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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                  --------->ZAT14
                                                                                  --------->REM1(2)
                                                                                  <---------ZAT14
                                                                                 --------->ALFIN1
                                                                               <---------ANAC58
                                                                               <---------ANAC46
                                                                               <---------ANAC58
                                                                             <---------ANAC58
             <-----------RAV1(1)                                             <---------ANAC58
         <---------MYB52(1)                                                  <---------ANAC46
        <---------RAP2.6(3)                                                  <------MYB83
       <---------ANAC58                                        <---------YAB1<------MYB46(1)
       <---------ANAC46          <-----------GT1            ---------->ID1  --------->MYB46(2)
       <---------ANAC58    <----------DOF2             <---------MYB52(1)   <---------MYB46(3)
  <---------ANAC58        <---------ANAC58            <---------RAP2.6(3)   --------->MYB111(1)
  <---------ANAC55(1)     <---------ANAC58          ---------->ID1          <---------AtMYB61
  <---------ANAC58  <---------ALFIN1            <---------ANAC58         <---------MYB46(3)        -
  <---------ANAC46 <---------ZAT18              <---------ANAC58        <---------ANAC46----------->GT1
 
aacttgcgtgccgtttttgttgcccacttgctttgtttacctcttcaaaatgcttgccgttttgttgttattgtggtgtttggtgtgtagtgagttaata  13229300
                                                                         ------>ZmHOX2a(2)
                                                                        --------->CCA1(2)
                                                                        <------ZmHOX2a(2)
                                                                       <---------AGP1
                                                                       --------->AGP1
                                                                       --------->ARR14(3)
                                                                       --------->ARR11(3)
                                                                       <---------ARR11(3)
                                                                       <---------ARR14(2)
                                                                       --------->ARR14(2)
                                                                      --------->RVE1(1)
                                                                     ----------->ARR10
                                                                   ---------->DOF2
                                                                --------->LBD16
                                                              ------>ZmHOX2a(2)
                              --------->At4g35610            --------->GLK1(1)
                              <---------At4g35610            <------ZmHOX2a(2)
                              <---------ZAT2                <---------ARR14(2)
                           ---------->DOF2                  <---------ARR11(3)
                         ----------->HVH21                  --------->ARR14(2)
                        --------->TOE2(3) --------->ANAC58  --------->ARR14(3)
                      --------->MYB52(1)  --------->ANAC46  <---------ARR14(3)
                   --------->ZAT2  --------------->AGL15    --------->ARR11(3)
                   --------->At4g35610    --------->ANAC58 --------->At4g35610
  --------->At4g35610 -------->P   <---------------AGL15   <---------GLK1(1)
 ----------->HVH21 <---------At4g35610 --------->ANAC46    <---------At4g35610                    <-
---------->RAV1(2) <---------ZAT2--------->At4g35610   --------->AtLEC2<---------ARR14(3)     <-----
 
acatctgatgcaggctggacacagctacctgaaagctgctacaagaagcaactcttctatgcagatccccaaaagatctgccatggcagtcacaagattc  13229400
          --------->ANAC58
    ----------->RAV1(1)  <----------ID1
    ------>MYB83         ----------->GT1
    ------>MYB46(1)     ----------->GT1                                                           <-
  <---------MYB59     --------->DAG2                                                              --
  --------->MYB46(3) ---------->DOF2                ---------->DOF2                               --
--------ATHB12  <---------ATHB12         --------->AHL20(2)                                ---------
--TEIL    --------->ANAC58               --------->ICU4        <---------GLK1(2)      ---------->DOF2
 
aatgacccaacatacccaaatcaaaaaagggaaaaaatgaagaaatatttagaagaaaagagattggaatctttagtctagggttttcccaaagagatga  13229500
                                                                           --------->AHL20(2)
                                                                           <---------AHL20(1)
                                                                           --------->ARR11(3)
                                                                           <---------AHL20(2)
      ----------->RAV1(1)                                                  --------->AHL20(1)
--------ARR14(2)            ---------->DOF2                                <---------ARR11(3)
------->ARR14(2)           --------->AHL20(2)                        <----------DOF2         <------MYB83
------->GLK1(2)         --------->YAB1                               --------->TOE2(3)       <------MYB46(1)
>CCA1(2)             <---------AHL20(2)                      --------->CCA1(2)           --------->MYB52(2)
 
gaatttggacaacaaaattgatattaaaaataaaagagcgagagagagagagagagagagagagagatgctactttaatatattgatatgtttagttggt  13229600
                                                            <------MYB46(1)
                                            <---------ZAT14 <------MYB83
                        ----------->GT1     --------->ZAT14 <---------MYB46(3)       *TSS         --
                        <----------ID1      --------->ZAT18<---------AtMYB61        <---------------AtSPL8
                       ----------->GT1      --------->ARR14(2)           --------->At4g35610     <--
                 >>>>>>>>>TBF1 ---------->DOF2          <-----------RAV1(1)        <---------TOE1(3)
              ------------------------>ANAC81           <---------MYB46(3)         <---------TOE2(3)
        <------ZmHOX2a(1)<------ZmHOX2a(1)  <---------ARR14(2)       <------ZmHOX2a(1)  <-------TEIL
 
