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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                    --------->AtMYB61
         <---------ALFIN1           <---------ALFIN1
         --------->AtMYB61         --------->MYB46(3)
      <---------ALFIN1           --------->AtMYB61
   --------->ARR14(2)            --------->DEAR3(1)
   <---------ARR14(2)           --------->MYB46(3)
<---------MYB55(2)            --------->DEAR3(1)                               <---------HSFB2a(2)
--------->MYB46(3)            --------->AtMYB61                                ------>ZmHOX2a(1)
-------->ANAC46            --------->DEAR3(1)                               ------>NtERF2
-------->ANAC58            <---------ALFIN1<---------HSFB2a(2)           ------>NtERF2
----->MYB46(1)             --------->AtMYB61                            ------->GAMYB
----->MYB83               --------->MYB46(3)                     --------->MYB46(3)
-------->ANAC58         --------->AtMYB61  ------>ZmHOX2a(1)   --------->ARR14(2)                  <
------>DEAR3(1)        --------->MYB46(3)  --------->HSFB2a(2) <---------ALFIN1--------->HSFB2a(2) -
------>AtMYB61     ------>ZmHOX2a(1)--------->DEAR3(1)    ------>ZmHOX2a(1)--------->DEAR3(1) ------
-------ALFIN1------>ZmHOX2a(1)<---------ALFIN1         ------>ZmHOX2a(1)--------->DEAR3(1) ------>ZmHOX2a(1)
----->MYB46(3)  ------>ZmHOX2a(1)<---------ALFIN1     <---------ALFIN1<---------ATERF1(1) <---------ALFIN1
----ALFIN1  <---------ALFIN1 --------->MYB46(3)    <---------ALFIN1--------->At4g35610 <---------ALFIN1
 
ccacccaatccacctcctcctcctaaaccaccaccaccaccacctcctagaccccctcctcctcccaaaccgctaccgcctcctagaccccctcctcctc  13871300
                               <------NtERF2
                              ------>NtERF2
                             --------->DREB2C(2)
                             --------->RAP2.3(2)
                             --------->RRTF1(2)
                             --------->RAP2.6(2)
                             --------->RRTF1(3)
                             --------->ATERF1(2)
                             --------->RAP2.3(3)
                             <---------ATERF1(2)
                            --------->ORA47(2)
                            --------->RAP2.3(1)
                            --------->RRTF1(1)
                            --------->DEAR4(2)
                            --------->ERF1                                       --------->ABI4(1)
                            --------->ATERF1(1)                              --------->AtMYB61
                           --------->ABI4(1)                                 <---------ALFIN1
                           ------>NtERF2                                     --------->DEAR3(1)
                           <---------ATERF1(1)                              <---------ABI4(2)      -
                          --------->ANAC46                             --------->ANAC46     --------
                          <---------ALFIN1                             --------->ANAC58<---------HSFB2a(2)
                          --------->DEAR3(1)                           --------->ANAC58------>ZmHOX2a(1)
                          --------->AtMYB61                    <---------ATERF1(1)  ------>NtERF2  -
                        --------->ABI4(1)                      ------>NtERF2<---------MYB55(2)     -
                       --------->DEAR3(1)       ------>NtERF2  --------->ABI4(1) <---------ATERF1(1)
               ------>ZmHOX2a(1)               --------->DREB2C(2)   ------>ZmHOX2a(1) --------->HSFB2a(2)
               <---------HSFB2a(2)             --------->DEAR3(1) ------>NtERF2 ------->GAMYB      <
            ------>NtERF2 --------->DREB2C(2) --------->DEAR4(2) --------->DEAR3(1)--------->DEAR3(1)
           <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ABI4(1)------->GAMYB------>NtERF2    <-------
         ------>NtERF2 <---------ALFIN1     --------->DEAR3(1)--------->DREB2C(2)------>NtERF2     -
        ------->GAMYB  --------->AtMYB61    <---------ALFIN1  --------->DEAR3(1)--------->DEAR3(1)--
        --------->DEAR3(1)------->GAMYB     --------->AtMYB61 <---------ALFIN1--------->ABI4(1)-----
      <---------ATERF1(1)--------->MYB46(3)<---------MYB55(2)--------->ORA47(2) <---------ALFIN1  <-
   --------->At4g35610--------->MYB46(3)   --------->MYB46(3)--------->MYB46(3) --------->DREB2C(2)<
 --------->MYB46(3)   <---------MYB55(2) <---------ALFIN1  <---------ALFIN1<---------ATERF1(1) -----
---------ALFIN1--------->HSFB2a(2)       --------->ANAC46  --------->AtMYB61--------->MYB46(3) <----
-------->ARR14(2)   --------->AtMYB61 --------->AtMYB61 --------->AtMYB61 --------->RAP2.6(2) ------
>ZmHOX2a(1)--------->DEAR3(1)--------->DEAR3(1)------->GAMYB<---------ATERF1(1)--------->DEAR4(2) --
 
