Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                           <---------At5g28300 ----->AHL20(1)                                               <---------ANAC58        <---------AHL20(2) ------ARR11(3)                                        <---------AHL20(2)             <---------AHL20(1) ----->ARR11(3)                                    <---------YAB1                     --------->AHL20(1) ------AHL20(2)                                   <---------AHL20(2)                  --------->AHL20(2) ----->AHL20(2)                                   --------->AHL20(1)            --------->TOE2(3) ------AHL20(1)                                   <---------AHL20(1)   <------------MYB.PH3(1) ---->AHL20(2)                                   --------->AHL20(2)  --------->MYB52(1)   <---------- >GT1       ---------->DOF2                   --------->YAB1  <---------ANAC58  --------->YAB1   atattcaaagtttagaaagagaaacatagaaaacataaactaaaccattgattatatttgatttgctgggctaactgttttatcttaatattttactgtt  13335700                      <---------YAB1                  <---------GLK1(2)            --------->YAB1           <---------YAB1                                            <---------ICU4        ------>ZmHOX2a(1)                                     --------->At4g35610        <---------AHL20(2)    --------->GLK1(2)<---------ARR11(3)                      ----------->RAV1(1)         --------->AHL20(2)   <---------GLK1(2) --------->ARR11(3)                   --------->ANAC58      ------>NtERF2 ------- --ZAT6<---------ANAC58                                   --------->ANAC58     --------->DEAR3(1)  <- -GT1  <---------ANAC58 <----------DOF2                   --------->ANAC46  --------->ANAC46 <-------   gataagattccttatgatgagattatctttgatttttcaaaaaaactataaatactgaacaagcagcataaacattgcacgacgaccttatataaatcat  13335800                                 --------->GLK1(2)                                --------->GLK1(1)               <-------TEIL                 <------- -->YAB1             ----------->GT1                           --------->ARR14(1)     <---------ICU4 ------TEIL   --------->YAB1    <---------GLK1(1)    ------->TEIL                    --------->ICU4 --ATHB12--------->AHL20(2)---------->DOF2 <----------DOF2    <---------GLK1(2)    --------->YAB1 <--   gttcatataaaaaaaatcacaagttgaaaaaaagaaatctggtctctttggtttgcatctattagattcgttcagagacagcaattcataatgggcctaa  13335900                                                                                             <------NtERF2                                                                                             >>>>>>>>                                                                                             >>>>>>>>                                                                                            ------>NtERF2                                                                                           --------->ANAC58                                                                <---------ANAC58           --------->ANAC46                                                                --------->ANAC55(2)        --------->ANAC58                                                                --------->ANAC46          --------->ZAT18                                                                <---------ANAC58    <------ZmHOX2a(1)                                     --------->MYB52(1)         <---------O2      <---------TOE2(2)                                  --------->ANAC58          --------->CCA1(2)     <---------TOE1(2)--                              --------->LBD16             <------MYB83<----------DOF2     <---------ZAT18                             <---------ANAC46        <------NtERF2   <---------ANAC58    <---------ANAC58                             <---------LBD16        ------>NtERF2    <---------ANAC46    <---------ANAC46      <----------DOF2       <---------LBD16<--------P--------->ATERF1(1)        --------->TOE1(2)  <- --MYB59      <---------TOE2(2)   --------->ANAC58  <---------LBD16  <---------ANAC58    <---------ANAC58 -------AHL20(2)   --------->ANAC55(2)   ----------->GT1  <------MYB46(1)      --------->ANAC46------   ttaatgggcttcttcgtagataagtgttttcgcgggaagcaacgggttaataggcgcgggaggtatacgtggctttggtacacgtaggattgcgcgccaa  13336000                                                                                       --------->ANAC58                                                                                       --------->ANAC58       <---------AHL20(2)                                                             *TSS <---------MYB59                                                                  ----------->HVH21 >E2Fc<---------AHL20(2)                                                        <---------At4g35610 >E2Fd--------->AHL20(2)                                                        --------->At4g35610 ------->ARR11(3)                <---------MYB52(1)                     ------>ZmHOX2a(1) --------ARR11(3)         <<<<<<<<<TBF1                     ------>ZmHOX2a(1)   ----------->RAV1(2) ---->DOF2             <<<<<<<<<TBF1                       --------->ANAC46    ------->TEIL   agacctaaataaatctaaacccttcttcttcttccgtcgtcttcatcgtcttcatctatctcctccactatctcctctctgcatctgacactctatagac  13336100                                   <-------TEIL                                  <------ZmHOX2a(2)                              --------->HSFC1(1)                       --------->ARR14(2)           -                              <---------HSFB2a(2)                      <---------ARR14(2)           <                              --------->HSFB2a(2)                      <---------GLK1(2)         ----                <---------ZAT14  <---------ARR14(2)                 <---------WOX13(1)   --------->TOE2(3)                --------->ZAT18  --------->AGP1                <------MYB83            <---------ARR11(3)                <---------ZAT18  --------->ARR14(2)            <------MYB46(1)------>NtERF2     <----                --------->ZAT14  <---------ARR11(3)           <---------MYB46(3)      <---------GLK1(1)         XXXXXXXXXXXXXXXXXXXX>MIR161.1     --------->AtLEC2--------->ATHB12  --------->DEAR3(1)<-----   