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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                              <-----
                                                                                            <-------
                                                                                           ---------
                                       --------->At4g35610                              --------->At4g35610
                            --------->ANAC46            --------->ZAT6                  <---------At4g35610
    --------->MYB52(1)      --------->ANAC58          <-----------GT1             <----------DOF2
 --------->YAB1             --------->ANAC58       <----------DOF2               <---------DAG2<----
-------->AHL20(2)   <---------YAB1     <---------At4g35610       --------->ANAC46--------->TOE2(3)
 
ataaaaataacagaaactacattaccaatgctcgaaacagacatctcccatcccctttaactctatccacagcatacttctcaacctttttcgctgcagg  15923400
                                                ----------->GT1
                                             --------->DAG2
                                            ---------->DOF2
                                         <---------ANAC46
                                         <---------ANAC58
                                    --------->ARR14(2)
  <---------GLK1(2)                 <---------GLK1(2)
----At4g35610                       <---------ARR14(2)
----RAV1(2)                       <---------TOE1(2)
>ZAT14 ------>ZmHOX2a(1)--------->GLK1(2)<---------ANAC58           <---------MYB46(3)
--ZmHOX2a(1)    ------->TEIL      <---------TOE2(2)    <---------YAB1                         ------
 
agaccgattcctagagatgaatataagaatcaattcgcagattagcgtaaagggttttatcagagactcgattgttgaattcaataaacgagaaaacaca  15923500
                                                                               --------->ARR14(2)
                                                                               <---------ARR11(3)
                                                                               <---------ARR14(2)
                                                                               <---------ARR14(3)
                                                                               --------->ARR11(3)
                                                    <---------YAB1             --------->ARR14(3)
                         --------->ANAC55(2)     --------->ICU4          --------->ALFIN1
                         --------->ANAC46  <---------MYB52(1)          <---------bZIP60(2)
                         --------->ANAC55(1)    <---------ANAC58       <---------ANAC46
         <---------GLK1(2)               --------->MYB52(2)          --------->ZAT14     -----------
   <------ZmHOX2a(1)     <---------ANAC55(2)    <---------ANAC58     <---------ZAT14   <---------At4g35610
--->ANAC46      <---------ANAC46       <---------MYB52(1)            --------->ZAT18  ------->TEIL--
 
catcgaggaattgattctggcgaagaacacataactatttcccttcgttgtgcttatgaatgaagcagggagtgaagtggaagatattgaatctgacaca  15923600
                        <---------ARR14(2)
                        ------->TEIL                                            --------->YAB1
                        <-----------ARR10       --------->At4g35610           <---------WOX13(1)
                        --------->ARR14(2)   --------->At4g35610           <---------YAB1
                        --------->GLK1(2)    <---------At4g35610          <---------TOE2(3)
                        <---------ARR11(1)   <---------ZAT2           --------->YAB1
                 --------->ANAC58            --------->ZAT2   --------->At4g35610
                 --------->ANAC58--------->ANAC58   --------->HSFB2a(2)<---------AHL20(2)      -----
>HVH21<------ZmHOX2a(1)<---------CCA1(2)   <-----------RAV1(2)<---------At4g35610              <----
---------------------->ANAC81    --------->ANAC58   <---------HSFB2a(2)<---------YAB1<---------ZAT6
 
gaagcagtaggagaagaaacaagctcgaatctagcgaagccatttctcagctgctctagaatgttatctgcgatattaatgaatgatagtgttagaaatt  15923700
                    --------->ZAT18
                    <---------At4g35610                               <---------At4g35610
                    <---------ZAT14                                <---------ZAT14
                    --------->At4g35610                    --------->At4g35610     --------->DAG2
                    <-------TEIL                      --------->CCA1(2)     ----------->GT1
                    --------->ZAT14                  <---------ARR11(3)    <---------ANAC46
                   --------->ALFIN1                  <---------ARR14(2)   --------->SPL7
        --------->ANAC58                             --------->ARR14(2) ----------->HVH21
        --------->ANAC58                 <-----------RAV1(1)       --------->ZAT14--------->MYB52(1)
      ---------->DOF2                    <---------ZAT6    <---------At4g35610   --------->CCA1(2)
---->AHL20(2) --------->YAB1   <---------------AtSPL8--------->ARR11(3) <---------SPL7     ---------
-----AHL20(2)--------->ICU4  <---------ATHB12      ----------->ARR10<-----------RAV1(2)  <------ZmHOX2a(1)
 
