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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---------->
DOF2
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
--------->
AGP1
<---------
ARR14(2)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
At4g35610
<---------
MYB46(3)
<---------
AGP1
<---------
At4g35610
<--------
P
---------->
DOF2
--------->
WOX13(1)
<---------
MYB46(3)
--------->
YAB1
<---------------
AGL15
--------->
ATHB12
=================================================================
MADS_MADS
-------->
ICU4
--------->
TOE2(3)
----------------->
AG
<--------
---------
ATHB12
--------->
TOE1(3)
--------->
At5g28300
---------->
DOF2
--->
ANAC58
--------------->
AGL15
<---------
DEAR3(2)
--------->
YAB1
<---------
AtMYB61
--->
ANAC58
<---------
YAB1
<----------
ID1
----------->
GT1
--------------->
AGL15
--->
AtLEC2
<-----------
GT1
<---------
ICU4
------->
TEIL
----------------->
AGL3
--
caatggttgatgagtcagaaaatgttaccataaagatctaaagatgacaaaaatgaacgtcggtaaaatggataaccaattagagcagacccagtggtct
15875100
--------->
ATHB12
<---------
WOX13(1)
<------------
CBF
-------->
HAHB4
--------->
ATHB51
--------->
ATHB12
<---------
ICU4
<--------
ATHB1
<---------
YAB1
<---------
ATHB12
<---------
YAB1
<---------
ANAC46
--------->
ICU4
--------->
YAB1
<---------
ANAC58
--------->
ARR11(3)
<---------
ATHB51
--------->
YAB1
<---------
ANAC58
<-----------
GT1
--------->
YAB1
-
ZAT18
--------->
TOE2(3)
<---------
MYB46(3)
<---------
AHL20(2)
<---------
ATHB12
<
-------->
DOF2
<-----------
GT1
--------->
ALFIN1
--------->
AHL20(2)
--------->
WOX13(1)
---
taaaagttgaacattaatcaccattcaccagagtggctggaagaaaattgacataaatttatcttgacatgaagtccaatcatctaataattgatttagc
15875200
---------->
DOF2
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
----------->
RAV1(1)
<---------------
AGL15
------->
TEIL
--------->
SPL7
<---------
SPL7
<---------
ANAC58
<---------
ANAC55(2)
<---------
ANAC58
--------->
ANAC55(2)
--------->
ANAC58
<---------------
AtSPL3
--------->
ANAC58
--------------->
AtSPL3
<------
ZmHOX2a(2)
--------------->
AtSPL8
<---------
ANAC46
<-
<---------------
AtSPL8
---------->
DOF2
--------->
ARR11(3)
--------->
ANAC46
<---------------------
WRI1
<------------
CBF
--------->
ICU4
------------>
CBF
---
---------
DOF5.7(2)
--------->
ANAC58
<---------
ARR11(3)
<----------
DOF2
--------->
ANAC58
------>
DOF5.7(2)
--------->
ANAC58
<---------
GLK1(1)
<---------
DAG2
--------->
ANAC58
gataacgtaccacacaaagaagtggcaagaaagcgaattgtggagatcatgccattatcaagtgcaaactttttgacatccaatagacttaagccatttc
15875300
<---------
ANAC46
<-----------
<----------
DOF2
--------->
AHL20(1)
<---------
GLK1(1)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
GLK1(1)
--------->
AHL20(2)
------->
GAMYB
--------->
AHL20(2)
--------->
YAB1
<---------
MYB52(1)
<---------
ICU4
--------->
ANAC55(2)
--------->
AHL20(2)
<---------
YAB1
<---------------
AGL15
<---------
ANAC55(2)
----------->
GT1
--
--------
ICU4
--------------->
AGL15
------------>
CBF
--------->
MYB52(1)
--------->
TOE2(3)
-----
------>
ICU4
--------->
TOE2(3)
--------->
YAB1
--------->
YAB1
--------->
ATHB12
-----
attatcatatagatttcctttatttagtgtattaaatgatcaccaatgctgatcaagaataacggaataaataaacttcattagtaaaaaaaattggcaa
15875400
--------->
ZAT18
<---------------
AGL15
---------->
DOF2
--------->
TOE2(3)
======================================
bZIP_DOF
--------->
TOE1(3)
------->
TEIL
--------->
ANAC46
--------->
YAB1
--------->
ICU4
<---------
GLK1(1)
--------------->
AGL15
<---------
ICU4
--------->
GLK1(1)
----
----------------->
AGL3
<---------
YAB1
--------->
YAB1
--------->
TGA1a
-
CBF
--------->
TOE1(3)
<---------
At4g35610
<---------
YAB1
<---------
TGA1a
------->
GLK1(2)
--------->
YAB1
<---------
ZAT18
<---------
YAB1
--------->
YAB1
<---------
O2
---->
ANAC58
--------->
TOE2(3)
<----------
DOF2
<---------
YAB1
<---------
ICU4
--------->
O2
---->
ANAC58
<-------
TEIL
<-----------------
AGL3
--------->
ICU4
--------->
ICU4
<-----------
RAV1(2)
gaatttgaaccataggtccataaccataaccataaatagtgtgctttagatgatgattatgaatcaaaggcccatt
atgatatccaaggcccaagtgagt
15875500
===================
<---------------
AGL15
--------------->