attgttgataaaaatgagtacaccaggctcttctagatccattccattcaaatcgaagaaacgattggtgatggattcgccgtcttcgaaatctcaaacc  13336200                                    <------NtERF2                                   --------->LBD16                                    <----------DOF2                                  --------->RAP2.6(2)                                 <---------DAG2                                  --------->LBD16                                    <---------ANAC58       --------->ARR14(2)        <---------LBD16                                <-----------RAV1(1)       <---------ARR14(2)       ------>NtERF2                                  ------>ZmHOX2a(2) <---------ARR14(2)            --------->ANAC46                               <------ZmHOX2a(2) --------->GLK1(2)             --------->ANAC58                              <---------ARR14(2) -------->GLK1(1)              --------->ANAC58                              --------->ARR14(2) ---------GLK1(1)             --------->SPL7                            <---------ARR14(2) ----->LBD16               <---------ANAC58                         <---------HSFB2a(2)         ----- -----LBD16                <---------ANAC58                         --------->HSFB2a(2)   <---------YAB1 ----LBD16                 ----------------->AGL1                <---------ARR14(2)  <---------ANAC58   gggaatccaaatccgtcttctgtagcattgcctacgccggaaaaaccacttgagaacatgcttagtagatcgagaaaccgatctgtggctttatcagtga  13336300                                            <-------GAMYB                                            <---------MYB52(1)                                           --------->LBD16                                         ------>ZmHOX2a(2)                                        --------->CCA1(2)                                        <------ZmHOX2a(2)                                        --------->ARR14(1)                                       --------->ARR14(2)                                <------ZmHOX2a(2)                                --------->CCA1(2)                               --------->ARR11(3)                               --------->ARR14(2)                               <---------ARR11(3)                               <-----------ARR10     --------->At4g35610                     ------>ZmHOX2a(2) --------->ARR11(3)                    <---------GLK1(1)  <---------ARR11(3)                   <---------AGP1      --------->ARR11(1)                   <---------ARR11(3)  --------->ARR14(3)                   --------->ARR11(3)  <---------ARR14(3)                   <---------ARR14(2)  <---------ARR14(2)                   --------->ARR14(2) <---------GLK1(1)          --------->ANAC58     <---------AGP1   <---------ANAC58          --------->ANAC58     --------->AGP1<--------P        ---------->DOF2        <---------ARR14(2)    <---------At4g35610            <---------ICU4       --------->WRKY18(1)    <---------CCA1(2) <---------ANAC58                    --------->YAB1      <-----------HVH21 <-----------HVH21<---------LBD16                         --------->YAB1    <-------TEIL  <---------CCA1(2)  ----------->ARR10      ---------->DOF2     <-------TEIL ----->DOF2   --------->At4g35610------>ZmHOX2a(2) --------->REM1(1)   <----------DOF2           ----   aagaaattcgtcaagccgctggatctcgtcgcagatctgaagatccggttgcttcatctgccaaaagcaggctctttttcgattcatcatcatcttctcc  13336400                                             --------->LBD16                                            --------->HSFB2a(2)                                            <---------ANAC46                                            <---------HSFB2a(2)                                           <---------LBD16                                          --------->MYB52(1)                                      <--                                       <---------HSFB2a(1)                                        <--        ---------->DOF2                --------->HSFB2a(1)                                       <---     --------->TOE2(3)                 --------->HSFC1(2)                                    --------    ----------->GT1            ---------->DOF2                                              <--------    <---------ANAC55(2)     <XXXXXXXXXXXXXXXXXXXXMIR413                       ---------->DOF2<------- -->ZmHOX2a(1)        ---------->DOF2  <---------HSFC1(2)            ----------->GT1     --------->AHL20(2)   ttcaaaacgtaaaagctctaacaaaaatgcagagaaagagaaacttccggagaagtaagttttaatctctagggtttataaaaagtttcaattttttccc  13336500                                                 <---------ARR11(3)                                               <---------HSFB2a(1)                                               <---------HSFC1(2)                                               --------->HSFB2a(1)                                               --------->HSFC1(2)                                          --------->LBD16                                        --------->TOE1(2)                                      --------->GLK1(2)                                      --------->ARR14(2)    <-----------------AG             <---------GLK1(2)   <-----------GT1               <---------TOE1(1) --------DOF2               <---------------AtSPL3 -------DAG2         <---------GLK1(1)<---------ARR14(2) ------DAG2   --------->ARR14(2) <---------TOE2(1)         --------->ATHB12 -->ID1       <---------ARR14(2)<-------TEIL ---------->DOF2 ---GT1--------->ATHB12     <---------------AtSPL8  <----------DOF2 ----GT1     <------ZmHOX2a(1)<---------ARR14(2) --------->ARR11(3)                             <----   ctttttaactgattaggatttggatttgtgcaggtacgagaatctgggaaagttctttgaagcattggataattcgatgttgttatcgaaattaagaggt  13336600  Previous    Next  AGI:  At2g31270.1    Description:  ATCDT1A/CDT1/CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding. similar to ATCDT1B/CDT1/CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 B), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT3G54710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70694.1); contains InterPro domain DNA replication factor CDT1-like (InterPro:IPR014939) Range:  from: 13336086    to: 13338907    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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