aaacgagaacaaagcaataagggtgcagagcaatgaagtacttactgttggaagaagatttgagctccattgcaggggacggagataagggaggaattcg  15923800
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                                                                                              *TSS
                                                                                              xxxxxx
                                                                  --------->AHL20(2)     <---------ARR14(2)
                                                                  <---------AHL20(2)     --------->ARR14(2)
                                                       ----------->GT1                  <---------GLK1(1)
                --------->ANAC58                ----------->GT1----------->GT1      --------->ZAT6
            --------->ANAC58                 ------->TEIL --------->AHL20(2)   --------->YAB1 xxxxxx
            --------->ANAC58              <---------YAB1----------->GT1  --------->ZAT6 --------->GLK1(1)
>GLK1(1)  *TSS  --------->ANAC58  <---------REM1(1)  --------->ICU4    <-----------GT1 xxxxxxxxxxxxx
 
aattttgacttgaagaagcaaggaagaagactcagaaatgtagccatgaatgtgtaataagttaaatagttaaataactctacgataacacaaatccgtt  15923900
                xxxxxxxxxxxxxxxxx>smallRNA(si3)
              --------->ARR14(2)
              <---------ARR14(2)
             <------ZmHOX2a(1)
          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
          xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
         <--------P
       <---------MYB46(3)
     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
    --------->ZAT2
    <---------At4g35610
    <---------ZAT2
xxxxxxxxxxxxx>smallRNA(i)
xxxxxxxxxxx>smallRNA(s)
xxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxx>smallRNA(le3)                                    ------->GAMYB
xxxxxxxxxxxxx>smallRNA(fl3)                           <------NtERF2
xxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->ANAC46
xxxxxxxxxxxxx>smallRNA(le3)                          --------->LBD16
xxxxxxxxxxx>smallRNA(fl3)                           <---------LBD16                                -
xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <---------ETT(1)                             <--
xxxxxxxxxxx>smallRNA(si3)                           --------->LBD16                              <--
xxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxx>smallRNA(fl3)                     --------
xxxxxxxxxxxxx>smallRNA(si3)           <---------LBD16------>NtERF2                          <-------
xxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <-------
xxxxxxxxxx>smallRNA(s)           xxxxxxxxxxxxxxxx>smallRNA(s)                               --------
xxxxxxxxxx>smallRNA(i)<-----------ARR10 --------->LBD16 --------->MYB52(1)       <----------DOF2----
xxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxx>smallRNA(si3)                ---------->ID1  -----
xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)       <---------AHL20(2)     <-------
xxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)        --------->AHL20(2)     ---------
xxxxxxxxx>smallRNA(si3)        --------->LBD16     <---------LBD16  <---------AHL20(2)   <----------
xxxxxxxxx>smallRNA(si3)  ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(s)       <-----------GT1 <-----
 
gtagtctagctggttaggatactcggctctcacccgagagacccgggttcgagtcccggcaacggagtttttttaatagtttttctttttttttgtcggc  15924000
-------->SPL7
-------RAP2.6(3)                                --------->ARR14(2)
-------SPL7                                    ------>MYB83                                       <-
->ETT(2)                                     <---------MYB111(1)                              ------
--DREB2C(2)            <-----------HVH21     --------->AtMYB61                               -------
--RAP2.6(2)            <-----------TGA1    ------>NtERF2                                     -------
->ETT(1)              --------->DEAR3(1)------->GAMYB         --------->ARR14(2)             =======
----->DEAR3(1)      ------>NtERF2     -------->P<---------ARR14(2)                           =======
---->SPL7          <---------ALFIN1  ------>MYB83            --------->GLK1(1)<------MYB46(1)-------
--At1g77200     --------->ANAC58     ------>MYB46(1)   --------->LBD16        <------MYB83   <------
>RAP2.6(3)      --------->ANAC46   <---------MYB46(2)<---------LBD16   --------->ANAC55(2)   -------
-RAV1(1)        --------->ANAC58   <---------MYB59  --------->MYB52(1) <---------ANAC55(2)   <------
-NtERF2       <-----------GT1   <-----------GT1------>MYB46(1)<---------ARR14(2)             -------
 
