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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                            --------->ARR14(1)
                                                                           --------->ARR14(2)
               --------->CCA1(2)                                           <---------ARR11(3)
           --------->HSFB2a(2)         <------ZmHOX2a(2)                   --------->ARR11(3)
       <----------DOF2            ---------->DOF2 --------->REM1(1)        <---------ARR14(2)
     --------->HSFC1(2)          --------->AHL20(2)                        <---------GLK1(2)
     <---------HSFC1(2)------>ZmHOX2a(1)------>ZmHOX2a(2)                --------->ANAC58
--------->HSFC1(1)     ========================HOX2a_HOX2a               --------->ANAC58
<---------HSFC1(1)     =======================HOX2a_HOX2a                ----------->ARR10 ------>ZmHOX2a(2)
--------->HSFB2a(2)  ------>ZmHOX2a(2)<---------ARR11(3)             --------->ANAC58    <---------ARR11(3)
<---------HSFB2a(2)  <---------ICU4   --------->ARR11(3)             --------->ANAC58    --------->ARR11(3)
 
cttctagaagctttcgagatttgatccttacctccattaaagatcgtagagcttcaacatcatcagggtgagaagcaagatactcttcgagtgatctctc  15704100
                                                                    --------->RRTF1(3)
                                                                    --------->RAP2.3(2)
                                                                    --------->RAP2.3(3)
                                                                   --------->ATERF1(1)
                                                                   <------NtERF2
                                                           <---------ALFIN1
                                                           ----------->RAV1(1)
                                                          ----------->HVH21
                                                          <------NtERF2
                                                         ------>NtERF2
                                                         <---------ATERF1(1)
                                                         <-----------HVH21
                                                         --------->ABI4(1)
                                                        --------->ANAC46
                                                        --------->ATERF1(2)
                                                        --------->DEAR3(1)
                                                        --------->RRTF1(2)
                                                        --------->RRTF1(3)
                                                        --------->DREB2C(2)
                                                        --------->RAP2.3(3)
                                                        <---------ATERF1(2)
                                                        --------->RAP2.6(2)
                                                        --------->RAP2.3(2)
                                                       --------->DEAR4(2)
                                                       --------->ATERF1(1)
                                                       <------NtERF2--------->RRTF1(2)
                                                       --------->ORA47(2)
                                                       --------->RRTF1(1)
                                                       --------->RAP2.3(1)
                                                      <---------ATERF1(1)
                                                      <---------RAP2.3(1)
                                                      ------>NtERF2--------->RRTF1(1)
                                                     --------->DEAR3(1)
                                                     <---------DEAR3(1)       --------->LBD16
                                                    <------NtERF2  --------->RAP2.3(1)
                                                    --------->ATERF1(1)      <---------DEAR3(1)
                                                    --------->RAP2.3(1)     <---------LBD16
                                                   ------>NtERF2  <---------ATERF1(1)
                                                   <---------ATERF1(1)    ------->GAMYB
                                                   <---------RAP2.3(1)   --------->MYB46(3)
                                                   <-----------HVH21--------->RAP2.6(2)
                                                  --------->DEAR3(1)--------->ANAC58              --
                         <----------DOF2          <---------DEAR3(1)--------->ANAC58       ---------
                     <<<<<<<<<MYB98             ------->GAMYB<-----------RAV1(2)----------->HVH21 <-
                     <---------MYB52(1)       <---------At5g28300 --------->At4g35610      ---------
                    <-------GAMYB            --------->MYB52(1)  --------->ARR14(2)        <--------
                --------->ARR14(2)           <---------DOF5.7(2) <---------ARR14(2)<---------TOE1(3)
                <---------ARR14(2)      ----------------->AGL3  <------ZmHOX2a(1)  <---------TOE2(3)
<<<<<<<<<TBF1  --------->DOF5.7(2)    --------->GLK1(2)--------->ERF1--------->LBD16       <--------
 
