Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               ------>NtERF2                                                                            --------->TGA2(1)                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                            <---------bZIP60(1)     <                                                                            --------->bZIP60(1)     <                                                                            --------->ANAC46        <                                                                            <---------TGA2(1)       -                     --------->YAB1                 --------->LBD16      ----------->TGA1           <                   <---------WOX13(1)               ----------->GT1      ----------->HVH21          <            --------->ARR11(3)                    --------->At4g35610   <---------WOX13(1)          <            --------->AHL20(1)                    <---------At4g35610 --------->MYB52(1)       <-----            <---------AHL20(1)                    <---------LBD16    ----------->HVH21         ------          --------->ARR14(2)                     --------->MYB52(1) <---------MYB59           <------          <---------ARR14(2)               <---------ATHB12        <---------At4g35610        <------       <---------ANAC46                  --------->WOX13(1)       ------->TEIL ----------->RAV1(1) -- <----------DOF2<---------YAB1         <---------YAB1         --------------->AtSPL8     <-------TEIL   actctttttgcgaatattttgaatgatgttctcaatgtattatcaatgaaacagcggaaaaatatgtgtacctgactgacgccacaataggtgcaaataa  16000000      <------ZmHOX2a(1)   <-----------RAV1(2)  <------NtERF2<------NtERF2 ------>NtERF2--------->LBD16 <---------RAP2.3(1) ---------ANAC46 ---------DEAR3(1) ---------RAP2.3(3) -------->ATERF1(2) ---------ATERF1(2)                     --------->HSFB2a(2)                           <---------AtLEC2 ---------RAP2.6(2)                     <---------HSFB2a(2)                    --------->ARR11(3) ---------RAP2.3(2)                     --------->LBD16                        <---------ARR11(3) ----ICU4     <------NtERF2  <XXXXXXXXXXXXXXXXXXXXMIR2111B*              <----------DOF2     -------- --->MYB52(1)--------->RAP2.6(2)<----------DOF2                       --------->ARR11(3)     <------- ---ATHB51  <---------LBD16  --------->ANAC58                         --------->GLK1(2)      <------- ---ATHB12  <---------ANAC46 --------->ANAC58                         <---------ARR11(3)     -------- ------->RAP2.6(3)---------->DOF2      <---------ANAC46          ----------->GT1  <----------DOF2   tggcggcaggaatggccggaaaaagaatggcaagctttgttccgagaatgacttcttggagattagagagaaaatctttaagacctttgtatggaacctt  16000100                                                                                                    <                                                                                                    <                                                                                               <-----                                                                                               <-----                                                                                       ------>ZmHOX2a(1)          <---------TOE1(2)        >>>>>>>>>TBF1                                    <------ZmHOX2a(2)      <---------LBD16       ---------->DOF2                                        --------->ARR14(2) ->HSFB2a(1)              ------>ZmHOX2a(1)             <---------ARR14(2)    --------->At4g35610 <-- --HSFB2a(1)              <---------------AGL15         --------->ARR14(2)    --------->ZAT2   ------ --HSFC1(2)              --------->TOE2(3)            <---------MYB46(3)      <---------ZAT2  <------ ->HSFC1(2)           <-----------GT1               <---------At4g35610  <---------ZAT14      <------   ctgaatcactcggaggtctgattttttcctcaaagaagaagaagacatgttgtgagcggttcttccaagtcttagttctctgctcgatcctttcgccgtt  16000200          <---------ANAC58          <---------ANAC58      <---------GLK1(1)      --------->GLK1(1)      --------->ANAC46    <---------ANAC58         --------->ANAC58    <---------ANAC58         --------->ANAC58 ---------ANAC58            <---------LBD16     --------->LBD16 ---------ANAC58       ----------->HVH21        ------>NtERF2 ----ARR14(2)        --------->At4g35610       --------->ANAC58 ----MYB52(1)     --------->At4g35610          --------->ANAC58                                   --- -------YAB1<---------MYB52(1)                 --------->ANAC46                                  <--- --->ARR14(2)     <---------At4g35610   <---------YAB1     --------->At4g35610                   <--- ---RAP2.6(3)     <---------ZAT2    <-----------HVH21      <---------At4g35610                   <--- -GAMYB<---------ARR14(2)  <---------ALFIN1   <---------LBD16             ----------->GT1   ---------   atgcttgggtttccgttctcagctactgaccacggctctgtcacgattcccgccatttctctactgactcaaaactttgtaaattctgagacacaaacga  16000300                                                                             <---------AHL20(2)                                                                             --------->AHL20(2)                                                                     --------->ATHB12                                                                    <---------YAB1                                                                 <------NtERF2                                                                <-----------TGA1                                                                <---------RAP2.6(3)                                                               <---------ANAC46                                                               <---------ANAC58                                     <----------DOF2           <---------bZIP60(1) ------>HSFB2a(1)                <---------GLK1(2)             --------->TGA2(1) ------TOE1(2)               <---------At4g35610               --------->bZIP60(1) ------TOE2(2)            <----------DOF2                      <---------TGA2(1) ------TOE2(3)           <---------ANAC58            ---------->DOF2--------->ICU4      --------->ATHB12 >MYB52(1)               <---------ANAC58<---------YAB1 *TSS   <---------ANAC58        --------->ICU4   aggtttttttgtgtctcttcgaattttgctttgctgattctttatgtttgttttgtaaagaaatggcgtcatgatttgtttaaatactactgattagttt  16000400                                                                     --------->AHL20(2)                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                             --------->AHL20(2)                                                             <---------AHL20(2)                                                             <---------ICU4                                                             --------->ATHB51               --------->ANAC58                             --------->ICU4               --------->ANAC58                          <---------YAB1         --------->ZAT18                                 --------->AHL20(2)        --------->TCP16(2)     --------->HSFC1(2)       <---------AHL20(2)       <---------TCP16(1)      <---------HSFC1(2)    --------->ARR11(3)       <---------PCF5          <---------HSFB2a(1)   <---------ARR11(3)      <---------ANAC58         --------->HSFB2a(1) <---------TOE2(3) <---------AHL20(2)--------->AHL20(2)      <---------ANAC58     --------->ANAC46    <----------DOF2  --------->AHL20(2)<---------TOE1(3)  <------------CBF  --------->HSFC1(2)    <-----------GT1<---------AHL20(2)       <---------TOE2(3) --------->ATHB12   <---------HSFC1(2)<---------TOE1(2) --------->AHL20(2)    <----------DOF2   tgtttattgggtccaccaaggcaacttccacgaagtttcccaagtttccctttgagattttaattatttaattttttgggatttatggttttaatatttg  16000500                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          <---------AGP1   ----------->GT1                    <---------YAB1--------->At4g35610                  >>>>>>>>>GT-1   <-------GAMYB               ----------->GT1    <---------At4g35610        --------->YAB1    --------->AGP1   <---------REM1(1)  --------->ARR11(3)               ------  <---------------AGL15   --------->ARR11(3)                  <---------ARR14(2)              <------  --------------->AGL15   <---------ARR14(2)                 <---------CCA1(2)              <-------- ----------------->AGL3   <---------ARR11(3)       ------->MYC3                             --------- ----------------->AGL2   --------->ARR14(2)       <-------MYC3                  <-----------GT1   gaaaccaaaatcagaaatggttaatatagatcttgcagttgaaagttgtaacacatggctctcaaatcttgatttttgggaaataactctttggaaatca  16000600                              --------->AHL20(1)                              <---------AHL20(1)                              <---------ARR11(3)        ---------->DOF2       --------->ARR11(3)     --------->YAB1  <---------ANAC58                                     --------->YAB1     --------->AHL20(2)       <---------AHL20(2)                       <----------DOF2      --------- --->YAB1            <---------ANAC58                        <---------AtMYB61        --------->ANAC58 ---ATHB12   <---------AHL20(2)<---------AHL20(2)       <---------ANAC55(2)       --------->ANAC58 -GLK1(1) ----------->GT1     --------->AHL20(2)        --------->ANAC55(2)       --------->ANAC58 >GLK1(1)--------->DAG2 ----------->GT1        ---------->DOF2     <---------CCA1(2)  --------->ANAC58   tactaaattataaagttaattttgcttagtaatatatttatctaatagcaaaagagttatgtgatggtcttatctttcattactaagcaaggaatatgtt  16000700                                                              --------->AHL20(1)                                               --------------->AGL15                          -------                                       ----------->GT1        <---------ARR11(3)             --------                                       <----------ID1         --------->ARR11(3)    --------->ATHB12                                      ----------->GT1        --------->AHL20(2)    <-------TEIL------                              <---------MYB46(3)       <------ZmHOX2a(1)<---------AHL20(2) --------->ARR14(2) >ARR11(3)       <-----------GT1    ---------->DOF2   ----------->GT1  --------->AHL20(2)  <---------ARR14(2)   gaagactaaaatttgattttcacattcaatggtgtttggaaaggaaaaactatgtaaggaaaaatatatactataaaatcaaaaattcattagtatccta  16000800          <---------AHL20(2)         --------->AHL20(2)      --------->ATHB12  <---------ICU4  -------->ATHB1                                                                      --------->ARR11(3)  --------->ATHB12                                                                    --------->GLK1(2) <---------YAB1                           <----------DOF2                 ----------->GT1 -->TOE2(3)          <---------YAB1<-----------GT1                       --------->DAG2 --->GT1 <---------AHL20(2)<---------TOE2(3)                 <----------ID1           <---------ARR11(3) >ZmHOX2a(1) <---------AHL20(2) --------->MYB52(2)     <---------TOE2(3)---------->DOF2             -   aaaatcattgattaaataatcttcttattgatgttatttgccttctttacaagttttgagatagctacaaaaaaaaaagtaaaaccaaaatctataactt  16000900  Previous    Next  AGI:  At2g38170.1    Description:  CAX1 (CATION EXCHANGER 1); calcium ion transmembrane transporter/ calcium:hydrogen antiporter. Identical to Vacuolar cation/proton exchanger 1 (CAX1) [Arabidopsis Thaliana] (GB:Q39253;GB:O80442;GB:Q56WC8); similar to CAX3 (cation exchanger 3), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT3G51860.1); similar to cax51 [Capsella bursa-pastoris] (GB:AAT70233.1); contains InterPro domain Calcium/proton exchanger superfamily (InterPro:IPR004798); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) Range:  from: 15996161    to: 16000356    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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