Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <XXXXXXXXXXXXXXXXXXXXMIR860                                                                         ------->MYC3                                                              ------------>MYB.PH3(1)                                                        --------->At4g35610  ------->TEIL          ---------->DOF2                        --------->YAB1  ----------->GT1 ----------->GT1 <XXX  <-----------HVH21                           --------->YAB1  ------------>AtMYB77        <---------YAB1 <---------MYB46(3)                ----------->GT1   ---------->DOF2     <-------MYC3   --------->ZAT6   tggtggtcagagaaaagaccgctcttccaagaacaaggagtgaaacaaaaatcatataagcagagaacagttacacatgtatatagtttaatactattga  13607200                                                                   <---------ARR14(2)                                                                   <---------GLK1(2)                                                                   --------->ARR14(2)         <------                                                                 --------->LBD16              <------                                                                <---------ANAC55(2)      <---------At4g35610            <----------DOF2                                     <---------ANAC46       <---------RAP2.6(2)    --------->YAB1                                              --------->ANAC55(2)   --------->SPL7    <---------ICU4                                       <---------ANAC46            <---------MYB52(1)   <---------ATHB51                                    <---------ANAC46              --------->ARR14(2)   --------->ICU4  <---------TOE1(2)               <------ZmHOX2a(1)   <---------YAB1<---------ARR14(2) XXXXXXXXXXXXXXXXXMIR864-5P  ---------->DOF2  <----------DOF2  <---------LBD16  <-----------GT1   agacaattatgcctcttttactacgttcttacaaagtaatctatggttctttaggagttgtgtattccggattttgattttgtttcggttcggcttactt  13607300                    ===========================HOX2a_HOX2a                    <------ZmHOX2a(1)                  <---------TOE1(3)        <---------MYB52(1)      <---------ARR11(3)                ------>ZmHOX2a(2)                <---------MYB46(3)      --------->ARR11(3)              <---------AGP1              <---------WOX13(1)          -------     <---------CCA1(2)                <---------ARR14(2)        --------->ATHB12             -------- ---ANAC58        <---------TOE2(3)   --------->ARR14(2)       <---------YAB1            <---------AHL20(2) ---ANAC58    <----------DOF2    <---------ZAT6             <----------DOF2             --------->AHL20(2)   ggttcttaaatcttcggtttaaggaaatagcgatagtgtagatcggtttggcaaggttttgacttttgattgcattggttctattttgtattaaataaaa  13607400                                                 --------->ANAC58                                                 --------->ANAC58                                  --                                                --------->ZAT18                               <------                                            --------------->AtSPL8                            -------                                            <---------------AtSPL8                            <------                                            <---------------AtSPL3                            <------                                        --------->AHL20(2)          ---------->DOF2        --------->LBD16                                        <---------AHL20(1)      <---------------AGL15   --------->MYB52(1)                                        --------->AHL20(1)      --------------->AGL15 --------->ANAC46                                      <---------ARR11(3)        ------->GAMYB      <---------ARR14(2)       --------->LBD16                --------->AHL20(1)       <-----------------AG--------->ARR14(2) --->DOF2                             <---------AHL20(1)      -------->P     --------->GLK1(2)------- ->AHL20(2)                  --------->ARR14(2) <---------ZAT18<-----------------AGL1 ----------->HVH21   gataagtccctgaaattgtagttgttttcaaaatactcaaaatattttagtacgcttctaatctaaccccaaaaggaagaaactgtatacgaccggaggt  13607500 ---------->CBF ---HSFB2a(1) -->HSFB2a(1)       ------------>CBF    <-----------GT1               <----------DOF2            >>>> ---HSFC1(2) <---------ALFIN1   <---------YAB1                      *TSS              <---------ARR14(2) ---MYB46(3)--------->ZAT14  --------->GLK1(2)                   ---------->ID1       --------->ARR14(2) -->HSFC1(2)<---------ZAT14 <---------GLK1(2)            ------------>CBF <-----------GT1     <<<<<<<   tctcaatcgaatactacaccggttcaattcgattctgtttataaaccggtctctcgcgattcaattcgtcttctttttccaatttccagttccttcttct  13607600                         --------->LBD16                        --------->ANAC58                                                    ---------                        --------->ANAC58                                                   --------->At4g35610                        --------->ANAC46                                                 <-----------GT1                        --------->LBD16                                          <---------MYB52(1)                       <---------LBD16                        <-----------HVH21 --------->LBD16               --------->ICU4                              ------>ZmHOX2a(1)   --------->ANAC55(2)<--               <---------YAB1                           ------>MYB83           --------->ANAC46   <-- >>>>>>>>>>>>>LFY<---------ARR11(3)                     ------>MYB46(1)       --------------->AtSPL8 <<TBF1      --------->YAB1                        <-----------GT1            <---------LBD16  <-----   tccattgtcgagttttcatgattttcccgcaaaacccttctcgtttatgggtttaaccttcctgtgtcaccaaaattttctccgtaacttatcacctcca  13607700      <---------ARR14(2)                                                               --------->YAB1      --------->ARR14(2)            --------->ZAT14                             --------->LBD16     <---------CCA1(2)              --------->SPL7                        ----------->HVH21 >AtMYB61                           <---------ZAT14                   --------->HSFB2a(1) -------DAG2                    <---------------AtSPL3                <---------HSFB2a(1) --------DOF2             ---------->DOF2    --------->AHL20(2)       <---------HSFC1(2) ----ALFIN1           ----------->GT1    <---------ETT(2)             --------->HSFC1(2)          <--   ctttttcatatctgtaatcgctgaaggtaaaagatgagtacggtcgataaaatgttgatcaagggtataagaagcttcgacccagaaaataagaacgttg  13607800                                            ----------->GT1                                          <-----------------------TaNAC69(2)                                          <---------LBD16                                          <------NtERF2                                         <---------ATERF1(1)                                         ------>NtERF2                                        <---------ARR14(2)                                   --------->MYB52(1)                                   <---------DOF5.7(2)                                  ----------->HVH21                                 --------->DOF5.7(2)                              <------NtERF2 --------->LBD16                              --------->RAP2.3(1)                             <---------RRTF1(1)                             <---------ERF1----------->GT1                             <---------DEAR3(2)                             <---------ORA47(2)                             <---------RAP2.3(1)                             <---------ATERF1(1)                             ------>NtERF2--------->ATERF1(1)                            <---------At1g77200                            <---------DREB2C(2)                                                   <--                            <---------RAP2.3(2)                                                  <---                          <-----------HVH21--------->RAP2.6(2)                          <---------ZAT14                   --------->TOE2(3)    --------->ARR14(2)     ------>ZmHOX2a(1)        <---------ZAT18                   --------->TOE1(3)  ------->GAMYB           --------->TOE2(3)         --------->ZAT14          --------->ARR11(3)<---------RAP2.3(3)        ---------->DOF2                <---------At4g35610 <----------DOF2  --------->ZAT6------>NtERF2<------NtERF2    --------->TOE1(3)       --------->At4g35610 ---------GT1<----------DOF2<---------DEAR3(1)      ----------->GT1  <---------DAG2------>ZmHOX2a(1)   ttactttcttcagacctttaaccctaatcgtcggcgctaacggagccggaaaaactgtaaagttccttaaaccttttctcttctcctcagttcactccca  13607900                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----           <---------MYB52(1)                                                                 -------          --------->LBD16          <---------ANAC58                                           -------         --------->ANAC46          <---------ANAC58                               --------->LBD16----         --------->ANAC55(2)       <---------ANAC46                       <---------ANAC58    <------NtERF2       ------>NtERF2               <---------ANAC55(2)                    <---------ANAC58   ------>NtERF2      --------->DEAR3(1)           --------->ANAC55(2)            ---------->DOF2<---------ANAC46---- ---------ARR10               <----------DOF2        <---------YAB1       <---------ANAC46  --------- ------CCA1(2)            ---------->ID1<---------YAB1       ----------->GT1    <---------LBD16------   tttcttcgcctccgtaattgaaaagtttgtggctatttcgtgatttttgcagacgattatagagtgtttaaaggtgtcttgtaccggagagttgccaccg  13608000 ------->ANAC58 ------->ANAC58 ------>SPL7 -----SPL7 ---->MYB55(1) --->MYB46(3) ----MYB46(2)                                                        ------>MYB46(1) ----MYB52(2)                                                      <---------MYB59 ----MYB55(2)                                                      --------->TOE2(3) -->ANAC58                                                        --------->ANAC55(2) -->ANAC58                           <--------P                   <---------ANAC55(2)         ------- -->MYB46(1)            <---------ICU4                          <-----------GT1            <---------YAB1 -->MYB83 <-----------HVH21       <---------TOE1(3)          <---------ICU4        <-------GAMYB --------->SPL14        --------->YAB1            ----------->ARR10<---------MYB46(2)<---------MYB46(3) --->DEAR3(1)      <-------TEIL   <---------TOE2(3) <---------GLK1(2)------>MYB83 <-----------RAV1(1)   aacgcgaggtctggtcatagcttcattcatgaccctaaggtaagtctctagttagattctcaattcttacctaatttcatgtttctgttgttgatgaatg  13608100  Previous    Next  AGI:  At2g31960.1    Description:  ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups. similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL12 (GLUCAN SYNTHASE-LIKE 12), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G13000.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to unnamed protein product [Vitis vi Range:  from: 13596622    to: 13607143    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g31970.1    Description:  RAD50; ATP binding / nuclease/ zinc ion binding. Identical to DNA repair protein RAD50 (RAD50) [Arabidopsis Thaliana] (GB:Q9SL02;GB:Q9M6P9); similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT4G27595.1); similar to DNA repair protein Rad50 [Triticum turgidum] (GB:ABV90885.1); similar to DNA repair protein Rad50 [Triticum monococcum] (GB:ABV90879.1); similar to DNA repair protein Rad50 [Triticum turgidum] (GB:ABV90886.1); contains InterPro domain Rad50 zinc hook; (InterPro:IPR007517); contains InterPro domain Zinc hook, Rad50 (InterPro:IPR013134); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:I Range:  from: 13607568    to: 13616146    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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