Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->At4g35610                     <---------ZAT14                                   <---------At4g35610                     --------->ZAT14                                <---------ZAT14                     <---------At4g35610                    <---------At4g35610     --------->DAG2                     <-------TEIL                      --------->CCA1(2)     ----------->GT1                     --------->ZAT18                  <---------ARR14(2)    <---------ANAC46                    --------->ALFIN1                  --------->ARR11(3)   --------->SPL7         --------->ANAC58                             <---------ARR11(3) <---------SPL7         --------->ANAC58                 <---------ZAT6    --------->At4g35610   --------->CCA1(2)       ---------->DOF2                    <-----------RAV1(1)       --------->ZAT14--------->MYB52(1) -----AHL20(2) --------->YAB1   <---------------AtSPL8--------->ARR14(2) ----------->HVH21  --------- ---->AHL20(2)--------->ICU4  <---------ATHB12      ----------->ARR10<-----------RAV1(2)  <------ZmHOX2a(1)   aaacgagaacaaagcaataagggtgcagagcaatgaagtacttactgttggaagaagatttgagctccattgcaggggacggagataagggaggaattcg  15923800                                                                                                  xxx                                                                                                xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                   --------->AHL20(2)     --------->ARR14(2)                                                                   <---------AHL20(2)     <---------ARR14(2)                                                        ----------->GT1                  --------->GLK1(1)                 --------->ANAC58                ----------->GT1----------->GT1      --------->ZAT6             --------->ANAC58                 ------->TEIL --------->AHL20(2)   --------->YAB1 *TSS             --------->ANAC58              <---------YAB1----------->GT1  --------->ZAT6 <---------GLK1(1) >GLK1(1)  *TSS  --------->ANAC58  <---------REM1(1)  --------->ICU4    <-----------GT1 xxxxxxxxxxxxx   aattttgacttgaagaagcaaggaagaagactcagaaatgtagccatgaatgtgtaataagttaaatagttaaataactctacgataacacaaatccgtt  15923900                 xxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------ARR14(2)               --------->ARR14(2)              <------ZmHOX2a(1)           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <--------P        <---------MYB46(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------At4g35610     --------->ZAT2     <---------ZAT2 xxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxx>smallRNA(s) xxxxxxxxxx>smallRNA(s) xxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(i)<-----------ARR10 xxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx>smallRNA(se3)                                  ------->GAMYB xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <------NtERF2 xxxxxxxxxxxxxxxxxx>smallRNA(se3)                     ------>NtERF2 xxxxxxxxxxxx>smallRNA(se3)                           --------->ANAC46 xxxxxxxxxxxxx>smallRNA(se3)                         <---------LBD16                                - xxxxxxxxxxxxxxxx>smallRNA(si3)                      <---------ETT(1)                             <-- xxxxxxxxxxxxx>smallRNA(si3)                         --------->LBD16                              <-- xxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                     <------- xxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->LBD16 --------->MYB52(1)                  <------- xxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------LBD16--------->LBD16                        <------- xxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     -------- xxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(s)                   <----------DOF2---- xxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxx>smallRNA(si3)                ---------->ID1  ----- xxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(s)        <---------AHL20(2)     -------- xxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(s)        --------->AHL20(2)     --------- xxxxxxxxx>smallRNA(le3)        --------->LBD16     <---------LBD16  <---------AHL20(2)   <---------- xxxxxxxxx>smallRNA(si3)  ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(s)       <-----------GT1 <-----   gtagtctagctggttaggatactcggctctcacccgagagacccgggttcgagtcccggcaacggagtttttttaatagtttttctttttttttgtcggc  15924000 -------->SPL7 -------SPL7                                     --------->ARR14(2) -------RAP2.6(3)                               ------>MYB83                                       <- --At1g77200                                  --------->AtMYB61                                ------ --RAP2.6(2)            <-----------TGA1      <---------MYB111(1)                             ======= --DREB2C(2)            <-----------HVH21   ------>NtERF2                                     ------- ->ETT(2)              --------->DEAR3(1)------->GAMYB         <---------ARR14(2)             ------- ----->DEAR3(1)      ------>NtERF2     -------->P<---------ARR14(2)                           ======= ---->SPL7          <---------ALFIN1  ------>MYB46(1)         --------->GLK1(1)<------MYB46(1)------- ->ETT(1)        --------->ANAC58     ------>MYB83      --------->LBD16        <------MYB83   ------- >RAP2.6(3)      --------->ANAC46   <---------MYB46(2)<---------LBD16   --------->ANAC55(2)   <------ -RAV1(1)        --------->ANAC58   <---------MYB59  --------->MYB52(1) <---------ANAC55(2)   ------- -NtERF2       <-----------GT1   <-----------GT1------>MYB46(1)--------->ARR14(2)             <------   cgtccgattaatccattaaacgacaccgtcacatataacctaaccccaccaaatccaccggaacatatccaaataagtgataggtgttaatctcacacgt  15924100                  --------->ALFIN1                 <-------MYC4                 <-------PIF4                 <-------PIF5                 --------->TOE1(2)                 ------->MYC4                 ------->PIF5                 ------->PIF4                 ------->MYC2                 <-------MYC3                 ------->MYC3                 <-------MYC2                --------->TGA1a                <---------TGA1a                ==============================================MYC_MYB                ========================bZIP_DOF         ------->MYC2         <-------MYC3         ------->MYC3         ------->PIF5        ================================bZIP_DOF        ================================bZIP_DOF        --------->O2        <---------bZIP60(2)        <---------TGA1a        <---------O2        --------->TGA1a        --------->ANAC55(2)                                       --------->HSFC1(2)        <---------ANAC58                                          --------->HSFB2a(1)        <---------ANAC46                                          <---------HSFB2a(1)        <---------ANAC55(2)                                  ------->GAMYB        <---------ANAC58                                   ------>MYB83--------->HSFB2a(2)     ----------->HVH21                                     ------>MYB46(1)    <-----------------PIF3(1)                              -------->P  *TSS    <-----------HVH21                                      --------->MYB52(1)  <------ZmHOX2a(1)                                       --------->MYB52(1) -----ZmHOX2a(1)========================bZIP_DOF          --------->MYB55(1) --->TOE1(2)   ------------>OsbHLH66                     <---------MYB55(2) =======================================bZIP_DOF         --------->MYB46(3) -->ANAC58    <------------OsbHLH66                      --------->AtMYB61                       <--- -->ANAC46   <---------PCF2                           ------->GAMYB --------->ARR11(3)           <--- =================bZIP_bZIP                  <---------TOE1(3)  ---------->DOF2                  ---- -->ANAC58--------->ALFIN1               <---------DAG2  <---------MYB111(2)              --------->ARR14(2) -->TGA1a<-------PIF5            --------->ARR11(3)  --------->MYB46(3)<---------HSFB2a(2)<---------ARR14(2) ---O2 <-----------------------TaNAC69(2)<----------DOF2--------->MYB46(3)         --------->ANAC58 -->O2 ------------>OsbHLH66     <---------ARR11(3)<-----------GT1<---------HSFC1(2)     <------ZmHOX2a(1) ---TGA1a<-------MYC2        ---------->DOF2 <---------TOE2(3)--------->LBD16      --------->ANAC58 <   aggaggagtcacgtgggcacgtgcgagagagcaaaggtctaaactttatggtttaacgaccaaccggaaagttctggcaattggcaaggaaggattcgaa  15924200                                                      <-------MYC3                                                      ------->MYC3                                                      <-------MYC2                                                      ------->MYC2                                                      ------->PIF5                                                      <-------PIF5                                                     --------->ANAC58                                                     --------->ANAC58   <---------MYB46(3)                           --------->ARR14(2)  <--------P                                    <---------ARR14(2) <-------GAMYB                              --------->ANAC46 ------ZAT2 <---------ARR14(2)            --------->ANAC58                   --------->ANAC58 ------At4g35610                          --------->ANAC58       --------->ANAC58 ----->ZAT2 --------->ARR14(2)            --------->ANAC46       --------->ANAC58   --------->ZAT6 ---------MYB46(3)                <---------ALFIN1   --------->ANAC46        --------->ANAC58   gctggttgtttcccaatctgcataagaaatatcgaaacacttccacacaaaatccacgcgctctctcacgctcactcactcgcataacacttgttccttc  15924300                                  <----------DOF2                                 <---------ANAC58                       ------>ZmHOX2a(2)                       ================================HOX2a_HOX2a                       ===================================HOX2a_HOX2a                       ------>ZmHOX2a(2)                      =================================HOX2a_HOX2a                        <---------ARR14(2)                      <------ZmHOX2a(2)                                                   --------->ARR11(3)                      ====================================HOX2a_HOX2a                     --------->ARR14(2)                     --------->ARR11(3)                      ----------->RAV1(2)          <---------ARR11(3)                     <---------ARR11(3)         ------>ZmHOX2a(1)             <<<<<<<<<TBF1<---------GLK1(1)              --------->MYB52(1) <---------ANAC58  ------>ZmHOX2a(1)  <---------At4g35610<---------CCA1(2)   ttctctcaatttcaaaaaacgacgatctcttcgatgctttctcttccttcctccttcatttccttctgactctgctcttcttcttcgtcttggatcttcg  15924400                                <----------DOF2                                    <---------AHL20(2)                          <---------AHL20(2)                                 <---------ANAC46    ----                      ----------->GT1                                        <---------ANAC58    ----                     --------->DAG2  <---------At4g35610                 --------->CCA1(2)       <---                <---------TOE1(3)    --------->ZAT2   <---------MYB46(3)--------->ARR14(2)       ----                <---------TOE2(3)    <---------ZAT2<-----------RAV1(1)  <---------ARR14(2)       ----     <----------DOF2---------->DOF2  --------->At4g35610  --------->ATHB12   <---------ANAC58    ----   aatttgtctttgtgatttgaggtaaagtttaattctttgagctgggttttgttttgttgttgatgggtttcagagatttgcttgttttatttctgagaca  15924500                                                                >>>>>>>>>GATA-4                                                           <---------O2                                                           <---------ANAC46         --------->ALFIN1                           <-----------GT1        --------->At4g35610                        <---------AHL20(2)         --------->ATHB12 ----->ANAC58                                 <---------AHL20(1)>>>>>>>>>GATA-3 ----->ANAC55(2)    ----------->HVH21         <---------AHL20(2)--------->ARR14(2) ------ANAC55(2) <---------ARR14(2)           --------->AHL20(1)>>>>>>>>>GATA-1     <----------DOF2 ----->ANAC55(1) --------->ARR14(2)           --------->AHL20(2)>>>>>>>>>GATA-2    <---------ANAC58 ----->ANAC46    --------->GLK1(2)           --------->AHL20(2) <---------ARR14(2) <---------ANAC58<- ----->ANAC58    <-----------ARR10   <<<<<<<<<TBF1--------->AHL20(2)      ------>ZmHOX2a(2)------>ZmHOX2a(2)   cgaaatgggcagtggaacaaatctgaccaatttgtgttcttcttcaattttatttaatctctcgtggattcagtgatcgacgattgcttttgatctaatt  15924600                                                     ------>ZmHOX2a(2)                                                     <-------TEIL                                              <---------ANAC46                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)      --------->ANAC58                                    --------->ARR14(2)      --------->ANAC58                                    --------->AGP1 --------->ARR14(2)        <---------AtMYB61           <---------ARR14(2)      --------->ANAC55(2)------->GAMYB   <------MYB46(1)                  <---------ARR11(3)      --------->ANAC46  --------->ANAC58   <---------MYB46(3)               --------->ARR11(3)  --------->AtLEC2      --------->ANAC58   <------MYB83 <-----------HVH21   <---------AGP1 <---------ARR14(2)         --------->ANAC46  <---------AtMYB61             ---------->DOF2 --------->ALFIN1       --------->ARR11(3) ----------RAV1(1)   <---------ZAT6--------->RVE1(1)<------ZmHOX2a(2)  <---------ARR11(3)   tgtgttggttttggtttctgtcagtgttatagaataaagatctgtttggagtggatccattcaagtaattgaagaactcaacgcaaaaaatggcttcaat  15924700  Previous    Next  AGI:  At2g38025.1    Description:  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.1); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.3); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15771.1); contains InterPro domain Ovarian tumour, otubain (InterPro:IPR003323) Range:  from: 15922036    to: 15923811    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g38030.1    Description:  pre-tRNA. tRNA-Glu (anticodon: CTC) Range:  from: 15923895    to: 15923967    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g38040.1    Description:  CAC3 (acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit); acetyl-CoA carboxylase. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38580.1); similar to chloroplast carboxyltransferase alpha subunit [Brassica napus] (GB:AAS46759.1); similar to chloroplast acetyl-CoA carboxylase carboxyltransferase alpha subunit [Gossypium hirsutum] (GB:ABU53027.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15772.1); contains InterPro domain Acetyl-CoA carboxylase, alpha subunit; (InterPro:IPR001095); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763) Range:  from: 15924171    to: 15928248    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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