Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <----------DOF2                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                 <---------ARR14(3)                                 --------->ARR14(3)                                 <---------ARR11(3)                                 <---------ARR14(2)                                 --------->ARR11(3)                          <-----------GT1                      <---------ANAC55(1)                             <---------ARR11(3)                      <---------ANAC55(2)                             --------->ARR11(3)                      --------->ANAC55(2)                        ----------->RAV1(1)                      <---------ANAC58                        --------->ANAC58                      <---------ANAC46                        --------->ANAC58                      <---------ANAC58       <---------ATHB12 --------->ANAC46              <---------At4g35610--------->ARR14(2)          <---------HSFB2a(2)                   --           ---------->DOF2      --------->GLK1(1)            --------->HSFB2a(2) <-----------GT1  <--          <---------ATHB12      <---------GLK1(1)   <-----------GT1--------->MYB46(3)          ------   attcagtttcaaatgaagcagagtacgtgtttggagatctttctctaatcaatttcacaacttccagcaacaaatcttttttctcaccattctcttcatt  13908500                                                                         <---------ANAC46                                                                         <---------TGA1a                                                                         <---------ANAC58                                                                         <---------bZIP60(2)                                                                         <---------ANAC58                                                                         ================MYC_MYB                                                                         <---------O2                                             <---------ARR11(3)       ----------->TGA1                                             <---------ARR14(2)       ----------->HVH21                                             --------->ARR14(2)      <-----------HVH21                                             --------->ARR11(3)  --------->MYB52(1)                                            <------ZmHOX2a(1)    ------>MYB46(1)                                  --------->TOE1(3)             --------->MYB55(1)                                  --------->TOE2(3)            --------->MYB46(3)   --------->DAG2                 <---------DAG2               --------->AtMYB61-------->P ---------- ---------->DOF2   <---------ANAC58       <---------TOE2(3)    <---------MYB55(2)    <---------MYB52(1) ------->YAB1      <---------ANAC58  --------->MYB52(1)        <---------MYB46(2)   <-----------HVH21 -------YAB1   <---------WOX13(1) --------->AtMYB61         <-----------GT1 <-----------HVH21 --->ICU4    --------->ATHB12  <---------ALFIN1   <-----------GT1------>MYB83 <---------WRKY12   atcaaaagggagaagtgattggcatgagaaacaccaccttaactgaggatttttacattgaatcaccaaacggtgacgcgtcaacctgttatgccccata  13908600                             --------->ARR11(3)                                                 <----                             <---------ARR11(3)                                               <------                           ------>MYB83                                                     <--------                           ------>MYB46(1)         <---------ALFIN1                    --------->GLK1(2)                        --------->MYB46(3)  ---------->DOF2                       --------->YAB1-----                   <------NtERF2          <---------YAB1                       --------->HSFB2a(2) ->RAV1(1)   <-----------RAV1(2)        --------->YAB1       ---------->DOF2   <---------HSFB2a(2) <-   acatgactctgagcctcagtcggcaaaccaacatctccacaaacataatagccacattccaaacaaagccaaatagcatttctagcacaattctggtcag  13908700                                                    ------->MYC3                                                    <-------MYC3                                                   ====================bZIP_DOF                                                   --------->ANAC55(2)                                                   <---------ANAC55(2)                                                   --------->ANAC46                              <---------ALFIN1     <---------ANAC46                             --------->ANAC46      --------->O2 -----At4g35610              --------->ANAC58      <---------TGA1a ---WRKY12                   --------->ANAC58      --------->TGA1a                    <---------MYB46(3) ---HVH21                  <---------ALFIN1        <---------O2--------->ATHB12   --------->ATHB12 ---->At4g35610   ------>ZmHOX2a(1)             <---------REM1(2)            <---------ALFIN1    ---- -----ZmHOX2a(1)----------->RAV1(2)        ------>ZmHOX2a(1)<----------DOF2<---------ALFIN1   -------   aggaagaataccagtctctcctgttactagcaccccatctacttcctctcttcacgtgaactctttcattgcattctccacacttgatttgttgataaga  13908800                                                        <----------DOF2                                                       =====================================HOX2a_HOX2a                                                       ------>ZmHOX2a(2)                                                      <---------RVE1(1)                                                      <------ZmHOX2a(2)                                                     <---------ARR11(3)                                                     --------->ARR11(3)                                                     --------->ARR14(3)                           ---                                                     <---------ARR14(3)                           ---                                                     --------->ARR14(2)              ------>ZmHOX2a(1)                                      --------->YAB1 <---------ARR14(2)     <---------At4g35610   --- ----->CCA1(2)           <---------ATHB12            <---------AGP1         --------->At4g35610 <---- ---->ARR10 --------->MYB46(3)<---------ARR11(3)     --------->AGP1   <-----------HVH21  <---------MYB52(1)   tttgataattttcaacaacttatccaaatcaacatatttatcaaaatggacacaagatcttttttctgtcattgtcacagcaaactcctcagttacttcc  13908900                           <-------GAMYB                                                        <----                  <---------HSFB2a(2)                                                           -----           <---------WOX13(1)               <---------ARR14(2)                                ------- <----------DOF2  <---------LBD16           --------->ARR14(2)                                ------- ------>ANAC58    --------->HSFB2a(2)  --------->TOE2(3)          --------->TOE2(3)          -------- ------>ANAC46 <----------DOF2    <---------MYB52(2)              <----------DOF2            <------- ------>ANAC58<---------ANAC58   <---------At4g35610      <-----------GT1             <---------MYB52(1) -----ALFIN1  <---------ANAC58   --------->At4g35610  <----------DOF2      <----------DOF2 <---------ICU4   acgctttgctcagattgcttctcggagaccgttgcagcaaacctcatatatggaggcttttgacccttctttaatctctttcccattcgttactaattat  13909000     <---------MYB59     <---------MYB46(2)    --------->ANAC46   <---------------------WRI1  <-----------GT1                                                            <---------KAN4(2) -----YAB1      --------->ANAC58                                     <-------TEIL ------>TBP     --------->ANAC46                                  <---------At4g35610      --------->ZAT2 -->AHL20(2)    --------->ANAC58                            --------->ARR11(3)             <---------ZAT2 -->YAB1      ---------->DOF2         ---------->DOF2       <---------ARR11(3) --------->YAB1 ->ICU4------>MYB46(1)             <---------ANAC46     ---------->DOF2    --------->LBD16 --------->At4g35610 --YAB1------>MYB83     ---------->DOF2         <---------YAB1    --------->At4g35610      <---------At4g35610   aaatataccaaactttcaaagccagacaaaggagactgcgtaaagacaccattatacagaaagatgttagcttcatccgaataatcaaatcacagcttag  13909100                                                                                               ------                                                                                        <----------DOF2                                              <---------ATHB12                      <---------ARR14(2)      --------->YAB1                        --------->WOX13(1)                      <---------GLK1(2)      <---------ICU4--------->ANAC58      ------------>CBF                          --------->ARR14(2)     <---------AHL20(2)    --------->MYB52(1)--------->ANAC58            <---------MYB52(2)  <-------     <---------ATHB51    <---------MYB52(2)--------->MYB46(3)  --------->YAB1      <------ZmHOX2a(1)  --------->AHL20(2)--------->ANAC46  ----------->GT1       --------->YAB1       --------->LBD16  <-- <---------AHL20(2) --------->ANAC58 <------ZmHOX2a(1)   --------->TOE2(3)      <---------LBD16<----- --------->AHL20(2)<---------------------WRI1--------->ANAC58<---------TOE2(3)  <-----------RAV1(2)   caaataaataatgaagcattagacgaaacaaacagagaaggagtaacaatcaacttgtacattaatgaaaatcaaacaaaccccaggattcttttagcac  13909200                                                                    --------->LBD16                                                                --------->GLK1(2)                                                         ----------->RAV1(1)                                                         ------>MYB46(1)                                                         ------>MYB83                           <---------MYB59             --------->MYB46(3)             <---------ARR14(3)           --------->HSFB2a(1)  <---------------AGL15  <---------MYB59                --------->GLK1(2)        ---------->DOF2    --------->TOE1(3)           <---------MYB55(2)             <---------ARR11(3) <------------CBF          --------->TOE2(3)          --------->ANAC46                --------->ARR11(3) --->ZAT18 <---------HSFB2a(1)------------>CBF        --------->ANAC58         ----------->GT1 <----- --At4g35610        <---------DAG2                    --------->ANAC58     ---------->DOF2<<<<<<<<<<< -------ALFIN1      <----------DOF2                  -------->P <---------ARR14(2)    --------->ARR14(2) ----ZAT18--------->DAG2<-----------GT1    ----------->GT1      --------->ARR14(2)    --------->ARR14(3)   acacattgcaaaaaggttccaactttttaccttacaatacttagtatgtaaaaactacccaacaaaaatccgaaattcaaagagtcaaaatcttccagtg  13909300                                                           --------->ANAC46                                                           --------->ANAC58                                                           --------->ANAC58                                                     --------->TOE2(3)                                                     --------->TOE1(3)          --------->AHL20(2)                        <---------YAB1        --------->At4g35610               <---------AHL20(2)---                       --------->AHL20(2)   <---------WRKY45               <----------DOF2       ---- ----AtMYB61--------->DAG2                  <---------WRKY38(1)        <---------GLK1(2)   ---------- <<<<<<LFY ---------->DOF2 <-----------GT1  <---------WRKY12      --------->MYB52(1)  ---------->DOF2   gtctaaacaactaaaaagttgggatttttatactaaatactagtagtcaactaaaccttaaacgcaaaaaacagatgcttttttaaataaaagttgtaaa  13909400  Previous    Next  AGI:  At2g32780.1    Description:  ubiquitin-specific protease 1, putative (UBP1). Identical to Ubiquitin carboxyl-terminal hydrolase 1 (UBP1) [Arabidopsis Thaliana] (GB:Q9FPT5;GB:O48839); similar to UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT1G04860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67276.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 13905508    to: 13908947    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version