ttcttcttcaaatgaaacgtttccgttactttgtttgagagattccattaacggcgtcgccgccacaggagccgcaatcgccggtgaaggtttgagctgg  15704200
                                  <---------TGA2(2)
                                 ----------->TGA1
                               --------->At4g35610
                            ---------->DOF2
                        <------NtERF2
                       ------>NtERF2
                    ------>NtERF2----------->HVH21
                   <-----------RAV1(1)
                 ----------->RAV1(2)
                 =================RAV    <-------MYC2
                 --------->ZAT2<---------ZAT2<---------ARR14(2)
     --------->ANAC58  --------->LBD16   ------->MYC2                                           <---
<-------TEIL     --------->At4g35610   ------->TEIL                                           ------
------->ARR14(2) <---------ZAT2--------->ZAT2--------->ARR14(2)                              <------
>At4g35610       <---------At4g35610--------->ANAC58                                       <--------
--------ARR14(2)<-----------RAV1(1) --------->ANAC58<------ZmHOX2a(1)                    <---------HSFB2a(1)
>ZAT2--------->ANAC58 ----------->RAV1(1)------->MYC3                                    <---------HSFC1(2)
-ZAT2--------->ANAC46--------->RAP2.3(1) <-------MYC3                                    --------->HSFC1(2)
-At4g35610   --------->ALFIN1  <---------At4g35610<---------TOE2(3)                   <------ZmHOX2a(1)
 
agattcacaaggaacagtgctgctgccgcagtgaagctgacgcatgtggatttgaggattgagagcttcgagtcttgagacttggatgaggaagctttga  15704300
                                    --------->At4g35610
                                    <------ZmHOX2a(2)
                                   --------->GLK1(2)
                                   <---------ARR14(2)
                                   --------->ARR11(3)
                                   --------->ARR14(2)
                                   <---------ARR11(3)
                         ================HOX2a_HOX2a
             <------ZmHOX2a(1)     <---------AGP1
             ===============================HOX2a_HOX2a
     ------->TEIL        ------>ZmHOX2a(2)
   <-------TEIL        --------->ARR11(3)                            --------->ICU4            -----
------WOX13(1)         <---------AGP1------>ZmHOX2a(2)             ---------->DOF2      ---------->DOF2
--->ATHB12   ===================HOX2a_HOX2a   ---------->DOF2  <---------LBD16     --------->ATHB12
---YAB1      ==============================HOX2a_HOX2a    <----------DOF2         --------->ICU4
--DOF2     <---------TOE2(3)      <------ZmHOX2a(1)       <---------DAG2        --------->CCA1(2)
 
ttgaaatgcatttgaaggatgatgttgatctgggtaaggatctgagagagaaagacgaaggctttttggggaaagatgaagagaaatgagtgaaagagag  15704400
                <---------At4g35610
        <---------ANAC46
       <---------At4g35610
       --------->At4g35610
      <---------MYB46(3)
     <--------P --------->At4g35610
    <---------ANAC58                                 ----------->GT1
    <---------ANAC58   <---------ANAC58        ---------->DOF2
    <-------GAMYB      <---------ANAC58    <---------WOX13(1)                    ----------->ARR10
   <---------MYB46(3) <---------At4g35610<---------ICU4                         *TSS
   <------MYB46(1)<---------REM1(1)     <---------YAB1                     <---------ZAT14    >>>>>>
   <------MYB83------->TEIL             --------->ICU4                     --------->ZAT14<------ZmHOX2a(1)
  <---------AtMYB61   --------->At4g35610--------->ATHB12            <-----------GT1    <---------TOE2(3)
------>GT1  <---------REM1(1)        ------------>ATHB5            ---------->DOF2  --------->CCA1(2)
 
gtgatttggttgctgatgaagctgtagcttccctagagactccatgattgcaaagagagagaaaacccctaaaaaccctacagtgagatttgaggaagaa  15704500
                                             <------NtERF2
                                            ------>NtERF2
                            <---------YAB1 <---------ANAC46
                         <---------ARR14(2)<---------DEAR3(1)
            --------->HSFB2a(1)          <---------RAP2.3(1)
            <---------HSFB2a(1)         <---------RAP2.6(2)
            --------->HSFC1(2)         <---------At5g28300
            <---------HSFC1(2)        <-----------GT1                    ----------->TBP
     ---------->DOF2     --------->ARR14(2)--------->DEAR3(1)          <----------DOF2             -
>>>TBF1     --------->ATERF1(1)       --------->MYB52(1)   --------->LBD16                     <----
 