ccaaaccgctaccgcctcctagaccaccaccgccgcctaaacctccaccaccgcctaaacctccaccgcctcctaggccaccaccgcctcctagaccacc  13871400
       <---------WRKY18(1)
   <------NtERF2
  ------>NtERF2
 --------->RAP2.3(3)
 --------->RRTF1(2)
 --------->DREB2C(2)
 --------->RAP2.3(2)
 --------->ATERF1(2)
 --------->RRTF1(3)
 --------->DEAR3(1)
 <---------ATERF1(2)
 --------->RAP2.6(2)
--------->RAP2.6(1)
--------->RRTF1(1)
--------->DEAR4(2)       <---------ALFIN1
--------->RAP2.3(1) ------>NtERF2
--------->ERF1      --------->ORA47(1)
--------->ORA47(2)  --------->ABI4(1)
--------->ATERF1(1)--------->DREB2C(2)
-------->LBD16     --------->DEAR3(1)
->AtMYB61          ------->GAMYB
----->NtERF2      --------->ORA47(2)
-------->At4g35610--------->ANAC46
---------At4g35610--------->DEAR3(2)
--ALFIN1         <---------ATERF1(1)
-------->ABI4(1)--------->AtMYB61
------->DEAR3(1)<---------ALFIN1
---->DEAR3(1)  --------->MYB46(3)
--------ALFIN1<---------ATERF1(1)                          <---------ANAC58
---------ATERF1(1)--------->MYB46(3)                       <---------ANAC58
---->AtMYB61 --------->DEAR3(1)             <---------ANAC58                        ----------->GT1
-----ALFIN1<---------ATERF1(1)              <---------ANAC46               <---------TOE1(1)    <---
--->ZAT2  --------->RAP2.6(2)               <---------ANAC58        <------ZmHOX2a(1)    --------->ICU4
------->ANAC46------>NtERF2              <----------DOF2 <---------YAB1    <---------TOE2(1)    <---
 
tccgccgcctagaccgcctccaccgcccaaacccttaccgaaacctttcttgtaaatgccatgcttgtggaggaatggacgaggtttgtgtaaaaatgga  13871500
                                                                                                 ---
                                                                                                ----
                                                                                                ----
                                                                                                <---
                                                                                                ----
                                                                                               -----
                                                                                               <----
                                                                                             ------>MYB83
                                                                                             ------>MYB46(1)
                                                                                      --------->ANAC58
                                              --------->ANAC58                        --------->ANAC46
                               --------->TOE2(3)                                      --------->ANAC58
                               --------->TOE1(3)                                      <---------ALFIN1
                            <---------DOF5.7(2)                               --------->CCA1(2)<----
           --------->DAG2 <---------MYB52(1)  --------->ANAC58           ---------->DOF2     -------
          ---------->DOF2 --------->DOF5.7(2)--------->SPL7          <---------ARR14(2) <---------ALFIN1
------TOE1(1)          <------NtERF2  <---------GLK1(1)              --------->ARR14(2) --------->ANAC46
------TOE2(1)       ---------->ID1  <---------ICU4      <---------At4g35610 --------->YAB1 ---------
 
cgaggtttgtggaaaaagtgtttgtcgtcgttaacctcaacatttccgaacgaaaattcagcgactagagcgaatacaaagataaacacacacaccttcc  13871600
                        --------->MYB52(2)
------>LBD16<---------ICU4
----->LBD16 --------->ATHB51
----->HSFB2a(2) <-----------GT1
------HSFB2a(2) --------->MYB52(1)
----->ANAC46<--------HAHB4
---->HSFB2a(2) --------->AHL20(2)
-----LBD16 <---------ATHB12                 ---------->DOF2                                      <--
-----HSFB2a(2) <---------AHL20(2)      <---------ARR14(2)                                      -----
->P--------->AHL20(2)  <-------TEIL <---------ANAC46 <------ZmHOX2a(2)<-----------HVH21        <----
>AtMYB61   --------->ICU4         ----------->GT1    *TSS       <---------MYB46(3)       <---------WRKY18(1)
 
cggaaattaaacccataattaactggttcgttttatatggtgtatatgaaagagagatcgaagacagtagttgtgtcagtgaagcttagtcttgacctct  13871700
                          --------->ANAC55(2)
                          --------->ANAC58  <---------ARR14(2)
                  =================================================bZIP_DOF
                  <---------O2        --------->MYB52(1)
                  --------->O2        --------->ARR14(2)
              <---------ALFIN1        <---------ARR14(2)
             --------->ZAT18       --------->YAB1
        --------->ARR14(2)--------->ANAC58  --------->ARR14(2)
        <---------ARR14(2)<---------ANAC55(2)    <---------ANAC58    <---------ANAC58              -
---------TBP <---------ZAT18       --------->ANAC46            <---------TOE1(2) --------->LBD16<---
---------->AGL15  --------->TGA1a  --------->ANAC55(2)  <----------DOF2        <---------LBD16 -----
-----------AGL15  <---------TGA1a <-------TEIL   <---------ANAC58    <---------ANAC58          <----
 