AGL15
--------->
LBD16
<-----------------
AGL1
----------->
HVH21
------>
MYB46(1)
<---------
At4g35610
------>
MYB83
--------->
ZAT2
--------->
AtMYB61
<---------
At4g35610
<---------
ALFIN1
--------->
At4g35610
--------->
DEAR3(1)
--------->
AtLEC2
<---------
ZAT2
--------->
ANAC46
------>
NtERF2
--------->
GLK1(1)
<---------
ALFIN1
<---------
TOE1(3)
--------->
ANAC46
<---------
GLK1(1)
--------->
At4g35610
<---------
TOE2(3)
--------->
At4g35610
<------
ZmHOX2a(1)
<---------
ANAC58
--------->
WOX13(1)
<---------
RAP2.3(3)
--------->
MYB59
<---------
ANAC58
----------->
GT1
----->
ZAT18
--------->
AHL20(2)
<---------
ZAT6
--------->
At4g35610
--------->
REM1(1)
------
gagcaattaaggcttcataaatttgtctgcgccattcaagtagagttaggatttcagctgctcacggctagcctgctacacctccccaattttgtaataa
15875600
-----
-----
<---------
ARR14(2)
------>
ZmHOX2a(1)
----------------->
AG
<-----------------
AGL1
<---------
HSFB2a(1)
-----
--------->
HSFB2a(1)
-----
--------->
TOE1(3)
<---------
ANAC58
<------
--------->
HSFB2a(2)
<---------
ANAC58
<--------
------>
MYB46(1)
--------->
TOE2(3)
<---------
ANAC46
--------->
ARR14(2)
------>
MYB83
--------->
LBD16
---------->
DOF2
--------->
At4g35610
--------->
LBD16
--------->
AtMYB61
--------->
GLK1(1)
----------->
GT1
<---------
LBD16
<---------
LBD16
<---------
ALFIN1
<---------
HSFB2a(2)
<----------
DOF2
<------
ZmHOX2a(1)
----------------->
AGL1
=================================================================================================
MADS_MADS
--->
YAB1
----------->
RAV1(2)
--------->
GLK1(2)
--------->
ALFIN1
--------->
At4g35610
<---------
LBD16
gaacacaccttcccctgtttccgagaaaccctaatctgaaaaactttgagatgggga
aaagaggaagtagcagcgggagcgttcctattcggggatttac
15875700
--------->
SPL7
<---------
ANAC58
--------->
At5g28300
---------
--------->
LBD16
<--------
<-----------
GT1
------->
GAMYB
----------
---->
ANAC55(2)
<---------
MYB46(3)
<------------
AtMYB77
--------->
ANAC58
---->
ANAC58
<---------
At5g28300
--------->
YAB1
<---------
At5g28300
--------->
ANAC58
---->
ANAC58
--------->
MYB52(1)
<------
ZmHOX2a(1)
--------->
MYB52(1)
----------->
HVH21
---->
ANAC46
--------->
ANAC58
<---------
ANAC46
<---------
At5g28300
<---------
ANAC58
-----
GT1
--------->
ANAC58
--------->
ALFIN1
<---------
ICU4
<---------
ATHB12
--------->
At4g35610
-
GLK1(1)
--------->
GLK1(2)
--------->
MYB52(1)
<---------
YAB1
--------->
MYB46(3)
<---------
At4g35610
gaaacttgttacagaatcaagaaataagggattaactgtggaggagattgttgatgatcaccgttccaataaccgtgaatgcgttcggctgaaacgtcaa
15875800
--------->
ICU4
<---------
YAB1
<--------
>
TOE2(3)
--------->
YAB1
---------->
DOF2
<---------
At4g35610
---
HVH21
---------->
DOF2
--------->
ATHB12
<------
ZmHOX2a(1)
--------->
MYB52(1)
->
GT1
<---------
YAB1
<---------
ATHB12
>>>>>>>>>
TBF1
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
accctcatgatcaaagtcaaacaaatcataaactcattgagcgaagaagaagaggaaagtgaaggaagtaggactaagaaaaaacagaggagagatgatt
15875900
--------->
GLK1(1)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
LBD16
<---------
HSFB2a(2)
<---------
GLK1(1)
<---------
ICU4
--------->
HSFB2a(2)
--------->
GLK1(1)
<---------
YAB1
--------->
REM1(1)
<-----
<---------
ZAT14
--------->
YAB1
--------->
At4g35610
-------
--------->
ZAT14
------->
TEIL
<---------
DAG2
<---------
LBD16
<------
-
YAB1
<------
ZmHOX2a(1)
<---------
CCA1(2)
<---------
At4g35610
--------->
AtLEC2
cagaacagaggaattcggatttatgtatatcatcatcgccttattctgcttcatcatccggaaatgtattgacatcggaagataacatgcagtttgatgt
15876000
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AGI:
At2g37910.1
Description:
cation/hydrogen exchanger, putative (CHX21). similar to CDC48C (EMBRYO DEFECTIVE 1354), ATPase [Arabidopsis thaliana] (TAIR:AT3G01610.1)
Range:
from: 15875477
to: 15876175
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At2g37920.1
Description:
EMB1513 (EMBRYO DEFECTIVE 1513); copper ion transmembrane transporter. similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G07750.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73407.1)
Range:
from: 15875658
to: 15877149
Orientation: Reverse
Links:
TAIR
MIPS
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