Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->ARR14(2)     --------->MYB46(3)     <---------ATERF1(2)    --------->DEAR3(2)                       -------->P   --------->MYB52(1)                        --------->MYB52(1) --------->ZAT14   -------->P     <---------ARR14(2)      <---------At4g35610   --------->ZAT18 ---MYB46(1)     <------ZmHOX2a(1)        --------->At4g35610   <---------ZAT14 ---MYB83  <---------MYB52(1)      <-------GAMYB           <---------ANAC58 ---P--------->ATERF1(2)       --------->GLK1(2)           <---------ANAC58 -GAMYB   <-------GAMYB       <---------GLK1(2)     <-----------ARR10 --ANAC46<---------MYB46(3)   --------->ARR14(2)  ---------->DOF2         --------->TOE1(2) <-------- >MYB59  --------->MYB55(2)   <---------ARR14(2)--------->LBD16<XXXXXXXXXXXXXXXXXXXXMIR851-5P   ggacttaccggccgttggaggaaacacttgtggattctgttgagagctaccgcaaagctaagcttgtggactgaaaactgggaacgaatagcatatgagt  14235600                                  --------->ANAC58                                  --------->ANAC58                                  --------->ANAC46                             --------->ZAT14                             --------->At4g35610                         <---------ARR14(2)                <---------ANAC55(1)                --------->ANAC55(2)                                                  <---------ICU4                <---------ANAC46<---------ALFIN1                                     --------->YAB1                <---------ANAC55(2)    <----------DOF2                              <---------ATHB12          <-------MYC3   --------->ARR14(2)                                    <-----------GT1          ------->MYC3  ------>ZmHOX2a(1)                --------->YAB1   <---------ARR11(3) -YAB1<-------TEIL      <---------CCA1(2)     <----------DOF2          ----------->RAV1(1)------->TEIL   gttttgggtccatgtgttaagtgttcctatctgcacacgctctttcatcttttactcaagaataagagttgtgcaacatattttccatcatgaacttctg  14235700                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                      ------>MYB46(1)                    --------->ARR11(3)         <                                      ------>MYB83      <---------HSFB2a(2)         <-------TEIL    <                  --------->ANAC46   --------->WOX13(1) --------->HSFB2a(2)   <----------DOF2       <         <----------DOF2   <----------DOF2              --------->TOE2(3)<---------ARR11(3)         <      <-----------GT1  <---------MYB52(1)            ------>ZmHOX2a(1)  <---------CCA1(2)        <---   agtttttgttactttcttagacaccattacttttatgaccaatctacaattactccttccataactatgttccaatatctctttgatacgttccaatttc  14235800                                                                                               XXXXXX          <---------TOE2(3)                                                                  --------  ------>MYB46(1)                                                                            <-------TEIL  ------>MYB83                                         <-----------GT1                    --------->At4g35610 ---------MYB59                                --------->ANAC46                        <---------At4g35610 ---------MYB111(1)                           ------->GAMYB                        <---------ANAC58 < ---------MYB46(2)                           --------->ANAC58                      <---------ANAC46 - ---------MYB111(2)       <---------ICU4     --------->ANAC58          --------->TOE2(3)  <---------At4g35610 --------GT1<------ZmHOX2a(1)              ---------->DOF2          <-----------GT1<---------ANAC58--   tacctacttacaaaggataacttcaccattaatacatgaaatcagtaacgcacaacttcaccattcgaattaacctctaagcctagcgtagcagatgcac  14235900                                                                                                    -      <---------At4g35610                      <---------MYB52(2)                                   <      --------->At4g35610                   --------->MYB46(3)                                     -- XXXXXXXXXXXXXX>MIR408                    <-----------GT1                                          <- ->ZAT18----------->HVH21            --------->ICU4   <-----------RAV1(2)                          -- ---------ARR11(3)              --------->ANAC58   --------->ANAC58                               --- -------->ARR11(3)              --------->ANAC46   --------->ANAC58          --------->ZAT18      <-- ------->REM1(1)                --------->ANAC58 ---------->DOF2 ------->TEIL<---------ZAT18     <<<<   tacatcttggctgaccatgggactaaaaaaacattcgcaatatttaacaactaaagccaggttaatggacctgtattagggcccaaaccaggcccgttta  14236000       <---------DAG2                                                          --------->MYB46(2)       <----------DOF2                                                         --------->MYB52(2) -------->ARR14(2)                              *TSS                         <---------MYB52(1) ---------ARR14(2)                            <----------DOF2              <---------ANAC46 ------->CCA1(2)                         --------->GLK1(2)                 <---------ANAC58 --------GLK1(1)                        --------->ARR14(2)                 <---------ANAC58 ------->GLK1(1)                        <---------ARR14(2)       ------>NtERF2 ----------->GT1 ------>ARR11(3)                        <---------GLK1(2)        --------->LBD16 -------ARR11(3)   <----------DOF2    ----------->ARR10         <---------DEAR3(1) <<<<<RAP2.2    <-----------GT1    <---------STY1(2)           <---------LBD16 <---------MYB46(3)   gatatccgactttttttttaactttgcccatctcgatagctagattctcttttccctcttccttctccggcgaagttgcgttagttaaacagagagtcat  14236100                                                                                        <---------HSFC1(2)                                                                                        --------->HSFC1(2)                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                     <---------ZAT2                                                                                     --------->ZAT2                                                                                     --------->At4g35610                                                                                     <---------At4g35610                                                                                    ----------->RAV1(1)                                                                                   <------NtERF2                                                                                   <-----------RAV1(2)                                                                                  --------->At4g35610                                                                                  <------NtERF2                                                                                  --------->LBD16                                                                                  <---------At4g35610                                                                                  ------>NtERF2                                                                                 --------->RRTF1(2)                                                                                 --------->DEAR3(1)                                                                                 --------->RAP2.3(3)                                                                                 --------->RRTF1(3)                                                                                 ----------->RAV1(1)                                                                                 --------->RAP2.3(2)                                                                                --------->RAP2.3(1)                                                                                --------->ORA47(2)                                                                                --------->ERF1                                                                                --------->RAP2.6(1)                                                                                --------->DEAR4(2)                                                                                <------NtERF2                                                                                --------->ATERF1(1)                         <------ZmHOX2a(2)                                      --------->RRTF1(1)                        --------->GLK1(2)                                      <---------DEAR4(2)                        --------->ARR14(2)                                     <---------ORA47(2)                        <---------AGP1                                         <---------RAP2.3(1)                        --------->ARR11(3)                                     <---------RRTF1(1)                        <---------ARR14(2)                                     <---------ATERF1(1)                        <-----------ARR10                                     <---------RAP2.3(2)                       <------NtERF2                                          --------->DEAR3(1)                       <---------ARR14(1)                                     <---------DEAR3(1)                       <---------CCA1(2)                                     --------->ATERF1(1)                    <------NtERF2                                            <---------ABI4(2)                   ------>NtERF2                                             <------NtERF2                 <---------LBD16                                             --------->RAP2.3(1)               <------ZmHOX2a(2)                                            <---------ERF1              <---------ARR14(2)             <---------ALFIN1              <---------DEAR3(1)       <              --------->ARR14(2)----------->ARR10                          <---------RAP2.3(3)      <            --------->LBD16 <---------LBD16 <---------ZAT14             --------->HSFB2a(2)         -       <---------At4g35610  --------->LBD16 <---------ZAT18  --------->LBD16<---------ATERF1(1)    <-       --------->At4g35610------>ZmHOX2a(2) --------->ZAT14 --------->ANAC46<---------RAP2.3(1)   <--    ---------->DOF2--------->LBD16       --------->LBD16    --------->HSFB2a(2)------>NtERF2      <--  --------->AtLEC2<---------LBD16      <---------LBD16  <----------DOF2 <---------HSFB2a(2)      ----   ggccatgaaagctcccgatcccggcggatctggggaaattctcccgagcactccctctctttccgaaactacgtctggaggcgccgcagcagcttctaag  14236200                                                 --------->STY1(2)                                                 <---------STY1(2)                                                ------>MYB83                                         <---------ANAC55(2)                                         --------->ANAC58           <---------RAP2.6(3)           --------->ANAC58           ------>NtERF2                 --------->ANAC55(2) ------NtERF2                            --------->ANAC46 ---------At4g35610                     --------------->AtSPL3                    <----------DOF2 -------->At4g35610                    <-----------GT1                    ------>NtERF2 --------DEAR3(2)                   <---------ICU4                        --------->LBD16        <--- -------RAP2.3(3)            ----------->GT1  <---------MYB59            --------->DEAR3(1)   <------ -------DEAR3(1)          --------->GLK1(1) ------->TEIL               ------->GAMYB   <---------WOX13(1) ----->RAP2.6(3)  <<<<<<<<<TBF1  --------->YAB1 ------>MYB46(1)       --------->DEAR3(1)--------->AHL20(2)   tcggctcaattgccgtcttcttcttccgatatcgataatattcacgtacctagctactccagtaagtctgcaacgccgagaaaactttgatttattctac  14236300                                                             <---------AtLEC2                                                       <---------MYB46(3)                                                       <------MYB46(1)             <---------ANAC58                                                       <------MYB83                <---------ANAC58                                                      <---------AtMYB61      <---------YAB1                     --------------->AtSPL8          <--------P             <---------TOE2(3)       -                  --------->ARR14(2)               <------MYB46(1)         --------->MYB52(1)       -               <---------ANAC55(2)            --------->WOX13(1)           <---------DOF5.7(2)      -               --------->ANAC55(2)         <-----------------AGL1    <---------DDF1<---------ANAC46<-           <---------ANAC58      <---------ANAC46  <------MYB83      ----------->RAV1(1) <-------TEIL  --------->ZAT14 <---------ARR14(2)       <-----------------AG     --------->DREB2C(2)<-----------HVH21  <---------ZAT14 <---------GLK1(2)       <-----------GT1<<<<<<<<<MYB2   --------->DOF5.7(2)<-------- -------DOF2  <---------LBD16  <---------At5g28300--------->MYB59 ------->TEIL--------->ATHB12    --- -----GT1  <---------ANAC58<---------------AtSPL3 <---------TOE2(3)--------->DEAR3(2)  <---------SPL7   tttcttcactgtttcttacggattttgtacttgtaccgtctatttaaccaattaggttggttttcatggaccgacattaacgattgcgaggtccggtcac  14236400        <-----------GT1   --------->AtLEC2   <---------GLK1(2) ------>ZmHOX2a(2)  <------NtERF2    --------->ARR14(2) <---------RAP2.6(3)<------ZmHOX2a(2) --------->LBD16   --------->AGP1                                                              ------ -------->HSFB2a(2)<---------ARR14(2)                                                         <------ -------->RAP2.6(2)--------->ARR14(3)                                                      ------>MYB83 -------->LBD16    <---------ARR11(3)                      <---------ARR14(2) <---------ZAT14 ------- --------LBD16     --------->ARR11(3)                     <------ZmHOX2a(1)   --------->ZAT14 ------>ZmHOX2a(1) ---HVH21          <---------ARR14(3)          --------->ZAT6      <--------HAHB4          ------>MYB46(1) ------>MYB52(1)<---------HSFB2a(2)          <-----------GT1      --------->ICU4         --------->AtMYB61   tgccggaatttttcgattcgagatcttcatccaaaaaccctaagttttatctctacttgaggaactcgattattaagcagtacagagacgaccatcctcg  14236500  Previous    Next  AGI:  At2g33600.1    Description:  cinnamoyl-CoA reductase family. similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G33590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66289.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 14233842    to: 14235787    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g33610.1    Description:  ATSWI3B (Arabidopsis thaliana switching protein 3B); DNA binding. similar to ATSWI3A (Arabidopsis thaliana switching protein 3A), DNA binding [Arabidopsis thaliana] (TAIR:AT2G47620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66286.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain SWIRM (InterPro:IPR007526); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 14236048    to: 14238385    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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