Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <-----------GT1                                                   <---------ANAC55(2)                                                   --------->ANAC46                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   --------->ANAC58                                                   --------->ANAC55(2)                                                   --------->ANAC58                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxsmallRNA(si3)          <---------------AGL15<---------ZAT2    <---------ALFIN1             ----------->RAV1(2)          <----------DOF2      --------->ZAT2------>MYB83                    --------->LBD16       --        <---------ZAT14        <---------ZAT14 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <xxx        --------->ZAT14        xxxxxxxxxxxxxxxx>smallRNA(s)              --------->ARR14(2)      <xxx        --------->At4g35610    --------->ZAT14<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58    <---------ALFIN1          xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          --------->GLK1(2)       ----   --------->MYB46(3)      <---------DEAR3(1)------>MYB46(1)    ------>NtERF2------>NtERF2     ------  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(s) <----------DOF2     --------->ANAC58 ---->ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s) --------->WRKY18(1) ----YAB1<xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ARR14(2)    ======   atccatccactgctgtaagagggaagtagtcgctgctctgtgaaaccagcctcacgcattaccctccgactttagaatccgcctgagtcaagccttcgcc  13279100                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        --------->CCA1(2)  ----------->HVH21                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     --------->TOE2(3)                                 --------->At4g35610       <---------ETT(1)                <---------DAG2                                 <------NtERF2          <-----------HVH21               --------->AtMYB61    <---------ALFIN1        <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <  <---------ALFIN1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->LBD16  <xxxxxxxxxxxxxxxxxx  ----------->RAV1(1)    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  - ------->PCF2       xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------HVH21             <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(si3)   <---------At4g35610 <-----------RAV1(2)     <---------ALFIN1      -- xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB46(3)<------ ------->HVH21     --------->ZAT2--------->ZAT2  <---------At4g35610  <------------CBF  --------->DEAR3(1) ----->RAV1(2)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->At4g35610<------ZmHOX2a(1)  --------->MYB46(3) =============RAV  <---------ZAT2<---------ZAT2<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ALFIN1   tgacccacacagattactcacagcttggactgggcagctcagatatatgtcagcatcaggtccgacccgaggaattgaaccactgttccaccaccttatt  13279200                 <---------ARR11(3)                                              <---------At4g35610                 --------->ARR11(3)                                              --------->At4g35610<         <-----------HVH21                                                   <---------ARR14(2)    <-  <---------ALFIN1                                                      --------->ANAC58         ---- -----------------AGL1    <---------ANAC58                              --------->ANAC58         <--- xxxxsmallRNA(se3)        <---------ANAC58                              --------->ANAC46       <----- ---------------->AGL1   --------->MYB52(2)                           --------->MYB52(1)   <--------- xxxxxxsmallRNA(se3)   <---------MYB52(1)                           --------->MYB46(3)     ---------- ------->PCF2  --------->ANAC58                        <---------At4g35610   --------->ARR14(2)<----- ------CBF     --------->ANAC58             <---------MYB46(3)  <---------AHL20(2)        <----------   gtccccactcgggtcacaagctctcgttacttagctcgacttacagttgttgtgttcttctgatatataaacaaacgcaaaactgctgagttttccgatg  13279300                                              --------->ZAT18 ---------PCF2                             <---------O2 ---------ID1                              <---------ANAC55(1) ----->ALFIN1                              <---------ANAC58 ------------AtSPL8                        <---------ANAC58 ----O2                                    --------->ANAC55(2) --------AGL1                      <-----------GT1                                             ------ ------->AGL1                      <---------AHL20(2)    <-----------HVH21                     ------ ----TGA1a <-----------HVH21<-----------GT1<---------ANAC46        <---------YAB1              ------ -------AGL1          <---------YAB1  <----------DOF2   <----------DOF2          ---------->DOF2  ---   tgggacaaaaaactgtcatttgttttgatttatcaatttacttttacgtgggctaaacctttcaggcccattatagactgatgaaaagccctatttaacg  13279400                                                --------->ANAC58                              -------                                                --------->ANAC58                              -------                                              ---------->DOF2                                 <------ --->ANAC46                              --------->ALFIN1                          --------->ZAT14 --->ANAC58                           <------ZmHOX2a(1)           >>>>>>>>>TBF1    <---------ZAT14 --->ANAC58                        --------->CCA1(2)           >>>>>>>>>TBF1       --------->ZAT18 ------->DOF2                   <---------TOE2(3)   *TSS <XXXXXXXXXXXXXXXXXXXXMIR838          -------   caaagagctctaaaaatatgaagagacagtttttgagataggagaggggaaagcaaatgcaagaagaagaagaagtgtctctatgtgctctgtctgaatc  13279500                                --------->At4g35610         <----------DOF2 <---------ZAT2    ------->GAMYB        --------->ZAT2 <---------DOF5.7(2)     --------->At4g35610 --------->MYB52(1)<----------DOF2 >TEIL<---------ANAC46   <---------At4g35610      --------->AHL20(2) -->GLK1(2)     <---------ARR11(3)            --------->LBD16                    --------->YAB1<----- ---ARR14(2)   <------ZmHOX2a(1)<---------At4g35610    --------->TOE2(3)   --------->YAB1      ------ -->ARR14(2)<---------LBD16----------->HVH21  ------>ZmHOX2a(1)   ------>ZmHOX2a(1)--------->ICU4   tgttaacggcgttttcaggaactttgcagctgacttctgactacgttcctgataaattcttagtcttcctctctctctcatagtcagaattgtttagtat  13279600                                                                                --------->ANAC46            <------NtERF2                                               <---------YAB1      <---------ANAC58                                               <---------YAB1      <---------ANAC58  <---------AHL20(2)                      <---------MYB52(1)      <---------LBD16--------->YAB1                            <---------RAP2.6(3) <---------ALFIN1      <---------ANAC46  --------->ATHB51                     ---------->ID1    <---------ZAT18 ----ARR11(3)  <---------ZAT6                            <---------ANAC58      --------->ZAT18 --->ARR11(3)<---------ANAC46        <----------DOF2     <---------ANAC58<-----------RAV1(1)   ctctgttttcgggcatcgtgttagaataatttggataagctttctatctgtttggaatagcttgccgttttgttattgttgtccaccacttgttcgatga  13279700                       <---------DAG2                       <----------DOF2                      <---------ANAC58                   <---------WOX13(1)                <---------YAB1                <---------AHL20(2)          <---------TOE1(3)          <---------TOE2(3)          --------->MYB52(2)               <---------ANAC58       ----------->HVH21      <---------DEAR3(1)                      <---------ANAC58     <---------ANAC46 <---------ANAC58  <-----------GT1--------->MYB52(1)          --------->WOX13(1)   aatgactgtgtgaaggttttaattgcttttcgacggtgttatttgcctctctatggataacgaagttgcatttcttgtcaaatttcaatccaaaacaaaa  13279800                                                                                       <---------ANAC46                                                                                       <------MYB46(1)                                                                                       <---------ANAC55(2)                                                                                       ----------->GT1                         <---------HSFB2a(2)                                           <------MYB83                         --------->HSFB2a(2)                                          --------->MYB111(1)                  <---------AHL20(2)                                                  --------->MYB59                <<<<<<<<<MYB98                                                        --------->MYB46(2)              <---------YAB1                    ----------->GT1                     <---------MYB52(1)              ----------->GT1                   <---------ANAC46     <---------At4g35610          <---------ANAC58                 <-----------RAV1(1)       --------->At4g35610  ---------->TaMYB80          <---------ANAC46             --------->ARR11(3)  <------ZmHOX2a(1)  <---------GLK1(2)          <---------ANAC58           <---------YAB1     <---------ICU4  -------->P<---------YAB1  <--   atttgcatttttgcttatgttaaattttcagaacccagtaagattatgttgcgaaaaatcaggactgttttagctacctagattatgttaggtatatact  13279900                             --------->ALFIN1                           <---------ANAC58                                   --------->YAB1                           <---------ANAC46                     --------->ARR11(3)                           <---------ANAC58                     <---------ARR11(3)     <-------GAMYB                         <------MYB83                          <---------GLK1(1)      <------MYB46(1)                         <---------ANAC58                      <---------RVE1(1)      <------MYB83                         <---------ANAC46                      --------->GLK1(1)  <---------ARR14(2)           <---------ICU4<---------ANAC58                     <---------ARR11(3)  --------->ARR14(2)   ----------->GT1       <------MYB46(1)  <----------DOF2     --------->ARR11(3)  --------->GLK1(2) -------YAB1    <---------AtLEC2 --------->MYB59----------->HVH21    --------->ANAC46--------->MYB59   atgaaaggtttaatctttgcataaatttggtgtgttaggcattactttctgtgacatttgatcagatatctaagaaacattgagaatttggttgaacaca  13280000  Previous    Next  AGI:  At2g31141.1    Description:  unknown protein Range:  from: 13278919    to: 13279059    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g31150.1    Description:  ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism. similar to ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G06190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40622.1); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) Range:  from: 13279452    to: 13281655    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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