Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------LBD16            --------->YAB1    <----------DOF2  ------->TEIL             --------->HSFB2a(2) ------------>AtSPL8 <---------ARR11(3)                      <-----------GT1 -------------AtSPL8 --------->ARR11(3)                 <---------YAB1                  <---------ARR11(3) -------TOE2(3)    <---------AHL20(2)                  <---------ARR11(3)               --------->ARR11(3) --->AHL20(2)     --------->AHL20(2)                   --------->ARR11(3)     --------->YAB1 ----AHL20(2)  <------ZmHOX2a(1)                 <-----------GT1             ----------->GT1   aatgtactttcttatcaggattaaatcttctgtaatttagagtagtttttttaacaagataattaacaaacttagagtaatgaaaattgagatgttcagt  14531400                                                                                           --------->ANAC46                               <------MYB83--------->HSFB2a(1)                             <---------bZIP60(1)                               <------MYB46(1)                                             --------->ETT(2)                              <---------MYB46(3)                                           --------->bZIP60(1)                             --------->ALFIN1                                           <XXXXXXXXXXXX            <---------------AGL15     --------->ANAC58 --------->ATHB12               <----------DOF2           <-----------GT1--------->DAG2   <---------HSFB2a(1) <----------DOF2  <---------YAB1    ---    --------->YAB1     ---------->DOF2--------->ANAC58<---------YAB1  --------->YAB1  ===============   tttcactcatatttcacattttggtgaaagagtgggtagtatgcaacgttctaagtatgtttggactttgtatcatgttgttttgattctttgacgacat  14531500                         ------->TEIL                                 <-----------GT1                        <---------CCA1(2)                     <-----------HVH21                      --------->ALFIN1                        <-----------TGA1                    <---------O2                             --------->O2                    <---------ANAC46                         <---------TGA1a                    <---------ANAC55(1)                      --------->ANAC58                    <---------ANAC55(2)                      <---------ANAC55(2)                    --------->O2                             --------->ANAC46                    <---------TGA1a                          --------->ANAC58    --------->ANAC58                    <---------ANAC58                         --------->bZIP60(2) --------->O2                    <---------bZIP60(2)                      --------->ANAC55(2) --------->bZIP60(2)                    <---------ANAC58                         --------->ANAC55(1) --------->TGA1a                 <---------ATHB12                            <---------O2        --------->ANAC58                 ----------->HVH21                         <---------ALFIN1      --------->ANAC55(2)                 ----------->TGA1             =========================bZIP_DOF  <---------TGA1a XXXXXXXXMIR861-3P ----------->STF1           =============================================bZIP_DOF -------------->AGL1=====================================bZIP_DOF  --------->ARR14(2) =============================bZIP_DOF        ---------->DOF2--------->TGA1a--------->ALFIN1<<<<<<<<<   gtctatttgggaaacaccaatgacgtgtaccttgagactgatacgattcaaagggatagaaacacgtcagatttacaagtggcacgtcttcaatggacaa  14531600                              --------->ARR11(3)                              <---------ARR11(3)                                                <----                             <---------GLK1(1)                                 --------->ZAT2   -----                             <---------CCA1(1)                                 --------->At4g35610                             <---------RVE1(1)                                 <---------At4g35610                             --------->GLK1(1)                                 <---------ZAT2   <----                            --------->ARR11(3)                                ------>NtERF2     -----                            <---------ARR11(3)                          --------->At4g35610    ------                     --------->TOE1(2)       --------->ZAT6         <---------ARR11(3) --------->ANAC58 <<<<<<<<LFY    ----------->ARR10    <---------AHL20(2)             --------->GLK1(2)  --------->ANAC58   tgggtattccaatatgctaagatgctacgagatatctaatttatctaacacaactcaattccaaaccaaaaatctgatgccagctcgacaagacaaaaaa  14531700                                                                   --------->ARR11(3)                                                                   <---------ARR11(3)                    --------->MYB46(3)                           <---------AHL20(2)                   --------->ANAC58                             <---------AHL20(2)  --------->At4g35610            --------->ANAC58               --------->AHL20(2)  <---------At4g35610    --------->YAB1                  --------->ANAC58 -------ARR10      --------->ANAC58               <---------ANAC55(2) ---->ARR11(3)    ------->GAMYB  --------->ANAC58 --------->ANAC55(2)                              -- -----ARR11(3)   <---------MYB55(2)      <---------TOE2(3)    XXXXXXXXXXXXXXXXXXXX>MIR829.2  <-------TEIL ---->GLK1(2)    <---------MYB111(2)    >>>>>>>>>WRKY18  --------->ANAC58                    ------->TEIL --->RVE1(1)     --------->MYB46(3)  <------------CBF  --------->CCA1(2)        ------------>CBF   <-   tctaagctcaaaaatgtcaacaaccaatagaaatcaaggcattgacgatatcacgagataagcaaattaaatcttcaagttttgcaattcatatgtacgt  14531800                                                                                                    <                                                                                <---------ALFIN1   <-                            --------->STY1(2)                                 ----------->RAV1(1)  <-                           ------>MYB46(1)                                    <---------ALFIN1     --                           ------>MYB83                                       --------->DEAR3(1)   <-                      --------->ARR14(2)                                    ------>NtERF2         ---                     <---------MYB52(1)                                <---------ANAC58           ---                    --------->At5g28300                           <----------DOF2        --------->ANAC46 --------->TBP     --------->ANAC46*TSS                   ---------->DOF2  --------->ANAC46      <--- --------YAB1 --------->AtMYB61  ------------>CBF     <-----------GT1  <---------ANAC58<---------At5g28300   tataaatacccaaaaacctcaccgtaacctagctatccaatttcatcacatcttattaactaaagagccttttacttgcgccacactctcaccgcaatgg  14531900                                                              ------>NtERF2                                                              --------->ATERF1(1)                                                              <------NtERF2                                                              <---------ATERF1(1)                                                             ------>NtERF2                                                             <---------ATERF1(1)                                                             <---------RAP2.3(1)                                       --------->DAG2       --------->DEAR3(1)                                      ---------->DOF2       <---------DEAR3(1)                                     --------->ARR14(2)    <------NtERF2                                     ---------->DOF2       --------->ATERF1(1)                    ---                                   --------->LBD16        --------->LBD16                       -----                                 <---------LBD16          ------>NtERF2                    <---------                               <---------WRKY18(1)        <---------ATERF1(1)              --------->YAB1 ------NtERF2                 --------->WRKY12xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->MYB46(3) --------ATERF1(1)            --------->WRKY38(1)        --------->ANAC46              <------NtERF2 --------RAP2.6(3)            --------->WRKY45---------->DOF2--------->RAP2.6(2) --------->ATERF1(1) ---->NtERF2                  ----------->HVH21 <---------TOE1(3)                --------->DEAR3(2) -----NtERF2                <----------DOF2  <---------MYB52(1)     --------->LBD16   --------->RAP2.6(2) ------>DEAR3(1)         ------>ZmHOX2a(1)  <-------GAMYB<---------DEAR3(1)    <---------ARR14(2) --- ------>RAP2.6(2)      ----------->RAV1(2)  <---------RAP2.6(3)--------->ATERF1(1)--------->DEAR3(1) ------RAP2.6(2)    ------>ZmHOX2a(1)<---------ARR14(2) <---------LBD16        --------->ARR14(2) ---   ccgcctcgacaatggctctctcctctcctgctttgaccggaaaggccgttaagctatccccggcggcctccgaagtatttggaaccggccgaatcaccat  14532000                                                ----------->HVH21                                               ------>ZmHOX2a(2)                                          <---------ANAC55(2)                                          --------->ANAC55(2)                                    <---                                <---------At4g35610                                             -----                                <------NtERF2 <------ZmHOX2a(2)                             <--------           --------->ANAC58 --------->LBD16  --------->ARR14(2)                             ---------           --------->ANAC58--------->ANAC46  <---------ARR14(2)                             --------- ---------->DOF2          --------->SPL7  --------->ANAC58                            --------->DEAR3(1) ------>ANAC58        <-------TEIL        --------->ANAC58                           --------->ATERF1(1) ---->AtLEC2    --------->MYB52(1)     <---------SPL7                           <---------MYB52(1) --GT1   ---------->DOF2  <---------LBD16--------->SPL7                        --------->LBD16 ------ ------>ANAC46 <---------ALFIN1 --------->At4g35610    <-----------HVH21     <---------LBD16<-------- ------>ANAC58--------->ZAT18<---------MYB52(1)--------->DEAR3(2)     <-------TEIL ------------------   gcgcaaagcctccaagcccaccggtccatccggcagcccatggtacggatccgaccgagtcaagtacttgggtccattctccggtgagcctccgagctac  14532100                       <---------ANAC46                       <---------ANAC55(2)                       <---------ANAC58                     --------->ARR11(3)                       --------->ANAC55(2)                  --------->ARR14(3)                       <---------ANAC55(1)                  <---------ARR11(3)                <---------MYB52(1)                       --------->LBD16               --------->LBD16                          --------->LBD16        <---------GLK1(1)                            <------ZmHOX2a(2)   --------->ZAT14     <---------ANAC58              =========================HOX2a_HOX2a   <---------ZAT14    <---------LBD16               --------->ARR14(2)                xxxxxxxxxxxxxxx ------MYB59  --------->LBD16                       <---------ARR14(2)           xxxxxxxxxxxxxxxxxxxx ---->REM1(1)<---------LBD16                      --------->DEAR3(1)            <---------At4g35610 -At4g35610  --------->LBD16                    --------->LBD16                 --------->At4g35610 - >ZAT2  --------->GLK1(1)                       ------>NtERF2                <---------MYB52(1)   <-- >At4g35610 <---------LBD16   <---------PCF2   --------->ANAC46             <-----------HVH21    ---- -->P  <---------HSFB2a(1)   ----------->HVH21--------->MYB46(3)        <---------ARR14(2)       <--- -ZAT2 --------->HSFB2a(1) --------->ALFIN1 --------->ARR14(2)          --------->ARR14(2)      ----- ----->TaNAC69(2) <---------MYB46(3)        <---------ARR14(2)         <------ZmHOX2a(1)       ------   ctcactggagagttccccggtgattacgggtgggacactgccggtctatccgccgatcccgagaccttcgctaggaaccgtgagctagaagttatccaca  14532200             xxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->ZAT2          <---------ZAT2             --------->LBD16         --------->AtLEC2          <---------LBD16                                          <------MYB46(1) xxxxxxxxxx>smallRNA(si3)   <---------ANAC46                                                <------MYB83 x>smallRNA(se3)            <---------ANAC58                                     <------MYB83 -------->At4g35610         <---------ANAC58                                     <------MYB46(1) ---------RAV1(2)        <---------DEAR3(1)                  <---------ZAT14    --------->MYB59 ----->At4g35610     --------->STY1(1)                      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------At4g35610     <---------STY1(1)               --------->MYB52(1)         <---------AtMYB61 ------>RAV1(1)  ------>NtERF2     ----------->RAV1(2)    <---------ANAC46    <---------MYB52(1)    < --->ANAC46 <---------LBD16<------NtERF2            <------ZmHOX2a(1)  ---------->DOF2      <--------   gcagatgggccatgctcggagccctaggctgcgttttccctgagctattggctaggaacggagtgaagttcggagaagcggtttggttcaaggctggttc  14532300  Previous    Next  AGI:  At2g34430.1    Description:  LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding. Identical to Chlorophyll a-b binding protein 2, chloroplast precursor (CAB2B) [Arabidopsis Thaliana] (GB:P04778;GB:P83754); similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29930.1); similar to Chlorophyll a-b binding protein 1, chloroplast precursor (LHCII type I CAB-1) (LHCP) (GB:P13851); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 14531835    to: 14532842    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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