Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <-------GAMYB                                       --------->MYB52(2)                                       --------->ALFIN1                                       <-----------RAV1(1)        ----------->GT1              <---------ANAC46        <------MYB83               <---------ANAC58        <------MYB46(1)            <---------ANAC46                                               <--    ------->MYC2                   <---------ANAC58                                            <-----    <-------MYC2               <---------MYB52(1)                                             <------    <-------MYC3              <-------GAMYB         <---------AHL20(2)                        -------    ------->MYC3             <------MYB83          --------->AHL20(2)                    ------>NtERF2  ------->TEIL               <------MYB46(1)       <---------AHL20(2)                  <---------ANAC46 ------->ANAC58             --------->MYB59       <---------WOX13(1)                   <---------RAP2.6(2) ------->AtLEC2           <---------MYB52(1)    --------->ATHB12                       <---------ANAC58 ------->ANAC58           --------->ARR14(2)   --------->ICU4                          <---------ANAC58 -GT1<---------MYB52(1)   <---------ARR14(2)<---------AtLEC2   <----------DOF2   <---------RAP2.6(3)   catgcacgtttggttaactatcaaaccggttcggttatcgtgtgttgcattgattaatttgttttctttcattttttgaatgcagtcttgcggccatgtg  13685600                                                                              -------->HAHB4                                                                              --------->ATHB12                                                                   <---------DAG2               --------->ANAC58                                   <---------ANAC58            ----------->HVH21                                     <---------ANAC58           <---------HSFB2a(2)                         <----------DOF2       <---------YAB1 -------MYB46(3)                                    --------->ARR11(3)       --------->ICU4 ------RAV1(1) --------->ANAC58                     <---------ARR11(3)  <---------MYB59 -MYC3     ------>ZmHOX2a(1)                   <---------YAB1   <-----------GT1 >MYC3 <---------ZAT18                ----------->GT1<---------YAB1<----------DOF2   ttgttgttgtgtcctcgacgcatgcttctgaagacttagatggtttattttgattatctttgtattttgctttaccaaaatgattcgactaggtttatga  13685700                                                                          --------->AHL20(1)                                                                          <---------AHL20(1)                                                                          --------->ARR11(3)                                               <---------AtLEC2           <---------AHL20(2)     ----  <------MYB83                        <----------DOF2      <---------AHL20(2)     --------->MYB52(2)  <------MYB46(1)    <---------AHL20(2)   <----------DOF2 --------->AHL20(2)     <---------TOE1(2) <---------------AtSPL3             <---------DAG2        <---------AHL20(2)    <---------MYB52(1) --------------->AtSPL8          <-----------GT1    ----------->GT1 --------->TOE2(3)            <---   catttggtacttctatttgttaattcatttctatatcactctttcttttgcattgtgtaattttataaattcttaatatatcgtttgttttctcttagac  13685800                                                                                    --------->ANAC58                                                   <-------MYC3                     --------->ANAC58                                                <---------DOF5.7(2)                 --------->ANAC46                   <-----------GT1        <--------P                       --------->ZAT6                  <-------TEIL            <---------MYB52(1)             <-----------GT1          --------->ANAC46               <---------MYB52(1)          --------->AHL20(2)          --------->ANAC58     <----------DOF2 <---------WRKY45      <---------AHL20(2)          --------->ANAC58     <---------DAG2  <---------WRKY38(1)  --------->AHL20(2)     --------->ANAC46       <-----------GT1    <---------WRKY12     <---------AHL20(2) ----->ARR11(3) <---------GLK1(2)    --------->MYB52(1)             <---------AHL20(1)            --- ------ARR11(3) --------->ARR14(2)  <-----------GT1------->MYC3     --------->AHL20(1)  ---------->DOF2   atcttctaaaccacgctagattcacatttttgactttattaccggttagtcaacgtggacttaaaatcaatttaataacactatataagccaaagttata  13685900                                                                                           ------>NtERF2                                                       --------->ARR11(3)                 --------->DEAR3(1)                                                       <---------ARR11(3)                <------NtERF2                                                      --------->RVE1(1)                --------->DEAR3(1)                                                      --------->CCA1(1)               <---------ABI4(2)                                                  ----------->TBP                     --------->ATERF1(1)                                                  --------->AHL20(2)                 <---------ATERF1(1)                                              <---------ANAC46                     ---------->DOF2                              <---------ICU4  <---------ANAC55(2)                --------->ANAC46                              --------->YAB1  <---------ANAC58    --------->DAG2 --------->ANAC58   --------->AHL20(2)        --------->ICU4   ----------->GT1--------->LBD16   --------->TOE1(2)-----   --------->YAB1<--------P  <---------ATHB12 <---------ANAC58   ---------->DOF2 --------->ANAC58 --------->CBF  <-------GAMYB<---------ATHB51<-------TEIL  <---------LBD16  --------->GLK1(2)   *TSS   aacaattaaaactcttggggttagaatgcaaataatgaacaaatcgatgcgtataaatatctcccgataaagccctagaatccaaggaagcgccgagaga  13686000                                                       <----------DOF2                                                       ------>ZmHOX2a(1)                                                     ==================HOX2a_HOX2a          ------>ZmHOX2a(2)                                                   <---------ARR11(3)                   ----------->HVH21                                                 ----------->HVH21                   <---------DEAR3(1)                                                --------->LBD16                      <---------DREB2C(2)                                               <---------ANAC58                 ---------->DOF2                                               <---------ANAC58             --------->At5g28300  <---                                           --------->DAG2           <---------ARR14(2) <------NtERF2                                          ---------->DOF2           --------->ARR14(2) --------->At5g28300                    ----------->GT1     <------ZmHOX2a(1)       <------ZmHOX2a(1) --------->DAG2 ----                    --------->YAB1      ====================HOX2a_HOX2a    --------->LBD16  =========             ----------->HVH21        --------->LBD16------>ZmHOX2a(2)     ----------->GT1  --------- ----->DOF2----------->GT1           <-----------RAV1(2)        ===================================HOX2a_HOX2a   aagacagagaagagagtgacaatggtgaaatgtatgaagccaggaaaagccgtgatccttttacaaggacgatacaccggtaaaaaggcggtgatcgtga  13686100                                               <---------ATERF1(1)                                               ------>NtERF2                                              <---------DEAR3(1)                                              --------->DEAR3(1)                                            <-----------HVH21                 <-------GAMYB             =======================================bZIP_DOF            <---------SPL7                 --------->O2           <---------DEAR3(2)              <---------O2                                       -------       ----------->HVH21                   --------->TGA1a                             --------->ARR14(2)  ------>ZmHOX2a(1)         <---------SPL7 <---------TGA1a                             --------->ARR11(1) --------->TOE2(2)        <---------------AtSPL8--------->ATERF1(1)    ---------->DOF2 <---------ARR14(2) --------->TOE1(2)<---------MYB52(1)   <-----------HVH21            --------->ANAC46   <---------GLK1(2) ------GLK1(1)   ====================================MYC_MYB        --------->ANAC58--------->ANAC58 ----->GLK1(1)  <---------ANAC46 <-----------HVH21--------->LBD16   --------->ANAC58--------->ANAC58 ========HOX2a_HOX2a      --------------->AtSPL3<---------LBD16 --------->ANAC58--------->ANAC58 -->GT1----------->TGA1   <---------------AtSPL3<------NtERF2   --------->ANAC58--------->ANAC58   aatccttcgatgacggtaccgttgagaagaagtacggtcactgtctcgtcgccggattgaagaagtacccaagcaaagtcattcgcaaggattcggcaaa  13686200                                                        ----------->HVH21                                                       <-------PIF5                                                       <-------MYC4                                                       ------->PIF5                                                       ------->MYC4                                                       ------->MYC3                                                       ------->PIF4                                                       <-------MYC3                                                       <-------MYC2--------->ANAC58                                                       <-------PIF4--------->ANAC58                                                      --------->TGA1a                                                      <---------ANAC55(2)                                                      --------->ANAC58                                                      <---------TGA1a   <---------ALFIN1------>ZmHOX2a(2)                  <---------ANAC46                    --------->ANAC55(2)              <---------At4g35610                  <XXXXXXXXXXXXXXXXXXXXMIR164C        --------->ANAC58 <---------ZAT14 --------->At4g35610                <---------ANAC46                    <------------OsbHLH66      --------->ATHB12  <---------RAP2.6(2)                               <---------ALFIN1   --------->ZAT14<---------AGP1 --------->RAP2.6(3)                       --------->WOX13(1)   <---------REM1(2)     --------->ARR14(2) --->DOF2      <---------LBD16       <---------ARR11(3)------->MYC2--------->ANAC46   <---------ARR14(2)   gaagacggctaagaaatcgcgcgtgaaatgcttcttcaaggtcatcaattaccagcacgtgatgcctacgcgctacactcttgatttggatctgaagaac  13686300                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               --------->ARR11(3)               <---------ARR11(3)            ------>NtERF2           --------->ANAC46          <------NtERF2         ------>NtERF2         <---------ATERF1(1)        --------->DEAR4(1)        ----------->HVH21        --------->DREB2C(2)        --------->At1g77200        --------->RAP2.3(3)        --------->DEAR3(1)       --------->ERF1                              <------ZmHOX2a(1)       --------->ATERF1(1)                       <---------TOE1(3)       --------->RAP2.3(1)               <<<<<<<<<AtERF-4       --------->DEAR3(2)                <<<<<<<<<AtERF-3       --------->ORA47(2)                ------>NtERF2      --------->LBD16                   <---------RAP2.3(3)      ------>NtERF2                     <---------RAP2.3(2)      --------->At4g35610               <---------RAP2.6(2)      <---------At4g35610               <---------DEAR3(1)      <---------ATERF1(1)              --------->RAP2.6(3)     --------->DEAR3(1)               --------->MYB52(1)                                            -     --------->ANAC46                ----------->HVH21                                              <    --------->ATERF1(1)          ---------->DOF2 <---------TOE2(3)                         --------->ANAC58    <---------LBD16        --------->YAB1<---------RAP2.3(1)                               --------->ANAC58   gttgtctccgccgacgcgatctcgtccaaggataagaaagtgacggctcttaaggaagcgaaggcgaagtttgaagagaggtttaagactggcaagaaca  13686400                 <---------TOE2(2)                 <---------TOE1(3)                 <---------TOE2(3)                 <---------TOE1(2)             --------->ZAT2             <---------ZAT2                          <---------TOE2(3)            ------>MYB46(1)                          <---------TOE1(3)                             --            ------>MYB83                            ---------->DOF2                                <- -------->HSFC1(2)                     --------->AHL20(2)                               <---------ANAC58 ---------HSFC1(2)                     <---------AHL20(2)              -------->P       <---------ANAC58   gatggttcttcaccaagcttaggttttgaattctacagtttttaattttagttttaaagtttcaatttttatctaccatgaattgtttttgcttctggtt  13686500  Previous    Next  AGI:  At2g32210.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32190.1); similar to unknown [Populus trichocarpa] (GB:ABK92801.1); contains domain PD188784 (PD188784) Range:  from: 13685063    to: 13685907    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g32220.1    Description:  60S ribosomal protein L27 (RPL27A). Identical to 60S ribosomal protein L27-1 (RPL27A) [Arabidopsis Thaliana] (GB:Q9SKX8); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to unknown [Populus trichocarpa] (GB:ABK93821.1); similar to ribosomal protein L27 homolog (GB:AAA86950.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) Range:  from: 13685996    to: 13686600    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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