Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------MYB52(1)           ------>NtERF2          <---------ALFIN1                                           <---------YAB1       ----------->HVH21                                  --------->ZAT6     <----------DOF2     --------->ALFIN1                      --------->AtMYB61 --------->AtMYB61 <---------ZAT14                   <---------REM1(1)    <-----------GT1   <---------ZAT18           -   ttctgaagtgcgacaccgtttttggttctccgatgagaagtagcaccaaaaccagtagtaacaccataactatcagtgcctttgttcatactctccataa  15567000                                                                                    =================                                                                                    --------->TGA1a                             --------->At4g35610                                ------>NtERF2                             <---------At4g35610                               --------->ANAC46<-----   --------->ZAT6            --------->ZAT2      --------->AtMYB61             --------->DEAR3(1)   --------->YAB1    --------->DEAR3(1)       <---------ALFIN1              ------>ZmHOX2a(2) -------   <---------ICU4  --------->MYB52(1)     <---------At4g35610              <------ZmHOX2a(2) <-------  <---------ATHB12<---------ALFIN1        --------->At4g35610     <---------ATHB12  --------->O2 -------->WOX13(1)--------->ANAC46     <---------MYB52(1)         <---------ATHB51  <---------O2    <   cccaatcactactagcattcacaccggctctagctgtctccgatagctccaccttcacactgttaccaatagttgagatcgcagccacttgtccaatggt  15567100                                                                                                    <                                                                                                   --                                                                                               <-----                                ------>ZmHOX2a(1)                                              ------                           <---------ANAC58                                                    <-----                        ------->GAMYB                                                         -------                      --------->ZAT2        --------->MYB46(3)                                <------                --------->CCA1(2)           <---------ATHB12                                  <------       --------->MYB46(3)  <---------ANAC58-------->P                                         ------- ===============================MYC_MYB  --------->MYB46(3)                             ----------->RAV1(2) ------HVH21   <---------ARR14(2)       --------->At4g35610                             <---------At4g35610 -->YAB1       --------->ARR14(2)       <---------At4g35610                <----------DOF2 <---------At4g35610 --ATHB12      <---------GLK1(2)<---------------AGL15                     <---------DAG2--------->At4g35610 ---------GLK1(2)<-------TEIL  --------->TOE2(3)             --------->AtLEC2           --------->LBD16   cagagtctcaccaccaagattcacaactggcttcctaaactcagcaaccattctcttcacttcatccaaatggctacctttcatttgctccgctgcagct  15567200            <------ZmHOX2a(2)                                      <---------ANAC58           --------->ARR14(3)                           --------->LBD16           <---------ARR14(3)                           ------>NtERF2           <-----------ARR10                            <------NtERF2           <---------ARR14(2)                          --------->DEAR3(1)           --------->ARR11(3)                          --------->RAP2.6(2)           <---------ARR11(3)                          --------->RAP2.3(2)  --------->ZAT2                                       ----------->RAV1(1)  <---------ZAT2                                       --------->RRTF1(2) -----------RAV1(2)   --------->WRKY38(1)             --------->RAP2.3(1)       ------>ZmHOX2a(1) ------->LBD16    ------>NtERF2                      --------->LBD16         ------>ZmHOX2a(1) ----ARR14(2)     --------->LBD16                    --------->At4g35610 <---------ALFIN1 --->ARR14(2)   <---------LBD16                      ------>NtERF2 <---------ANAC46 <---------MYB52(1) ----ALFIN1--------->ARR14(2)                        <---------ATERF1(1) --------->ANAC46           - -->ZAT2  <------ZmHOX2a(1)                         --------->DEAR3(1) <---------ALFIN1       <------ ---At4g35610  ------>ZmHOX2a(1)                    --------->ANAC46  <---------ZAT18        <------- ---ZAT2 ----------->ARR10                         --------->ATERF1(1)--------->ZAT18        <------- -->At4g35610------>ZmHOX2a(2)      <----------DOF2<---------LBD16 <---------ANAC58<-------GAMYB-----   ccccagttgagaggatcctccgcgttgatcaccatgttctttgtcttgatgtctccgccgcataacatagcgtccactcctcctccgttgctcttgtgtg  15567300                                                                               ---------->DOF2                                                                      ------>ZmHOX2a(2)                                                                      ===============================HOX2a_HOX2a                                                                     --------->GLK1(1)                                                                     <------ZmHOX2a(2)                                                                     ================================HOX2a_HOX2a                                                                    --------->ARR14(3)                                                                    <---------ARR14(3)                                                                    --------->ARR11(3)                                                                    --------->ARR14(2)  <---------MYB52(1)                                                <---------ARR11(3) ---------->GT1                     <---------YAB1                  <---------ARR14(2)        <------ZmHOX2a(1) ---ZAT18                 ------>ZmHOX2a(2)                         <---------AGP1 ---------->DOF2 --ANAC58               <---------ARR11(3)               ====================HOX2a_HOX2a   --------->CCA1(2) --ANAC58               --------->ARR11(3)               ===================HOX2a_HOX2a <xxxxxxxxxxxx ---->ZAT18        <----------DOF2<-----------GT1        <------ZmHOX2a(1) ---------->DOF2<---------ARR14(2)   ccccgttaatctccatttagacttttgatcttagttttacaatagaagattaactaagaggagattacaagatctctaaaagaaagaaagaagataggag  15567400                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             <-------                      <------ZmHOX2a(1)                                                    <------MYB46(1)                    <---------TOE1(3)                                         <---------MYB46(3)                    <---------TOE2(3)                                     <---------TOE2(3)<------MYB83                    --------->ANAC55(2)                             --------->AHL20(2)     <---------MYB46(3)                <-------GAMYB                                   <---------MYB46(3)     --------->MYB111(2)               <------MYB83                                     <------MYB83 --------->ALFIN1<-------               <------MYB46(1)            <------ZmHOX2a(1)     <------MYB46(1)        --------->MYB55(2)               <---------MYB46(3)         *TSS    --------->At4g35610     --------->DAG2<-------GAMYB           <-----------RAV1(1)           ----------->GT1        ----------->GT1        <---------MYB46(3)          <---------YAB1              ------>ZmHOX2a(1)        <---------AtMYB61       --------->MYB52(2) xxxxxxxxxxsmallRNA(se3)              --------->LBD16          --------->ALFIN1    <---------ZAT6   cttatttgtaatattgttggttaaggaattgtatttgttcctgaggaaaattagatgaatgaagggtggtttaaataaggtggtagtgtttgttggtagg  15567500                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                  <-------GAMYB------                                                                                  <---------ANAC58    <---------ARR14(2)                                                            <---------ANAC58 -MYB46(1)                                                                       <------MYB46(1) -MYB83 <---------ZAT6                                                           <------MYB83 <------ -->MYB46(2)                               <---------YAB1                        --------->MYB55(2) -->MYB111(2)                           --------->ICU4                           <---------MYB46(3) -->MYB59                        <---------------AGL15               ---------->DOF2       <---------AHL20(2) -->MYB111(1)<---------STY1(2)   --------------->AGL15           <---------ZAT6 <---------AtMYB61 --MYB55(1)  --------->STY1(2)  ----------------->AGL3  --------->YAB1         <--------P  --------->AHL20(2) -P --------->REM1(2) <----------DOF2 ---------->DOF2  ----------->GT1      <------ZmHOX2a(1)<-------   taagcgtatagagatagctagtttctttttttcttccatataaagattatagaaaaaatgaaaattagtgagaaagaaggagttggttgagaattaatga  15567600     --------->MYB52(2)                           <---------LBD16   <---------MYB52(1)                            <---------ANAC58  <-----------HVH21                              <---------ANAC46  <-------GAMYB                             <---------YAB1 --->YAB1                                  <---------AHL20(2) ----ICU4                          --------->ALFIN1       <------MYB46(1) -->ICU4                           <---------ANAC46   <---------ARR14(2)      ----------->GT1 -->HAHB4                        <---------MYB46(3)   --------->ARR14(2) --------->DAG2--------->AHL20(2) ---ATHB12                      <---------AtMYB61<---------ANAC58  ----------->GT1 <---------YAB1  <- --TOE2(3)            <---------WOX13(1)  --------->YAB1  <------MYB83  ---------->DOF2<---------AHL20(2)   tgaccgttagatggagagtgagtgatggattttagtggtggagattataattcgtggatttggtttaagtcgcaaaaagagagttatttttaatttgatt  15567700                                                                  ----------->TGA1                                                                  ----------->HVH21       <---------MYB46(3)                                                                 <---------ANAC58         <------MYB83                                          --------->At5g28300   <---------At4g35610       <------MYB46(1)                                         ----------->GT1        --------->At4g35610      <---------MYB46(3)                                         <---------MYB46(3)     <------NtERF2            --------->MYB46(2)                                        --------->ALFIN1       <---------MYB46(3)        --------->MYB111(2)                                  ----------->HVH21        --------->MYB55(2)            <---------AtMYB61                                 <-----------HVH21         <---------MYB46(3)            --------->MYB55(2)                                 <-----------TGA1         <---------ANAC58               <---------DEAR3(1)                                --------->ANAC46          <---------ANAC58              <---------MYB52(1)                              <---------DOF5.7(2)         <---------ANAC46              <---------MYB55(1)       <---------MYB46(3)    <---------WRKY45 --------->DAG2<------MYB83                <--------P       ----------->GT1       <---------WRKY12---------->DOF2<------MYB46(1)            <-------GAMYB      <---------AtMYB61      <---------WRKY38(1)     <---------ANAC58    <---------MYB46(3)      <---------DEAR3(1)    --------->DOF5.7(2)  --------->ALFIN1<---------ANAC58     <---------MYB46(3)      --------->ALFIN1<<<<<<<<<MYB2--------->MYB52(1)<---------MYB46(3)  --------->MYB52(2) ----------GT1   <----------DOF2--------->bZIP60(2)  <---------ANAC58<---------YAB1 <---------LBD16   ttaacacggtggtgaatttctttggttttcgtcaacgtcacggtggtaaaagtggtcgtggctggtggctgacgatagttgcatttcgcggttggtgaga  15567800                  ----------->GT1                                     ----------->GT1                  <---------MYB46(3)                                <---------ANAC46     <---------RVE1(1)                                            <------MYB83       --------->ANAC58     <---------CCA1(1)                                            <------MYB46(1)    --------->ANAC58    <---------GLK1(2)                                            --------->MYB111(1) --------->ANAC46    --------->ARR11(3)                                 <---------YAB1 <---------ANAC46             <-    <---------ARR11(3)                   ---------->DOF2        <--------P          ------->TEIL ----   ctacgagattttttgaagagtggttttttttttttttttggagtaaagcgtttcattgtgatgggagtaggtgtgtataatgtatgaacgtaattgagtc  15567900  Previous    Next  AGI:  At2g37040.1    Description:  PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase. Identical to Phenylalanine ammonia-lyase 1 (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT3G53260.1); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to phenylalanine ammonia-lyase, putative [Arabidopsis thaliana] (TAIR:AT3G10340.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:ABC69917.1); similar to phenylalanine ammonia-lyase [Isatis tinctoria] (GB:ABF50788.1); simil Range:  from: 15564455    to: 15567442    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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