Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   ----------->GT1                                              --------->DAG2                                             ---------->DOF2                                          <---------ANAC58                                          <---------ANAC46                                     --------->ARR14(2)   <---------GLK1(2)                 <---------GLK1(2) --ZmHOX2a(1)                        <---------ARR14(2) ----At4g35610                     <---------TOE1(2) ----RAV1(2)     ------->TEIL      <---------TOE2(2)    <---------YAB1 >ZAT14 ------>ZmHOX2a(1)--------->GLK1(2)<---------ANAC58           <---------MYB46(3)        ------   agaccgattcctagagatgaatataagaatcaattcgcagattagcgtaaagggttttatcagagactcgattgttgaattcaataaacgagaaaacaca  15923500                                                                                <---------ARR14(3)                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)                                                                                <---------ARR11(3)                                                                                --------->ARR14(3)                                                     <---------YAB1             --------->ARR11(3)                          --------->ANAC46  <---------MYB52(1)            --------->ALFIN1                          --------->ANAC55(2)     --------->ICU4        <---------bZIP60(2)                          <---------ANAC55(2)    <---------ANAC58       <---------ANAC46          <---------GLK1(2)               --------->MYB52(2)          --------->ZAT14     -----------    <------ZmHOX2a(1)     --------->ANAC55(1)    <---------ANAC58     <---------ZAT14   <---------At4g35610 --->ANAC46      <---------ANAC46       <---------MYB52(1)            --------->ZAT18  ------->TEIL--   catcgaggaattgattctggcgaagaacacataactatttcccttcgttgtgcttatgaatgaagcagggagtgaagtggaagatattgaatctgacaca  15923600                         --------->GLK1(2)                         --------->ARR14(2)                                      --------->YAB1                         <---------ARR11(1)      --------->At4g35610           <---------WOX13(1)                         <-----------ARR10    <---------At4g35610           <---------YAB1                         ------->TEIL         <---------ZAT2               <---------TOE2(3)                         <---------ARR14(2)   --------->At4g35610      --------->YAB1                  --------->ANAC58            --------->ZAT2   --------->At4g35610                  --------->ANAC58--------->ANAC58   --------->HSFB2a(2)<---------AHL20(2)      ----- >HVH21<------ZmHOX2a(1)<---------CCA1(2)   <-----------RAV1(2)<---------At4g35610              <---- ---------------------->ANAC81    --------->ANAC58   <---------HSFB2a(2)<---------YAB1<---------ZAT6   gaagcagtaggagaagaaacaagctcgaatctagcgaagccatttctcagctgctctagaatgttatctgcgatattaatgaatgatagtgttagaaatt  15923700                     <-------TEIL                     <---------At4g35610                               <---------At4g35610                     --------->At4g35610                            <---------ZAT14                     --------->ZAT18                        <---------At4g35610     --------->DAG2                     --------->ZAT14                   --------->CCA1(2)     ----------->GT1                     <---------ZAT14                  <---------ARR14(2)    <---------ANAC46                    --------->ALFIN1                  <---------ARR11(3)   --------->SPL7         --------->ANAC58                             --------->ARR14(2) <---------SPL7         --------->ANAC58                 <-----------RAV1(1)       --------->ZAT14--------->MYB52(1)       ---------->DOF2                    <---------ZAT6    --------->At4g35610   --------->CCA1(2) ---->AHL20(2) --------->YAB1   <---------------AtSPL8--------->ARR11(3) ----------->HVH21  --------- -----AHL20(2)--------->ICU4  <---------ATHB12      ----------->ARR10<-----------RAV1(2)  <------ZmHOX2a(1)   aaacgagaacaaagcaataagggtgcagagcaatgaagtacttactgttggaagaagatttgagctccattgcaggggacggagataagggaggaattcg  15923800                                                                                                  xxx                                                                                                xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx 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                                                                                              xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               *TSS                                                                                               xxxxxx                                                                   --------->AHL20(2)     --------->ARR14(2)                                                                   <---------AHL20(2)     <---------ARR14(2)                                                        ----------->GT1                  <---------GLK1(1)                 --------->ANAC58                ----------->GT1----------->GT1      --------->ZAT6             --------->ANAC58                 ------->TEIL --------->AHL20(2)   --------->YAB1 xxxxxx             --------->ANAC58              <---------YAB1----------->GT1  --------->ZAT6 --------->GLK1(1) >GLK1(1)  *TSS  --------->ANAC58  <---------REM1(1)  --------->ICU4    <-----------GT1 xxxxxxxxxxxxx   aattttgacttgaagaagcaaggaagaagactcagaaatgtagccatgaatgtgtaataagttaaatagttaaataactctacgataacacaaatccgtt  15923900                 xxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------ARR14(2)               --------->ARR14(2)              <------ZmHOX2a(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <--------P        <---------MYB46(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->ZAT2     <---------At4g35610     <---------ZAT2 xxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(se3)                                   ------->GAMYB xxxxxxxxxxx>smallRNA(se3)                             <------NtERF2 xxxxxxxxxxxx>smallRNA(se3)                           --------->ANAC46 xxxxxxxxx>smallRNA(fl3)                              --------->LBD16 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <---------LBD16                                - xxxxxxxxxx>smallRNA(fl3)                            --------->LBD16                              <-- xxxxxxxxxxx>smallRNA(fl3)                           <---------ETT(1)                             <-- xxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxx>smallRNA(fl3)                     <------- xxxxxxxxxx>smallRNA(i)                <---------LBD16------>NtERF2                          <------- xxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     -------- xxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxx>smallRNA(s)                              -------- xxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(si3)                  <----------DOF2---- xxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxx>smallRNA(s)        <---------AHL20(2)     <------- xxxxxxxxxx>smallRNA(s)<-----------ARR10 --------->LBD16 --------->MYB52(1)     ---------->ID1  ----- xxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxx>smallRNA(s)        --------->AHL20(2)     --------- xxxxxxxxxxxxx>smallRNA(le3)    --------->LBD16     <---------LBD16  <---------AHL20(2)   <---------- xxxxxxxxx>smallRNA(si3)  ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(s)       <-----------GT1 <-----   gtagtctagctggttaggatactcggctctcacccgagagacccgggttcgagtcccggcaacggagtttttttaatagtttttctttttttttgtcggc  15924000 -------->SPL7 -------SPL7                                     --------->ARR14(2) -------RAP2.6(3)                               ------>MYB83                                       <- --At1g77200                                  --------->AtMYB61                                ------ --DREB2C(2)            <-----------TGA1      <---------MYB111(1)                             ------- ->ETT(2)               <-----------HVH21   ------>NtERF2                                     ------- ->ETT(1)              --------->DEAR3(1)------->GAMYB         --------->ARR14(2)             ======= ----->DEAR3(1)      ------>NtERF2     -------->P<---------ARR14(2)                           ------- --RAP2.6(2)        <---------ALFIN1  ------>MYB46(1)         --------->GLK1(1)<------MYB46(1)======= ---->SPL7       --------->ANAC46     ------>MYB83      --------->LBD16        <------MYB83   ------- >RAP2.6(3)      --------->ANAC58   <---------MYB59  --------->MYB52(1) <---------ANAC55(2)   <------ -RAV1(1)        --------->ANAC58   <---------MYB46(2)<---------LBD16   --------->ANAC55(2)   <------ -NtERF2       <-----------GT1   <-----------GT1------>MYB46(1)<---------ARR14(2)             -------   cgtccgattaatccattaaacgacaccgtcacatataacctaaccccaccaaatccaccggaacatatccaaataagtgataggtgttaatctcacacgt  15924100                  --------->ALFIN1                 <-------PIF4                 <-------MYC3                 ------->MYC3                 <-------MYC2                 ------->MYC4                 <-------MYC4                 ------->PIF5                 ------->MYC2                 <-------PIF5                 ------->PIF4                 --------->TOE1(2)                <---------TGA1a                --------->TGA1a                ==============================================MYC_MYB                ========================bZIP_DOF         ------->PIF5         <-------PIF5         ------->MYC2         <-------MYC2        --------->TGA1a        <---------ANAC55(2)        <---------TGA1a        --------->ANAC55(2)        ================================bZIP_DOF        <---------ANAC46        <---------ANAC58        <---------bZIP60(2)                                       <---------HSFC1(2)        ================================bZIP_DOF                  --------->HSFB2a(1)        --------->O2                                              --------->HSFC1(2)        <---------ANAC58                                     ------->GAMYB        <---------O2                                       ------>MYB46(1)     ----------->HVH21                                     ------>MYB83*TSS    <-----------HVH21                                      --------->MYB52(1)    <-----------------PIF3(1)                              -------->P  <---------HSFB2a(2)  <------ZmHOX2a(1)                                       --------->MYB55(1) -----ZmHOX2a(1)========================bZIP_DOF          --------->MYB52(1) --->TOE1(2)   ------------>OsbHLH66                     --------->MYB46(3) -->ANAC46    <------------OsbHLH66                      --------->AtMYB61 -->ANAC58   <---------PCF2                              <---------MYB111(2)                     <--- =================bZIP_bZIP                  <---------TOE2(3)  ---------->DOF2                  ---- -->O2 <-----------------------TaNAC69(2)<---------DAG2  <---------MYB55(2)                      <--- =======================================bZIP_DOF      ------->GAMYB --------->ARR11(3)    <---------ARR14(2) -->ANAC58--------->ALFIN1               <----------DOF2--------->MYB46(3)         --------->ANAC58 ---O2 ------------>OsbHLH66     --------->ARR11(3)  --------->MYB46(3)--------->HSFB2a(2)--------->ARR14(2) ---TGA1a------->MYC3            <---------ARR11(3)<-----------GT1<---------HSFB2a(1)    <------ZmHOX2a(1) -->TGA1a<-------MYC3        ---------->DOF2 <---------TOE1(3)--------->LBD16      --------->ANAC58 <   aggaggagtcacgtgggcacgtgcgagagagcaaaggtctaaactttatggtttaacgaccaaccggaaagttctggcaattggcaaggaaggattcgaa  15924200                                                      ------->MYC2                                                      <-------PIF5                                                      ------->PIF5                                                      <-------MYC2                                                      <-------MYC3                                                      ------->MYC3                                                     --------->ANAC58                                                     --------->ANAC58   <---------MYB46(3)                           <---------ARR14(2)  <--------P                                    --------->ARR14(2) <-------GAMYB                              --------->ANAC46 ------ZAT2 --------->ARR14(2)            --------->ANAC46                   --------->ANAC58 ----->ZAT2 <---------ARR14(2)            --------->ANAC58       --------->ANAC58 ------At4g35610                          --------->ANAC58       --------->ANAC58   --------->ZAT6 ---------MYB46(3)                <---------ALFIN1   --------->ANAC46        --------->ANAC58   gctggttgtttcccaatctgcataagaaatatcgaaacacttccacacaaaatccacgcgctctctcacgctcactcactcgcataacacttgttccttc  15924300                                  <----------DOF2                                 <---------ANAC58                       ------>ZmHOX2a(2)                       ================================HOX2a_HOX2a                       ===================================HOX2a_HOX2a                       ------>ZmHOX2a(2)                      =================================HOX2a_HOX2a                        <---------ARR11(3)                      ====================================HOX2a_HOX2a                     --------->ARR11(3)                      <------ZmHOX2a(2)                                                   --------->ARR14(2)                     --------->ARR11(3)                      ----------->RAV1(2)          <---------ARR14(2)                     <---------ARR11(3)         ------>ZmHOX2a(1)             <<<<<<<<<TBF1<---------GLK1(1)              --------->MYB52(1) <---------ANAC58  ------>ZmHOX2a(1)  <---------At4g35610<---------CCA1(2)   ttctctcaatttcaaaaaacgacgatctcttcgatgctttctcttccttcctccttcatttccttctgactctgctcttcttcttcgtcttggatcttcg  15924400  Previous    Next  AGI:  At2g38025.1    Description:  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.1); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.3); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15771.1); contains InterPro domain Ovarian tumour, otubain (InterPro:IPR003323) Range:  from: 15922036    to: 15923811    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g38030.1    Description:  pre-tRNA. tRNA-Glu (anticodon: CTC) Range:  from: 15923895    to: 15923967    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g38040.1    Description:  CAC3 (acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit); acetyl-CoA carboxylase. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38580.1); similar to chloroplast carboxyltransferase alpha subunit [Brassica napus] (GB:AAS46759.1); similar to chloroplast acetyl-CoA carboxylase carboxyltransferase alpha subunit [Gossypium hirsutum] (GB:ABU53027.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15772.1); contains InterPro domain Acetyl-CoA carboxylase, alpha subunit; (InterPro:IPR001095); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763) Range:  from: 15924171    to: 15928248    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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