Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------ANAC55(2)                                                                                 <---------ICU4                                                                                --------->ICU4                                                                            --------->AHL20(2)                                                                         --------->AHL20(2)                                                           --------->ARR11(3) --------->YAB1                                                           <---------ARR11(3)<---------AHL20(2)                 ----------->GT1                          --------->CCA1(1)<---------------AGL15            ---------->DOF2                               --------->RVE1(1)==========================    ---------->DOF2                                ----------->GT1   --------->AHL20(2)        <----- -GT1 ----------->GT1 ------->TEIL     ----------------->AGL1        <---------AHL20(2)      --------   caaattgaaagtgaaaaagaagtgaatctaacatatggttttcgaaaataggtgagaaaaatatctagtatttttttatataataagtaagtttattgta  14849000                                                       <---------------AtSPL8                                                    <---------YAB1                                                  <---------ICU4          <---------ARR14(2)                                                 <---------------AGL15    <---------ARR11(3)                                                 ====================================================                                                 --------------->AGL15    --------->ARR14(2)                                      --------->ARR14(2)                 <------ZmHOX2a(1)                          >>>>>>>>>TBF1--------->CCA1(2)        <---------YAB1                   <----------DOF2    --------->ARR11(3)      <---------ICU4             <---------ICU4           <---------ARR14(2)     --------->ICU4<---------RVE1(1)     <---            --------->AHL20(1)       <------ZmHOX2a(1) --------------->AtSPL8             ---------->DOF2 ================================================================MADS_MADS--------->ARR11(3)--------- ----YAB1   <---------AHL20(1)   ---------->DOF2 ------>ZmHOX2a(1) <---------YAB1  <----------DOF2--- ->YAB1  --------->AHL20(2)----------->GT1      --------->TOE2(3)--------->YAB1 <-----------GT1------   attctaaaaaaaaaaatattactttgaagaagaaaaaaaggatatggtttcctcattatagtacttattatgagaggatttttttctttataaaaaggtg  14849100                               ------>ZmHOX2a(1)                         --------->HSFC1(2)                         --------->HSFB2a(1)                         <---------HSFB2a(1)                                  --------->ANAC55(2)  <-                    <-----------RAV1(2)                                   <XXXXXXXXXXXXXXXXXXXXMIR835-3P ==============================MADS_MADS                       --------->GLK1(1)                ----- ------CCA1(2)      <---------LBD16                           <---------ARR11(3)                <---- >DAG2<---------GLK1(2)<------ZmHOX2a(1)                      --------->ARR11(3) ------->TEIL-------- ---->TEIL<----------DOF2<---------HSFC1(2)       ----------->GT1      <----------DOF2       -------- --->ALFIN1    <---------------AGL15            <---------AtLEC2   <---------CCA1(2)      ------>ZmHOX2a(1)   tatctatagatacttttctaattcaggagtttcctacaaatgctctattagcatgtaaaaacaagatttctatctttcttatgtattttttcctataata  14849200                                                                                                <----                                                                                                -----                                                                                             --------                                                                                            <--------                                                                                            <--------                                                                                           --------->ANAC58                                                                                           <---------TGA1a                                                                                           --------->ANAC46                                                                                           <---------ANAC55(2)                                                                                           --------->O2                                                                                           --------->ANAC58                                                                                           --------->ANAC55(1)                                                                                           --------->ANAC55(2)                                                    --------->At4g35610                    --------->bZIP60(2)                                                    <---------ZAT2                         --------->TGA1a      <---------ICU4                                ----------->RAV1(2)                   <---------- ----------GT1                            --------->TOE1(3)                           <------ZmHOX2a(1) ---->ARR11(3)                            <----------DOF2                        --------->ATHB12   < -----AHL20(1)                            --------->TOE2(3)      ------->TEIL   <---------YAB1<------ ->AHL20(2)                        <-----------GT1  <---------At4g35610    --------->ALFIN1<---------O2 ->YAB1 <-----------GT1        <---------YAB1       --------->ZAT2      <------ZmHOX2a(1)<---------ALFIN1   tatactaatttttccattttctattgaaattttcttattacaaactttaaaaacagctgggcaaatgtatgtaaggagtgtgatgataggaacacgtcag  14849300        --------->ZAT14 --------->ANAC46                   --------->AHL20(2) -----At4g35610                     <---------AHL20(2) ---->At4g35610                     ----------->TBP ->TGA2(2)                     <---------AHL20(2)      --------->ANAC58                     <<<<<<<<<TBF1 ---TGA1<---------ZAT14       --------->AHL20(2)       --------->ANAC58                <----------DOF2 ---HVH21                --------->ANAC58          --------->ANAC46               ---------->ID1 -STF1--------->ANAC46   --------->ANAC58          --------->ANAC58     *TSS    <---------ANAC58   -- -------TEIL   ----------->GT1<---------AHL20(2)   --------->ANAC58----------------------->TaNAC69(2) -----bZIP910(2)         --------->ANAC46     ---------->DOF2--------->AHL20(2) <---------ANAC58   --   catacatcactccagtctggcaaaaacacgaattaaatataaataagaaaaagacgcaaacaaaaaaatgtggaatcttgtttcgtctcctttcttcttc  14849400                                                                ====================================HOX2a_HOX2a                                                                ------>ZmHOX2a(2)                                                               --------->CCA1(2)                                                               <------ZmHOX2a(2)                                                              <---------ARR14(2)                                                              --------->ARR14(3)                                                              <---------ARR11(3)                    <                                                              --------->ARR11(3)                    <                                                              <---------ARR14(3)                    -                                                              --------->AGP1                    -----                                                          ---------->DOF2                     <------                                                         --------->AHL20(2)                   -------                                             <---------ANAC46 <---------AGP1            <---------STY1(2)              <-------TEIL                   <---------ANAC58 --------->ARR14(2)       --------->MYB52(2)          <---------TOE2(3)                  <---------ANAC58--------->RVE1(1)       <--------P<----- ------->WRKY12                       ------>ZmHOX2a(2)  <---------AHL20(2) <----------DOF2  <------ZmHOX2a(1) --------->HVH21               <----------DOF2  <---------LBD16=====================================HOX2a_HOX2a   gttgacacaattagggttcacttcaattctcttctttggatcgtattacttggggaaatttaaagatctggctctgggctcttctgggttagctaggatc  14849500           ---------->DOF2       --------->At4g35610       <---------At4g35610     <-----------RAV1(2)                                                  <---------AHL20(1) ---------GLK1(2)                                                         --------->ARR11(3) ---------ARR14(2)                                             <------MYB46(1) -------->ARR14(2)                            <------------------------ANAC81 ->ZmHOX2a(2)                              <----------DOF2     <------MYB83 ---ARR14(2)                      --------->YAB1  <-----------GT1   ----------->GT1               --- -->ARR14(2)           <----------DOF2     <---------DAG2    <---------ANAC58                -------- -ZmHOX2a(2)   <---------ARR11(3) --------->TOE2(3)          <---------ANAC58                <-------   caaattctcaggtgaaagacctgaacttttgctccatcttaatcgctttttttttcttctctggctggtctggtaatatatacagagaattgatagtgta  14849600                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                  <---------TOE1(2)              <---------ANAC58                                               <---------ANAC58                  <---------ANAC58----                                               <---------ANAC58            --------->DAG2      ------    <---------YAB1                    <---------At4g35610              <------ZmHOX2a(1)       <-----  ----------->GT1                     <---------ZAT2                   ==============================  --------->YAB1           ------>ZmHOX2a(2)   <---------ANAC46 <---------ANAC46--------->At4g35610 ------>ICU4           <---------YAB1 --------->At4g35610      <-----------RAV1(2)            <------ZmHOX2a(1) --->GT1          <---------ZAT6      --------->ZAT2          <-------TEIL---------->DOF2   <-------- --ZAT6      <----------DOF2    --------->GLK1(2) <---------TOE2(2)    ==============================   agaattgtaattctgctttagtgttttgatcgagtttctgagcttagtatcgtgggtttttgggttcaggggaggataaagtagcttaagaactgaggat  14849700                                                                <---------ICU4                                                                -------->HAHB4                                                                --------->ATHB12                                                                --------->YAB1 --ZmHOX2a(2)                                                  <---------ATHB12 --->GLK1(2)                                              <---------ANAC46 ----ARR11(3)                                            <---------MYB46(3) --->ARR11(3)                                            --------->MYB59 ------ARR10                    <---------YAB1       --------->MYB52(2) -->ZmHOX2a(2)         --------->At4g35610           <---------MYB46(3)                         <---- --->ARR14(2)          <---------At4g35610       --------->ATHB12                           --------- ----ARR14(2)          --------->ZAT2      --------->HSFB2a(2) <---------YAB1               --------- ==HOX2a_HOX2a         <---------ZAT2      <---------HSFB2a(2) --------->ICU4               <-------- -TOE2(3)          <-----------HVH21    --------->ARR14(2)<------MYB83               ----------->GT1 ===HOX2a_HOX2a   <----------DOF2       <---------ARR14(2)<------MYB46(1)         <----------DOF2   ctacttacttaagctaggcactttcagctgaattttgattcgtttctggactcattagttgggtaatgattagttttagtttctctttggtgaatatttt  14849800                                                                                            <------MYB46(1)                                                                                            <--------                                                                                           <---------AtMYB61                                                                                          <--------P                                                                                         <---------ANAC58                                                                                         <-------GAMYB                                                                                         <---------ANAC58                                                                                        <---------MYB46(3)                                                                                        --------->MYB52(2)                                                                                        --------->MYB55(2)                                                                                        <------MYB46(1)                                                                                        <------MYB83                                                                                       <---------AtMYB61                                                                                      <---------MYB52(1)                                                                                    <---------MYB46(3)      <---------ANAC55(2)                                                           <-----------RAV1(1)      <------MYB46(1)                                                           <---------ANAC58      --------->ANAC55(2)                                                       <---------ANAC46      ----------->GT1                                                           <------MYB83<------MYB83      <------MYB83                                  --------->YAB1              <---------ANAC58     --------->MYB46(2)                             <------ZmHOX2a(1)           <------MYB46(1)     --------->MYB59                       <--------P                          --------->MYB59 --------->ATHB12                         <-------GAMYB                        <---------MYB46(3) -----YAB1                               <---------MYB46(3)                <-----------RAV1(1) >ARR11(3)                              <---------AtMYB61<---------YAB1  <------MYB83<-------GAMYB  < >AHL20(1)  <-----------GT1   --------->ATHB12    <---------TOE2(3)      <------MYB46(1)--------->ATHB12 -AHL20(1) --------->ICU4    <---------YAB1<---------WOX13(1)       --------->ICU4  <---------DEAR3(2)   gtttgattaggtaattactagacagtagtttctcattgggttttggttgatttaggataattcttgggtcatatttggtgttgggtctgttggttggttt  14849900  Previous    Next  AGI:  At2g35230.1    Description:  VQ motif-containing protein. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G32610.1); similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G32610.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO63409.1); contains InterPro domain VQ (InterPro:IPR008889) Range:  from: 14849372    to: 14851513    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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