atatatagacatatcgtccactcgtgagtacgttacatacataaccggttttgcttcttctttttctaggtttcttatcaattccggtttagtttagttt  13871800
                                                            --------->ARR14(2)
                                                            --------->MYB52(1)
                                                            <---------ARR14(2)
                                                           ----------->HVH21
                                                         <---------ANAC58         <---------LBD16
                                                         <---------ANAC55(2)    <---------ARR14(2)
                                                 <------MYB83           --------->DAG2
                                                 <------MYB46(1)       ---------->DOF2    --------->ATHB12
-------->ATHB12                               <---------ANAC58       <------ZmHOX2a(1)   --------->ICU4
----GAMYB            --------->AHL20(2)       <---------ANAC58   <---------MYB52(1) --------->LBD16
---->MYB52(2)        <---------ATHB51        --------->ATHB12  ------->GAMYB    --------->ARR14(2) -
-----MYB46(3)  --------->ANAC46     <---------MYB46(3)   <---------ANAC58  --------->ALFIN1    <----
 
gttgatttgttcatatatactcaaattattctatttcagaggttgaaatgcttggttaaggcgtaaccgtgaggaaaagtgggaaaccggaattgattaa  13871900
                                             --------->ZAT18
                                          <---------ANAC46                          <---------AHL20(2)
                                      <---------ANAC58                              --------->AHL20(2)
                                <---------AHL20(2)                    <-----------HVH21
                                --------->AHL20(2)                 --------->At4g35610             -
                                <---------AHL20(1)                 ----------->RAV1(2)             <
                                --------->AHL20(1)                 <---------At4g35610             -
                               --------->AHL20(2)               <-------TEIL       <---------AHL20(1)
        <---------AHL20(2)     <---------AHL20(2)     <---------AHL20(2)           --------->AHL20(1)
        <-----------GT1    --------->AHL20(2)<---------ZAT14<---------TOE2(3)      --------->AHL20(2)
-------->LBD16        ----------->GT1 <---------ANAC58--------->AHL20(2)           <---------AHL20(2)
-------GT1            <----------ID1 <---------MYB46(3)<---------AHL20(2)    <------ZmHOX2a(1)     <
 
accggacgtattaacttgtaagaaggcgaaaaaaataaattggttgagtaaactaaattaaatgaggttcacctgtcataggacaatttatttatgtctg  13872000
           <---------ARR11(3)
           --------->ARR11(3)
     <-----------RAV1(2)
     ===========================RAV                                       --------->YAB1
 ------->GAMYB                                                            --------->AHL20(2)
<---------MYB55(2)                                                       <---------AHL20(2)
--------->MYB46(3)              <---------AHL20(2)                    --------->AHL20(2)           -
<------------AtMYB77           --------->AHL20(2)                    <---------AHL20(2)            <
-------->At4g35610    --------->YAB1                                 --------->AHL20(2)   <---------AHL20(2)
---------ZAT2       ----------->RAV1(1)         <-------TEIL      --------->AHL20(2)    --------->AHL20(2)
-------->ZAT2------>ZmHOX2a(2) --------->YAB1   ------->TEIL     <---------ATHB12       <---------AHL20(2)
---------At4g35610--------->MYB46(3)     <---------ATHB12        --------->AHL20(2)  ------->TEIL---
 
ccaactgcccagttgatctcatccaacataacaataaaaatgaaatcaatgtacatttgatgaattcaataaataaataatatcgatgtatatatatatg  13872100
                                                                   ----------->GT1
                                                            --------->ATERF1(1)
                                                            <------NtERF2
                                                            --------->RAP2.3(1)
                                                           <---------ATERF1(1)
                                                           ------>NtERF2
                                                          <---------DEAR3(1)
                                                         <---------ABI4(2)
                                                         <---------PCF2
                                                         --------->ATERF1(1)
                                                         --------->ZAT18
                        ----------------->AGL1          <---------ATERF1(1)
                      <-----------GT1                  <---------ZAT18                             <
               --------->ARR11(3)                      <---------RAP2.3(3)  --------->TOE2(3)      -
               <---------ARR11(3)                      <---------DEAR3(1)   --------->TOE1(3)-------
------>MYC3   <---------CCA1(2)            --------->MYB52(1)--------->DEAR3(1)              <------
-------MYC3  ------->TEIL               --------->At4g35610<---------RAP2.3(1)               -------
---->TEIL ----------->GT1      <---------TOE2(3)--------->GLK1(2)----------->GT1            --------
 
cacatgaaatgaaatgtatatcttatttccgattaagaaaatgagcaaacgattctagtgggcgccgatggtgaaaaaacctgaaattgatgaaaatata  13872200
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AGI:  At2g32690.1   
Description:  pseudogene, glycine-rich protein
Range:  from: 13870801    to: 13871654    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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