ctaaaatcgaaggacaagaagaagaagaggaaaaaaaagagagagagtatactattagattgttggtggaaaggatagcagaagttaagggttcagaata  13229700
                          <----------DOF2
                         <---------ANAC58                 ------>ZmHOX2a(1)
           --------->AHL20(2)              ------>ZmHOX2a(1)
           <---------AHL20(2)     <----------DOF2     --------->GLK1(2)
       --------->AHL20(2)<---------ANAC58 --------->TOE2(3)                                       --
----------->GT1     <----------DOF2    ---------->ID1<---------GLK1(2)      ------->MYC3  <---------ARR11(3)
-------->DOF2      <---------DAG2<---------DAG2--------->YAB1               <-------MYC3  --------->ARR11(3)
----ZmHOX2a(1) <-----------GT1<-----------GT1 <---------YAB1   <-----------GT1    ------>ZmHOX2a(1)
 
ggaaagtaaactaaataaatacccttttgctttcaaccttttgttccttattataagattcctatttcacatatcaacatgtgtccttgttaagttctta  13229800
                                                    <---------YAB1
                                                  <---------ICU4
                                               <--------HAHB4
                                               -------->ATHB1
                                               --------->YAB1
                                               <---------ICU4<---------ICU4
                                              <---------ATHB12
                                              --------->ICU4 --------->YAB1
                              <---------HSFB2a(2)--------->ICU4                              <------
                              --------->HSFB2a(2)<---------YAB1  <---------ANAC58           --------
                     <---------AHL20(2)     --------->WOX13(1)   <---------ANAC58           --------
                    <---------AHL20(2)    ------>ZmHOX2a(1) <---------ATHB12                --------
--------->RAV1(1)   --------->AHL20(2)   --------->TOE2(3)--------->WOX13(1)               <-------TEIL
 
gccacatatttgtttatttcaaatttttttgttacagaaaaattcctcaatcattattcttcaatcatgcgtgccatatcgaattcttgaaacatacata  13229900
                                                                                                <---
                                                               <-----------ARR10                ----
                                                               --------->ARR11(3)              -----
                                                               <---------ARR11(1)      --------->ARR11(3)
                        ----------->GT1       <---------AHL20(2)                       <---------AHL20(2)
                  <------ZmHOX2a(1)           --------->AHL20(2)         --------->REM1(1) <--------
---MYB59        <---------TOE2(3)            <---------ATHB12 <---------CCA1(2)        <---------AHL20(1)
->YAB1      --------->YAB1<------ZmHOX2a(1)  --------->AHL20(2)<---------ARR11(3)      --------->AHL20(1)
->ANAC55(2)<---------AHL20(2)           --------->TOE2(3)   --------->YAB1       ----------->GT1<---
->ANAC46  --------->AHL20(2)    ----------->GT1     ------->TEIL --------->TOE2(3)    --------->ICU4
 
actatatatatcatataataaggaatataggaaaattgaaaaacatcaataaatgaacatatatcatatcttagttacaccaatttgtaatattttgttt  13230000
                                                                                   <------ZmHOX2a(1)
                                                                                 <---------TOE2(3)
                                                                             <------NtERF2
                            <---------AHL20(2)                               <---------At4g35610
                        <---------AHL20(2)                   <-------TEIL    --------->At4g35610
                        --------->AHL20(1)              ----------->RAV1(1) <---------DEAR3(2)
                        --------->AHL20(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
---MYB83--------->ARR14(2)  --------->YAB1             --------->ANAC46    <---------DEAR3(1)
------->GT1             <---------AHL20(1)           --------->ANAC46      <---------RAP2.6(2)    --
---->MYB59     ------>ZmHOX2a(1)                     --------->ANAC58     <---------ORA47(1)     ---
-YAB1   <---------ARR14(2)  --------->AHL20(2)     <-----------GT1<---------ALFIN1<---------YAB1<---
---MYB46(1) ------>ZmHOX2a(1)         ---------->DOF2--------->ANAC58   <---------MYB46(3)--------->AtLEC2
 
ggttaatgtcaaatcctccttcactaattaattaaaacttgaaaagcatatgtttcacacaacatacacacacattggtcggcttaggattacatgctaa  13230100
                                                                              --------->AHL20(2)
                                                                              <---------AHL20(2)
                                                                       --------->ANAC46
                                                                      -------->P
                                                                      ------>MYB46(1)
                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                                      ------>MYB83
                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                   <---------ANAC58
                                                                   <---------ANAC58
                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                                                            <------NtERF2     --------->AHL20(1)
                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                        <---------ANAC58      <---------AHL20(1)
                                                        <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                 <---------ZAT2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                 --------->At4g35610<---------MYB59
                                                 <---------At4g35610<---------MYB46(2)
    <<<<<<<<<<<<<<<<<LFY                         --------->ZAT2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
   <---------ETT(2)           <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <
   --------->ETT(2)   --------->ZAT6 --------------->AGL15xxxxxxxxxxxxxxxxx>smallRNA(si3)          -
-------->DOF2  <---------AHL20(2)    <---------------AGL15--------->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
------>YAB1    --------->ATHB51    <---------AHL20(2)   --------->ALFIN1<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
------ATHB12  --------->ICU4--------->YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxx
 
tcaaagtcgacaatggaataatttgactctagtatgatttttttttttggtaagctgaggggtggcaattgcctaccccaatttattaagaacaaactac  13230200
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AGI:  At2g31070.1   
Description:  TCP10 (TCP DOMAIN PROTEIN 10); transcription factor. similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.2); similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69844.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333)
Range:  from: 13227555    to: 13229686    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g31080.1   
Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.3e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Range:  from: 13230136    to: 13234125    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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