Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->TOE1(3)                                              --------->TOE2(3)                                            -------->P                                            ------>MYB46(1)       <---------ANAC58                   <---------MYB59       <---------ANAC58                   --------->AtMYB61       <---------ANAC46                   --------->MYB46(3)     <-----------GT1                  <----------ID1 --ZAT18                            --------->DAG2                    ------->TEIL ->ZAT18                           --------->DAG2           <------NtERF2                          <- -ANAC46                --------->WRKY18(1) ------>MYB83  <---------ANAC46                       <--- -ANAC58              <---------MYB46(3) --------->DEAR3(2)--------->LBD16--------->ANAC58       <--- -ANAC58          --------->ALFIN1---------->DOF2        <---------LBD16  --------->ANAC58    -------   tagggttttacttgtacaagatggtggtcaagagagaaaagggaccaaccttagaagatggcggagaagatgaatcaagcgatgggtttgtaagaagtga  16141300                                                                                          --------->ZAT18                                                                                          <---------ZAT18                                                                                         <---------ANAC46                                                                                         <---------ANAC58    ----------->GT1                                                                     -------------  ---------->DOF2                                                             <----------DOF2 -----ZmHOX2a(1)                                                         --------->ARR11(3) ------TOE2(3)        <------ZmHOX2a(1)              <---------ARR14(2)  <---------ARR11(3)      <--- ------TOE1(3)  <--------P   --------->ALFIN1        --------->ARR14(2) <---------GLK1(1)<---------ANAC58 ---->HVH21   <---------ANAC46                --------->At4g35610 <----------DOF2       <------------   aggataaagaaaaatggggtaagaggaagaagtgttgtcgtcaacatcagcatcatatatgccaaactcttttgatatctctttttaagttgtgtacaat  16141400                                                                                  <---------AHL20(2)                                                                                  <---------AHL20(1)       --------->WOX13(1)                                            --------->YAB1     ==============HOX2a_HOX2a                                       --------->AHL20(2)          ----     <------ZmHOX2a(2)                                       ------->GAMYB        --------->AHL20(2) -->AtSPL8              <---------MYB52(1)                  <---------MYB52(2)    --------->AHL20(1) ------ICU4            <-------GAMYB              <---------YAB1    <---------ATHB12    <---------YAB1 ---AtSPL8  ------>ZmHOX2a(1)               ----------->GT1 --------->MYB46(3)   --------->AHL20(2)   ttttgcgatcaatccttctaatttccgttgtatttggattagtgagtcgtttattaatatcaacaaaccaataaaaacgagaattttattttgtttgtga  16141500                                                                                          ------->TEIL                                                                                          --------->GLK1(2)                                                                                          <---------ARR14(2)                           <---------ANAC58                                          <---------ANAC58                           <---------ANAC58                                          <---------ANAC58                      <---------ICU4--------->At4g35610                              <---------ANAC46                     <---------ATHB12                                         --------->At4g35610                ----------------->AGL1    --------->ZAT2               ---------->DOF2   <---------CCA1(2)                <-----------------AGL1    <---------ZAT2   <---------LBD16    <---------At4g35610 ------>DOF2   ---------->ID1   <-----------HVH21  ----------->GT1  <------ZmHOX2a(1)----------->GT1   aaagcccatcaaactttggcccaataagggcctgggtgagcccaagcttgatgcagtaatatcgggataaggagaaagagagcagaagcgtgaatctagt  16141600                       ------>ZmHOX2a(2)                  <-------MYC3                  ------->MYC3                  ------->PIF5                  <-------PIF5                  <-------MYC2                  ------->MYC2                 --------->ANAC58                 --------->ANAC46                 --------->TGA1a                 <---------TGA1a                                                         --------->AHL20(2)                 --------->ANAC55(2)                                                     <---------AHL20(2)                 <---------O2                                                            --------->AHL20(1)                 --------->bZIP60(2)                                                     <---------AHL20(1)                 --------->ANAC58                                                       --------->AHL20(2)                 <---------ANAC55(2)                                           <---------ANAC46                 --------->O2                                --------->WRKY12<-----------HVH21               <------------OsbHLH66      <---------TOE1(3)  --------->WRKY38(1)        <---------AHL20(2)            ------>MYB46(1)               <---------TOE2(3) <---------MYB52(1) ----------->GT1            ------>MYB83       <---------MYB52(1)<-----------GT1    <----------DOF2 --------->AHL20(2)   agtatccatagacctagccacgtgatccaaaccgttgattcttcaaggttttaactgaaaccgttgatcactttgtctcggtcgtataaaataaattaag  16141700                                                                 <---------YAB1                                                               --------->YAB1                                                         --------->LBD16                      <------                                                         <---------At4g35610               --------->GLK1(2)                *TSS                                     ------>NtERF2                    --------->ARR11(3)              <---------MYB52(1)                      <---------ATERF1(1)                 <---------ARR11(3)            --------->ANAC55(2)                      --------->ARR14(2)                   <---------GLK1(2)            <---------ANAC55(2)                      <---------ARR14(2)------>ZmHOX2a(1) <---------RVE1(1)   aacacagtttcagtccgtaatctctatctatcttcttcgtcgtgactcaaacgaggttccgccgattataatccttctctccatacttgagagattttgt  16141800                                        <------MYB46(1)                                        <------MYB83                                       <---------AtMYB61                                      <--------P                                    --------->ALFIN1                               --------->MYB52(1)                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               -------                             ------>ZmHOX2a(2)                                              <--------       <----------DOF2     <---------AGP1                                                 --------->ATHB12  <---------KAN4(1)       <---------CCA1(2)  <----------DOF2                             <---------YAB1  --------->KAN4(1)   --------------------->WRI1                                  ----------->GT1 -----RAV1(1)        <------NtERF2  <-----------RAV1(1)              --------->ETT(1)--------->ATHB12   tggattgttctttgttctgagtcgccttggatctatcggtgttggtgctttgttttttgagctagggattgtcggaacgatggagagtgatttgattgat  16141900                                  <---------ARR14(2)                                 <------NtERF2                                 --------->ATERF1(1)                                <---------ERF1                                <---------DEAR3(2)                                <---------RAP2.3(1)                                <---------RRTF1(1)                                <---------ATERF1(1)                                ------>NtERF2                               <---------RAP2.3(2)                               --------->DEAR3(1)                               <---------RAP2.6(2)                               <---------DEAR3(1)                               <---------RAP2.3(3)                              <---------At4g35610                              <------NtERF2                              ------>NtERF2                              --------->ATERF1(1)                             <---------RAP2.3(1)                             <---------ATERF1(1)                             <---------RRTF1(1)                             <---------DEAR4(2)                            <---------DEAR3(1)                     --------->At4g35610     <-----------HVH21     --------->ARR14(2)                     <---------ZAT2   ----------->HVH21  <---------At4g35610         <---------ZAT2     <---------RAP2.3(2)  <-----------------AGL1         <---------At4g35610<---------RAP2.6(2)  ----------------->AGL1         --------->At4g35610<---------RRTF1(2) <-----------GT1     <---------ARR14(2)       --------->ZAT18   <---------ARR14(2) --------->ALFIN1    <---------TOE2(3)              ------ -->ATHB12           <------NtERF2--------->ARR14(2) <-----------HVH21        ------->TEIL     <----- -WOX13(1)           <---------At4g35610 <---------DEAR3(1)   ------>ZmHOX2a(1)     ------>NtERF2   ttgttcgagggagctaagaaggcagccgatgcggcggctcttgacggtgttacctcttcaggtcctgaggtttctcaatgtatcgatgcccttaaacagc  16142000                   --------->ANAC58                   --------->ANAC46           <-----------HVH21                                        --------->TOE1(3)          ------>ZmHOX2a(1)                                         --------->TOE2(3)        <---------ANAC58                               <---------ARR11(3)        <---------ANAC58                    --------->MYB52(2)--------->ANAC46       <---------AHL20(2)    --------->HSFC1(2)                     <-------TEIL<-----------ARR10       <---------WOX13(1)  <-    <---------HSFB2a(1)                <---------TOE2(2)      --------->ANAC55(2)   --------->AHL20(2)    --------->HSFB2a(1)                <---------TOE1(2)     --------->HSFB2a(2)    <---------AHL20(2)    <---------HSFC1(2)           <---------ANAC58      --------->ARR11(3) ---------->DOF2    <------- --->At4g35610     --------->ANAC58   <-----------RAV1(2)    <---------HSFB2a(2)   <---------WOX13(1) ----At4g35610  --------->TOE1(2)<---------ANAC58 <---------YAB1   --------->ZAT6--------->ATHB12<---   tcaagaagtttcctgtcacatacgataccctcgttgcgactcaggttcgtttctgattatcttctcgtaaccctaaaaaagattgatttattttgcattt  16142100                                                  <---------ANAC58                                                  <---------ANAC58                                               <---------WOX13(1)                         <---------GLK1(2)                                              <---------ANAC58                            <---------ARR11(3)    ----------->GT1                           <---------ANAC58              <---------MYB46(3) ------   --------->DAG2                        --------->ALFIN1                <-----------RAV1(1)   <----- ---------->DOF2             ----------->GT1 --------->ATHB12        <---------ANAC46     --------->ARR11(3) -----ZmHOX2a(1)          <------ZmHOX2a(1) <---------YAB1           <---------ANAC58--------->TOE2(3) ---DOF2            <----------DOF2  <---------HSFB2a(2)             <---------ANAC58--------->TOE1(3) ------TOE2(3)<-----------RAV1(1)    --------->HSFB2a(2)       <---------AtLEC2   <-----------GT1   aggaaaaggtttatatatgttgcatttaggagggtttttctaggtgttgattgcttaatctcgttgcattgacttgtgttgttgttaccttagattttta  16142200  Previous    Next  AGI:  At2g38550.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57280.1); similar to non-green plastid inner envelope membrane protein precursor (GB:AAA84891.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) Range:  from: 16139084    to: 16141493    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g38560.1    Description:  transcription factor S-II (TFIIS) domain-containing protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G42730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48881.1); contains InterPro domain Zinc finger, TFIIS-type; (InterPro:IPR001222); contains InterPro domain Transcription elongation factor, IIS (InterPro:IPR016492); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal; (InterPro:IPR010990); contains InterPro domain Transcription elongation factor, TFIIS/CRSP70, Range:  from: 16141716    to: 16143773    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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