gaagcatcaaaaggagccttcgagttcgaatatgattcaagttacggcgtcgtttttggtccctgaatttgggcctttataagcccaagactagaagagg  15704600
                                                        ----------->HVH21
                                          --------->LBD16
                                   ------>ZmHOX2a(1)  <---------ANAC58
                                  --------->TOE1(3) <------MYB83
                           ------>ZmHOX2a(2)        <------MYB46(1)
                           ===============HOX2a_HOX2a <---------ANAC58
     <---------ICU4       --------->GLK1(1)     <-----------RAV1(1)
    --------->ICU4       --------->ARR11(3) <---------ARR14(2)   <----------DOF2                 ---
 --------->AHL20(2)      <---------ARR11(3) --------->ARR14(2)------>MYB46(1)           ----------->GT1
---------->GT1 --------->YAB1     --------->TOE2(3)<---------AtMYB61        ------>ZmHOX2a(1)  -----
--ZmHOX2a(1)  <---------ATHB12<----------DOF2  <---------YAB1 ------>MYB83------>ZmHOX2a(2)    -----
 
aaatgtaaatatcacaaatcaaaacgctgatctctttccttaatccgaatattgttggtgtgaccaagcttttgtgatcctacttactaagaagtaacaa  15704700
                                       <---------MYB46(3)
                                      <---------YAB1                                         -------
                <---------------AtSPL3<---------WOX13(1)                                    <-------
         --------->YAB1              >>>>>>>>>ARR1                                    --------->MYB46(3)
        <---------YAB1               >>>>>>>>>ARR2                                  --------->ANAC58
      --------->YAB1               <---------YAB1                                   --------->ANAC58
      <---------ICU4         <------ZmHOX2a(1)                                      --------->ANAC46
     --------->ICU4   <---------ZAT6--------->ATHB12                            <-----------GT1
------>YAB1     <---------ICU4 --------->CCA1(2)                             <---------GLK1(1)    --
---->ANAC58   ------->TEIL <---------TOE2(3)                                --------->ARR11(3)    <-
---->ANAC58<---------YAB1  <---------TOE1(3)                                <---------ARR11(3) <----
 
gcacaacaattatcatgaatcagtactgctaaggatatatgattgttgttagaactgttcatcttctgatcagtctgaagatttcacaaaccactctgat  15704800
                                                                           <---------AHL20(1)
                                                                           --------->AHL20(1)
                                                                           <---------ARR11(3)
 <----------DOF2                                                           --------->ARR11(3)
------>ZmHOX2a(2)                                                        ----------->ARR10
-->ATHB12                               <---------AHL20(2)               <---------TOE2(3)
--YAB1                                  <---------YAB1         <XXXXXXXXXXXXXXXXXXXXMIR3440B-5P
------->ARR11(3)                       --------->AHL20(2)   <---------ANAC46                <-------TEIL
--------ARR11(3)      <---------ANAC58 <---------AHL20(1)   <---------ANAC58         --------->MYB52(1)
-----WOX13(1)         <---------ANAC58 --------->AHL20(1)   <---------ANAC58--------->CCA1(2)
 
tgatctttttctgaagttttgaagtacttgctgtgactacaatataattgctgtgtttgagttgtgtggatgggctaagatattggaccaagggattcat  15704900
                                                                                                 ---
                                                                                                ----
                                                                         <---------LBD16        <---
                                                                     --------->ARR14(2)         <---
                                                                     <---------ARR14(2)         ----
                              ----------->GT1                   ------>MYB46(1)                 <---
                          <---------ARR14(2)                    ------>MYB83                   -----
                          --------->ARR14(2)       --------->AHL20(2)<---------ARR11(3)        <----
                       <---------ANAC46          --------->TOE2(3)   --------->ARR11(3)        <----
               >>>>>>>>>>>>>>>>>LFY  <---------ARR11(3)        ----------->RAV1(1)      ---------->DOF2
               <<<<<<<<<<<<<<<<<LFY  --------->ARR11(3)      --------->MYB46(3) ----------->GT1-----
 
ttccaatgctcaaacattttccactggcgaatattgttaaaatctataactacattatttaagaaccaacaatatctgtggaatggtttcacaaagagaa  15705000
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AGI:  At2g37400.1   
Description:  chloroplast lumen common family protein. similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT3G53560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18093.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026)
Range:  from: 15703234    to: 15704481    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g37410.1   
Description:  ATTIM17-2 (Arabidopsis thaliana translocase inner membrane subunit 17-2); P-P-bond-hydrolysis-driven protein transmembrane transporter. Identical to Mitochondrial import inner membrane translocase subunit Tim17 (TIM17) [Arabidopsis Thaliana] (GB:Q9SP35;GB:Q9ZUS5); similar to ATTIM17-1 (Arabidopsis thaliana translocase inner membrane subunit 17-1), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G20350.1); similar to protein translocase [Brassica rapa] (GB:ABL97987.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397)
Range:  from: 15704921    to: 15706354    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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