Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------ARR11(3)                                        --------->ARR11(3)                                    ---------->DOF2                           --------->AHL20(2)                           <---------AHL20(2)               --------->At5g28300                         --------->CCA1(2)                --------->ZAT6                            - ---------->DOF2        --------->ARR11(3)             <---------YAB1                        <------- ->AHL20(2)             <---------ARR11(3)        ----------->GT1       ---------->DOF2      <-------   tttaaaagtatgctaagtatgtataagatttaaaaaaaaaaagattttaagagagttataacagtaacacacttgaaagccgaagttttgttcttccttg  13434100       --------->LBD16       <------NtERF2       ------>NtERF2      --------->DEAR3(1)      <---------ANAC46     --------->DEAR4(2)     --------->ATERF1(1)     <------NtERF2    <---------RAP2.3(1)    ------>NtERF2    <---------ATERF1(1)   --------->ANAC46XXXXXXXXXXXXXXXXXXXX>MIR847       <---------ANAC58   --------->DEAR3(1)                                <---------ANAC58  <---------At4g35610                            <---------ANAC58  --------->At4g35610 ------>ZmHOX2a(1)   ------>ZmHOX2a(1)                          <----------DOF2 --------->CDC5 <-----------GT1      --------->GLK1(1)                        ------>MYB46(1) --ANAC58     <-----------GT1        <---------GLK1(1)                        ------>MYB83 --ANAC58<----------DOF2    ------>ZmHOX2a(1)    <---------ANAC58 *TSS     ------------>CBF        --   tctcagcgccgcgttttttctctcctcatcctctcgatgaattcctctcaagcttgcttcttccatttttctcttagaccaatctcgctttcgcatccct  13434200                    <---------TOE2(2)                  --------->TOE2(3)                 <---------ANAC55(2)                 --------->ANAC55(2)                                                                <                 --------->ANAC58                                                              ------           <---------HSFB2a(2)                                                                <------           --------->HSFB2a(2)               <---------ANAC58                                 -------         ------>ZmHOX2a(1)                   <---------ANAC58                                <------ZmHOX2a(1) ---->ZmHOX2a(1) --------->ANAC58--------->LBD16      ----------->GT1                      <---------TOE1(3)   cctatgccttcctctcgaaacgtaagttttccttccccaaattaagtgcttgggaatcgaaattttaagagattgttgttacctagactagttcaggata  13434300                 <---------ANAC46              <---------MYB52(1)             <-------GAMYB--------->ATHB12  --------->TOE2(3)      --------->ICU4               ==================================bZIP_DOF --------->YAB1  <---------ANAC58           ---------->DOF2      <-----------GT1         <----------DOF2 ---------ATHB12 <---------ANAC58           ====================bZIP_DOF                 <---------DAG2 --->CCA1(2)<---------ANAC58      --------->TOE2(3)   <---------TGA1a        ---------->DOF2 ---ARR14(2)--------->MYB52(2)    --------->TOE1(3)  <---------ARR14(2)   --------->AtLEC2 -->ARR14(2)<---------ANAC58   <-----------GT1     --------->DEAR3(1)     ------>ZmHOX2a(1)       ---   caatcgttagagtttcgttgcttcgaattgattaaaccctaatttcaaaagcacagacctgggtttttcactgttcctgcaaagttgataactttttcac  13434400                                          ---------->DOF2                                   --------->GLK1(2)                                 --------->GLK1(1)                                <---------ARR14(2)                                 <-------MYC2                                --------->ARR14(2)                                 ------->MYC3                              --------->LBD16                      ------------>CBF------->MYC2                             --------->ANAC46                  ----------->GT1     <-------MYC3                             --------->LBD16          <----------DOF2   <---------MYB46(3)          < ------>YAB1--------->ZAT6  <---------LBD16           <---------DAG2  <------------CBF          -----   tgatactatctcttagactagttctcttaacccggaaattctctcaaagtatccaactttatgaacagaaacaattgttgaggcatgtgttttgaccttg  13434500              --------->GLK1(1)            <------ZmHOX2a(1)         <-----------RAV1(2)          --------->LBD16 ---------TOE2(3)          --------->ZAT14 ---->YAB1 <---------At4g35610      ------->GAMYB        ------->TEIL   ataatgtttttgcaggagacccatttctgtgttctcaacccagaaaatgccttactacgaatttgaatatgtcaagaacgagacaagggcattctataca  13434600                                                        <---------MYB52(1)                          ---------->DOF2            <---------------------WRI1              <-------TEIL                      ---------->DOF2            <---------ICU4                           --------->GLK1(1)                    <---------YAB1              <---------ATHB51                          --------->At4g35610           --------->ARR11(3)                   <---------AHL20(2)                      <------ZmHOX2a(1)           <---------ARR11(3)                --------->AHL20(2)      <---------YAB1 <---------ANAC46<   aatgaacagaagacatcttcttatgaaagaaaggaagagtttttcgataaattattccgataagttcagagatgattctatgagtagcgaggagatgcat  13434700                                  <-----------GT1                                 <-------TEIL                               <---------GLK1(2)                               <---------ARR14(2)              --------->ZAT2                          ------>NtERF2                   <---------GLK1(1)            --------->ATHB12                          --------->LBD16             --------->ANAC46      --------->ANAC46                         --------->ANAC46    --------->YAB1    <---------ZAT2   <---------ZAT14                        <---------LBD16     <-------TEIL  --------->GLK1(1)------->GAMYB                     --------->KAN4(2)    --------->KAN4(2)    --------->ZAT14  --------->ZAT14             --------->ALFIN1  --------->ARR14(2)   <-----------GT1       <---------ALFIN1     <----------DOF2<---------KAN4(1)    <---------HSFB2a(1)   --------->At4g35610    <---------YAB1 <---------GLK1(2)  --------->KAN4(1)    --------->HSFB2a(1)   <---------At4g35610  <------ZmHOX2a(1) ---------At4g35610<---------KAN4(2)   <------ZmHOX2a(1)--------->ZAT14 ----------->RAV1(1)<---------   acagatgctttggatgtggagattattccgccagattcacaggacattcgtaattcacagaactctgctgtctccaacacactacaggatgataggccaa  13434800                                                                 --------->GLK1(2)             <-----                                                                <---------GLK1(2)            <-------                                                        <---------At4g35610                 <--------P                                                        --------->At4g35610                <-------GAMYB                                                       ----------->RAV1(1)               <---------AtMYB61    --------->HSFB2a(2)                              --------->ZAT14             --------->CCA1(2)  -    <---------HSFB2a(2)                --------------->AtSPL8   --------->ARR11(3)      <------ZmHOX2a(1) <----------DOF2 <---------ANAC58      --------------->AtSPL3   <---------ARR11(3)    --------->ALFIN1 -ID1            <---------ANAC58     --------->ZAT14<---------ZAT14<----------DOF2  <------ZmHOX2a(1)   agtcttttagaaataggtttcttgattttgttcggataagttcagtactcaatactgcagcagaaagattctttaagagcgagataaggaggaggttgtt  13434900             <---------ANAC58             <---------AtLEC2                     <---------LBD16             <---------ANAC58         <---------AHL20(2)      <----------DOF2             <---------RVE1(1)   --------->ARR14(2)                           <-  --------->MYB46(3)        --------->REM1(2)    ----------->RAV1(2)                              <-- --------->RAP2.6(3)       --------->ALFIN1  <----------DOF2                         --------->TOE1(3) ----ANAC46  <---------ANAC46     <---------CCA1(1)   <---------ARR14(2)             --------->TOE2(3) --MYB46(3)<---------YAB1<---------ANAC58   --------->TOE2(3)                  <---------ICU4    <--- -------->MYB52(1)       <---------ANAC58<-----------GT1                  --------->TOE2(3)<---------   tgtaacggctgttttgcttgtacttagccgtgttggatattttatacctttacctggattcgacagaagattaatacctcaagattaccttagctttgtc  13435000  Previous    Next  AGI:  At2g31520.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.9e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element) Range:  from: 13429017    to: 13434166    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g31530.1    Description:  EMB2289/SCY2 (EMBRYO DEFECTIVE 2289); P-P-bond-hydrolysis-driven protein transmembrane transporter. similar to SCY1 (SECY HOMOLOG 1), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT2G18710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22521.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77495.1); contains InterPro domain SecY protein; (InterPro:IPR002208) Range:  from: 13434485    to: 13437542    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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