Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                               --------->AHL20(2)                                                                       ----------->GT1       <-------                                                                     <---------ANAC46     <----------                                                                  ----------->HVH21 --------->AHL20(1)                                          ---------->DOF2      --------------->AGL15<---------AHL20(1)                                      --------->ANAC58         ======================================           ----------->HVH21          --------->ANAC46        <-----------------AGL1--------->AHL20(2)          <-----------HVH21           --------->ANAC58        ----------------->AGL1<---------AHL20(2) -------CCA1(2)                       --------->AtLEC2   <---------HSFB2a(1)   <---------AHL20(2) --At4g35610         <----------DOF2---------->DOF2  *TSS--------->HSFB2a(1)  --------->AHL20(2) --GT1   --------->ANAC46  <---------GLK1(1)       <---------ANAC46--------->ATHB12--------->AHL20(2)   atttctcttctccgtcacagtctctttgggtttcccagacaagcaaaagaatggagggaacgtttccagtgatgggaaaattaaaatatatttcactttt  13984600                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                    <---------ARR11(1)                                                                    --------->GLK1(2)                                                              <-----------GT1                                                           <---------YAB1                                                         -------->ATHB1                                                        --------->ICU4                                                        <---------AHL20(2)                                                        --------->AHL20(2)                      --------->AHL20(2)                --------->AHL20(1)           ----------->GT1                ----------->GT1<---------ICU4 ---DOF2  --------->ZAT6             <---------AHL20(2) <---------YAB1 --DAG2  <---------At5g28300        --------->YAB1 --------------->AGL15------>ZmHOX2a(1) -GT1   <-----------GT1       ----------->GT1  --------->KAN4(2)   <---------ARR14(1)          <----- ==================================================================MADS_MADS                  <------   cagtcattttttacagtaacaaaatttaagaactgaaataaaaatggtttattccaaaattattaaaccgaatccttcaaaacttattctatttctaggg  13984700                                                                 <---------MYB46(3)                                                                 ----------->GT1               ------                                                        --------->AHL20(2)                 <---------ANAC46       <-------GAMYB                                    <---------AHL20(2)     --------->AHL20(2)      --------->LBD16                                   --------->AHL20(1)     --------->AHL20(1)    <---------LBD16                               --------->ANAC58             <---------AHL20(2) ----ZAT6        <---------WOX13(1)           ----------->GT1--------->ATHB12 <---------AHL20(2) ---TOE1(3)<---------AtLEC2         <---------ICU4--------->ANAC58            --------->AHL20(2)    -   ttatgctccggttgaatggattgaaattcccaacttattcatttcaaatagtaagaaataaaatgaatggttgtaagaaattaaattagaccgtcgtggt  13984800                                                                                             --------                                                                                      --------->LBD16                                                                                     --------->ANAC46                                                                                    <-------MYC3                                                                                    ------->MYC3                                                                                    ------->MYC2                                                                                    <-------MYC2<----                                                                                   --------->ANAC46                                                                                   --------->TGA1a                                                                                   ==================bZIP_DOF                                                                                   --------->ANAC58                                                                                   --------->ANAC58 -                                                                                   ==================bZIP_DOF                                                 <-----------GT1                   <---------TGA1a <-                                               <---------AHL20(2)                <---------ALFIN1<---            --------->ATHB12            ----------->GT1                 --------->ANAC46     ========           <---------AHL20(2)           --------->LBD16--------->SPL7   --------->ANAC58  ===========           <---------YAB1   --------->AHL20(2) --------->AHL20(2)       --------->ANAC58  ---------->DOF2 --->At5g28300       --------->LBD16   --------->RAP2.6(2)           <---------ARR14(2)--------->ANAC58 -------->YAB1   <-----------GT1      <---------LBD16<---------SPL7  --------->ARR14(2)--------->ANAC58   aattgtaagaaatttcattgaaccggactataaattagaagccggataattaaaccgtaccagcgcttggagaaacgccagacacacgcgcgaaaagaag  13984900                                                                                           --------->TGA2(2)                                                                                          <----------                                                                                          <----------                                                            --------->TGA1a              --------->ANAC58                                                            --------->ANAC46             <---------bZIP60(1)                                                        <---------ALFIN1                 ============                                                        --------->AtMYB61                --------->O2                                                       --------->MYB46(3)                <---------O2                                                       --------->ANAC46                  <---------TGA1a                                                   ------>ZmHOX2a(2)                     --------->ANAC46                                                   ===============================HOX2a_HOX2a                                                   ==================================HOX2a_HOX2a                                                  ===================================HOX2a_HOX2a                                                  --------->PCF2                         <---------TGA2(1)                   --------->ARR14(2)             <------ZmHOX2a(2)                      --------->bZIP60(1)              --------->REM1(2)                   ================================HOX2a_HOX2a            ------->MYC2                         <---------ARR14(2)                      --------->TGA2(1)            ------->MYC3   <---------At4g35610   --------->ARR14(2)                      --------->bZIP60(2)            <-------MYC3   --------->At4g35610 --------->ABI4(2)                         --------->TGA1a            <-------MYC2   --------->TGA1a     <---------MYB46(3)                        --------->ANAC58  --------->WRKY38(1)  <-----------HVH21   <---------DEAR3(1)--------->AtMYB61          <-----------STF1 -->DOF2   <---------ANAC46==================bZIP_DOF--------->ANAC46                  ------>NtERF2 -------------------TaNAC69(2)    ---------->DOF2<---------PCF2                       --------->DEAR3(1) -------->REM1(2)  <---------ARR14(2)    <---------ALFIN1 --------->ANAC46        <---------At4g35610 --------ANAC46   <------ZmHOX2a(1)     --------->MYB46(3)<---------ALFIN1      --------->REM1(1)   - ------ANAC46--------->ALFIN1     ====================================bZIP_DOF------>ZmHOX2a(1) ----- ====================================bZIP_DOF --------->ALFIN1             ------>ZmHOX2a(1)    ----- ====================================bZIP_DOF--------->At5g28300     <---------ALFIN1 ----------->HVH21   cgcgtagaccagaacgtgtaggatttgtcacctcagaaaagaaccacggtggatcccaccacacctcagcctcactcctccttcatctccgacgtcatac  13985000                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                              ------>ZmHOX2a(2)  --------->MYB46(3)                                               --------->ANAC58           <------ -HVH21   *TSS                                                     --------->ANAC58          <------ZmHOX2a(2) -TGA1  <----------DOF2                                  <---------ARR11(3)                 --------- ==================bZIP_DOF                              --------->ARR11(3)                 <-------- -------->ANAC46                                        --------->GLK1(1)               <---------LBD16 ---->ANAC58                                            <---------GLK1(1)          --------->GLK1(1) ---->ANAC58            <---------GLK1(2)   --------->YAB1       ---------->DOF2  --------->ARR11(3)   ccaaaccactcttttctcacaattccgattttctcaaaaaccaaaatcacaatcgaagaaatcttttgaaagcaaaatggaagagatttcgacggatccg  13985100                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                                     <-------GAMYB                                                                                    <---------DEAR3(2)                                                                                   <---------DEAR3(1)                                                                                  <------NtERF2       <---------DEAR3(1)                                                        <---------DEAR4(2)      <---------At4g35610                <---------REM1(1)                       <---------RAP2.3(1) --------MYB46(3)                      <------MYB46(1)                          <---------RAP2.3(2) ------P----------->GT1                <------MYB83                             <---------DEAR3(1) ------MYB52(1)                      <---------MYB52(1)                        --------->ATERF1(1) ----GAMYB             --------->LBD16<---------MYB46(3)         ----------->TGA1------------>AtMYB77 ---->LBD16      ----------->HVH21  <---------At4g35610    --------->AtLEC2    --------->At4g35610 ---LBD16--------->At5g28300 --------->ARR11(3)            <---------YAB1      <---------At4g35610 >ARR14(2)     ----------->RAV1(2)  <-------GAMYB      <-----------TGA1     <------ZmHOX2a(1) -ARR14(2)----------->HVH21  <---------ARR11(3)       --------->YAB1--------->ETT(2)<---------MYB46(3)   gttgttccagcggtgaaacctgacccgagaacatcttcagttggtgaaggtgctaatcgtcatgaaaatgacgacggaggaagcggcggttctgagattg  13985200              ---------->DOF2        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------AGP1                                                 <---------ANAC58      --------->ARR14(2)                                             <---------ANAC46      <---------ARR11(3)                                          --------->ANAC58      --------->ARR11(3)                                          --------->ANAC58      --------->GLK1(2)                                   <----------DOF2      <---------ARR14(2)                                 <---------ANAC58     <---------CCA1(2)                                   <---------ANAC58     <---------ARR14(1)     ---------->ID1         <---------TOE2(3) <---------ANAC58    --------->LBD16     <----------DOF2           ---------->DOF2 --------->ANAC46                  -  <---------LBD16      <---------ANAC58         <---------YAB1  --------->MYB52(1)               <--- --------->MYB52(1)    <---------ANAC58     <---------GLK1(2)  ------>ZmHOX2a(1)         <----------DOF2   gagcaccggatctggataaagacttgctttgtccgatttgtatgcagattattaaagatgctttcctcacggcttgtggtcatagtttctgctatatgtg  13985300                                                                                         --------->DAG2                                                                 <----------DOF2         <---------TOE2(3)                                                          --------->YAB1           <---------------AGL15                                                          <---------ICU4      <---------ANAC58                                                 --------->AtMYB61            <---------ANAC58                                                --------->ANAC46 <---------DAG2    --------------->AGL15                           <---------WOX13(1)   --------->bZIP60(2)   --------->TOE2(3)  <---------TOE1(3)             <---------TOE1(2)       <---------REM1(1)   --------->ICU4     --------->ARR11(3) -------->YAB1           --------->ATHB12     <---------ALFIN1 --------->At4g35610<-----------------AGL1 ------CCA1(2) <------ZmHOX2a(1)  <-----------RAV1(1)    <---------ATHB12   <---------AHL20(2)  <----   tatcatcacacatcttaggaacaagagtgattgtccctgttgtagccaacacctcaccaataatcagctttaccctaatttcttgctcgataaggtttct  13985400                                                            <---------ANAC46                        <                                                            <---------ANAC58               <------MYB46(1)                                    <----------DOF2         <---------ANAC58               <------MYB83                          <------MYB46(1)               <-------GAMYB                     --------->MYB59            --------->YAB1<------MYB83                 --------->ALFIN1     <---------ANAC58        <        <-----------GT1  --------->MYB59               <-----------RAV1(1)  <---------ANAC58        < ------DOF2 --------->ANAC46   ------>ZmHOX2a(1)       <---------MYB46(3)   <---------ANAC46     <---   ttttctaattttactcgtaatttgtgtttggtccttagcttttcagttcaagttcgggtgttgcttgtttgagtcttagcttgtaatcaagtttggtttt  13985500  Previous    Next  AGI:  At2g32940.1    Description:  AGO6 (ARGONAUTE 6); nucleic acid binding. similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21030.1); similar to AGO4 (ARGONAUTE 4), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G27040.1); similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21150.1); similar to AGO4-2 [Nicotiana benthamiana] (GB:ABC61505.1); similar to putative ARGONAUTE9 protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84805.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67397.1); contains InterPro domain Argonaute and Dicer protein, Range:  from: 13979074    to: 13984553    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g32950.1    Description:  COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1). Identical to E3 ubiquitin-protein ligase COP1 (COP1) [Arabidopsis Thaliana] (GB:P43254;GB:O23974;GB:O23975;GB:O48770); similar to SPA4 (SPA1-RELATED 4), signal transducer [Arabidopsis thaliana] (TAIR:AT1G53090.2); similar to SPA4 (SPA1-RELATED 4), signal transducer [Arabidopsis thaliana] (TAIR:AT1G53090.1); similar to E3 ubiquitin-protein ligase COP1 (Constitutive photomorphogenesis protein 1) (GB:P93471); similar to COP1 homolog [Lycopersicon esculentum] (GB:AAC98912.1); similar to constitutively photomorphogenic 1 protein [Pisum sativum] (GB:CAB89693.1); contains InterPro domain WD40 repeat-like (Int Range:  from: 13985010    to: 13990612    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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