYB46(1)
<------
MYB83
--------->
MYB111(1)
--------->
MYB111(2)
--------->
MYB46(2)
<---------
AtMYB61
----------->
GT1
--------->
MYB59
--------->
ICU4
<---------
MYB55(1)
<---------
ICU4
<----------
DOF2
---------->
DOF2
-------
--------->
YAB1
<---------
ZAT2
=========================
--------->
ICU4
<---------
At4g35610
<---------------
AGL15
<------
MYB46(1)
--------->
ZAT2
--------------->
AGL15
<------
MYB83
--------->
At4g35610
<---------
ANAC46
<------
MYB46(1)
----------->
GT1
<---------
ANAC58
<---------
ANAC58
<------
MYB83
<---------
ARR14(2)
<---------
ANAC58
<---------
ANAC58
<--------
P
------>
GT1
<---------
YAB1
<----------
DOF2
--------->
ATHB12
<--------
P
--
gtgaatatttggttataattagtaaaatttgggcctttcttggcccagctttctctagtaaacaactcaacttcattgcttaaaagaggtaggtgtaggt
16547700
----------->
GT1
--------->
WRKY18(1)
--------->
ICU4
<---------------
AGL15
--------->
At4g35610
---->
GT1
<-----------
HVH21
----------->
HVH21
<-----------------
AGL2
<---------
At4g35610
=========================================================================
MADS_MADS
<---------
HSFB2a(2)
-------->
DOF2
<-----------
HVH21
---------->
DOF2
<---------
YAB1
<-----------
GT1
---
gaaaagatgaaatgtcatcgaatgggtcagtctgtctgacactgtgcaaagcgttatggactatttttggtcaaacagttaaactatttcagaagaacaa
16547800
--------->
TGA2(2)
<-----------
HVH21
<-----------
TGA1
--------->
TGA1a
--------->
O2
<---------
TGA1a
<---------
O2
--------->
ANAC58
--------->
ANAC55(2)
--------->
bZIP60(1)
<---------
bZIP60(1)
--------->
bZIP60(2)
--------->
ANAC58
<---------
ANAC55(2)
<----------
ID1
<---------
GLK1(1)
--------->
ANAC58
----
--------->
ALFIN1
------>
NtERF2
--------->
ANAC58
----
<---------
At5g28300
<---------
ALFIN1
<---------
ICU4
<---
=============================
bZIP_DOF
--------->
YAB1
<---
--------->
ARR11(3)
--------->
ANAC55(1)
<---------
YAB1
<----
<---------
ARR11(3)
--------->
ANAC46
--------->
GLK1(2)
--------->
ANAC46
--------
------>
YAB1
<----------
DOF2
<---------
DOF5.7(2)
--------->
ANAC46
--------->
ICU4
<----------
DOF2
tcgaaaccaagaggtctttacggtgatggagttcacgtcatggccacctctaagaaactgtgtttgtaattataacgccaagtctactctttttatcaga
16547900
----------->
HVH21
<---------
MYB52(1)
--------->
TGA1a
--------->
LBD16
==========================
bZIP_DOF
<---------
MYB52(1)
<---------
TGA1a
=======================================
MYC_MYB
--------->
At5g28300
--------->
O2
<---------
TGA1a
<-------
GAMYB
--------->
ANAC55(2)
--------->
O2
--------->
LBD16
==================================
MYC_MYB
------>
NtERF2
====================================
MYC_MYB
--------->
MYB46(3)
<---------
O2
<---------
O2
------>
ZmHOX2a(2)
--------->
TGA1a
--------->
ANAC55(2)
<---------
ARR14(2)
--------->
ANAC58
--------->
TOE2(3)
--------->
ARR14(2)
--------->
ANAC58
--------->
TOE1(3)
----->
GLK1(2)
------>
NtERF2
-------->
P
----->
ARR14(2)
<---------
LBD16
================
MYC_MYB
------
ARR14(2)
<---------
ETT(1)
=================
MYC_MYB
<--------
--------
ARR10
--------->
RAP2.6(3)
------->
GAMYB
==============
-----
GLK1(2)
<---------
LBD16
<---------
ANAC46
--------->
MYB46(3)
<------------
MYB.PH3(1)
->
YAB1
=============================
MYC_MYB
<---------
MYB111(2)
---------->
DOF2
---------
atctgatccgccgttattccggcaagtctcatgtgacttacattatcccttcttaacaacctcaagtgaccaaaaaacaaaagtcaataactgttttaat
16548000
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AGI:
At2g39681.1
Description:
TAS2; other RNA
Range:
from: 16546462
to: 16547495
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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