cgtccgattaatccattaaacgacaccgtcacatataacctaaccccaccaaatccaccggaacatatccaaataagtgataggtgttaatctcacacgt  15924100
                 --------->ALFIN1
                <-------PIF5
                ------->MYC2
                <-------MYC3
                ------->MYC3
                <-------PIF4
                ------->PIF4
                ------->PIF5
                <-------MYC2
                --------->TOE1(2)
                <-------MYC4
                ------->MYC4
               --------->TGA1a
               <---------TGA1a
               ========================bZIP_DOF
               ==============================================MYC_MYB
        ------->PIF5
        <-------PIF5
        ------->MYC2
        <-------MYC3
       <---------ANAC58
       <---------O2
       <---------ANAC46
       <---------ANAC55(2)
       --------->TGA1a
       --------->ANAC55(2)
       <---------TGA1a
       <---------bZIP60(2)                                       <---------HSFC1(2)
       --------->O2                                              --------->HSFC1(2)
       <---------ANAC58                                          <---------HSFB2a(1)
       ================================bZIP_DOF             ------->GAMYB
       ================================bZIP_DOF           ------>MYB83*TSS
    ----------->HVH21                                     ------>MYB46(1)
   <-----------------PIF3(1)                              -------->P  <---------HSFB2a(2)
   <-----------HVH21                                      --------->MYB52(1)
 <------ZmHOX2a(1)                                       --------->MYB55(1)
-----ZmHOX2a(1)========================bZIP_DOF          --------->MYB52(1)
--->TOE1(2)   ------------>OsbHLH66                     <---------MYB111(2)
-->ANAC58    <------------OsbHLH66                      --------->MYB46(3)
-->ANAC58   <---------PCF2                              <---------MYB55(2)                      <---
=================bZIP_bZIP                  <---------TOE1(3)  ---------->DOF2                  ----
=======================================bZIP_DOF      ------->GAMYB --------->ARR11(3)           <---
-->O2 <-----------------------TaNAC69(2)<---------DAG2  --------->AtMYB61                <---------ARR14(2)
---O2 ------------>OsbHLH66             <----------DOF2--------->MYB46(3)         --------->ANAC58
-->ANAC46--------->ALFIN1       <---------ARR11(3)  --------->MYB46(3)--------->HSFB2a(2)--------->ARR14(2)
---TGA1a<-------MYC2            --------->ARR11(3)<-----------GT1--------->HSFB2a(1)    <------ZmHOX2a(1)
-->TGA1a------->MYC3        ---------->DOF2 <---------TOE2(3)--------->LBD16      --------->ANAC58 <
 
aggaggagtcacgtgggcacgtgcgagagagcaaaggtctaaactttatggtttaacgaccaaccggaaagttctggcaattggcaaggaaggattcgaa  15924200
                                                     <-------MYC3
                                                     <-------MYC2
                                                     ------->MYC3
                                                     <-------PIF5
                                                     ------->MYC2
                                                     ------->PIF5
                                                    --------->ANAC46
                                                    --------->ANAC58
  <---------MYB46(3)                           --------->ARR14(2)
 <--------P                                    <---------ARR14(2)
<-------GAMYB                              --------->ANAC46
------At4g35610                          --------->ANAC58                   --------->ANAC58
----->ZAT2 <---------ARR14(2)            --------->ANAC46       --------->ANAC58
------ZAT2 --------->ARR14(2)            --------->ANAC58       --------->ANAC58   --------->ZAT6
---------MYB46(3)                <---------ALFIN1   --------->ANAC58        --------->ANAC58
 
gctggttgtttcccaatctgcataagaaatatcgaaacacttccacacaaaatccacgcgctctctcacgctcactcactcgcataacacttgttccttc  15924300
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AGI:  At2g38025.1   
Description:  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.1); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.3); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15771.1); contains InterPro domain Ovarian tumour, otubain (InterPro:IPR003323)
Range:  from: 15922036    to: 15923811    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g38030.1   
Description:  pre-tRNA. tRNA-Glu (anticodon: CTC)
Range:  from: 15923895    to: 15923967    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At2g38040.1   
Description:  CAC3 (acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit); acetyl-CoA carboxylase. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38580.1); similar to chloroplast carboxyltransferase alpha subunit [Brassica napus] (GB:AAS46759.1); similar to chloroplast acetyl-CoA carboxylase carboxyltransferase alpha subunit [Gossypium hirsutum] (GB:ABU53027.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15772.1); contains InterPro domain Acetyl-CoA carboxylase, alpha subunit; (InterPro:IPR001095); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763)
Range:  from: 15924171    to: 15928248    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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